Chlamydophila pneumoniae J138

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve yycJ nucleotide sequence in FASTA format

Retrieve yycJ protein sequence in FASTA format

Retrieve CPj0879 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using CPj0879 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Chlamydiae/Verrucomicrobia group Chlamydiae Chlamydiae (class) Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae )

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