Borrelia burgdorferi JD1

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve rplN nucleotide sequence in FASTA format

Retrieve rplN protein sequence in FASTA format

Retrieve BbuJD1_0488 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using BbuJD1_0488 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Spirochaetaceae Borrelia Borrelia burgdorferi group Borrelia burgdorferi )

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