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Clostridium difficile ATCC 43255, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05350442.1 CdifA_020200006742 putative RNA-binding protein 170 439 1
CDS - ZP_05350443.1 CdifA_020200006747 tRNA pseudouridine synthase B 452 1357 1
CDS - ZP_05350444.1 CdifA_020200006752 riboflavin biosynthesis protein 1488 2417 1
CDS - ZP_05350445.1 CdifA_020200006757 30S ribosomal protein S15 2521 2778 1
CDS - ZP_05350446.1 CdifA_020200006762 hypothetical protein 3019 3864 1
CDS - ZP_05350447.1 CdifA_020200006767 polynucleotide phosphorylase/polyadenylase 3989 6100 1
CDS - ZP_05350448.1 CdifA_020200006772 putative polysaccharide deacetylase 6366 7109 1
CDS - ZP_05350449.1 CdifA_020200006777 putative peptidase 7267 8514 1
CDS - ZP_05350450.1 CdifA_020200006782 hypothetical protein 8549 8794 1
CDS - ZP_05350451.1 CdifA_020200006787 aspartate kinase I 8804 10027 1
CDS - ZP_05350452.1 CdifA_020200006792 translocation-enhancing protein TepA 10140 10874 1
CDS - ZP_05350453.1 CdifA_020200006797 putative DNA translocase 10997 13408 1
CDS - ZP_05350454.1 CdifA_020200006802 tRNA 2-selenouridine synthase 13411 14469 1
CDS - ZP_05350455.1 CdifA_020200006807 radical SAM-superfamily protein 14463 15797 1
CDS - ZP_05350456.1 CdifA_020200006812 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 15784 16326 1
CDS - ZP_05350457.1 CdifA_020200006817 RecA protein (recombinase A) 16614 17660 1
CDS - ZP_05350458.1 CdifA_020200006822 phosphodiesterase 17860 19377 1
CDS - ZP_05350459.1 CdifA_020200006827 putative signaling protein 19691 22027 1
CDS - ZP_05350460.1 CdifA_020200006832 hypothetical protein 22409 24190 1
CDS - ZP_05350461.1 CdifA_020200006837 signal peptidase I 24272 24802 -1
CDS - ZP_05350462.1 CdifA_020200006842 undecaprenyl-diphosphatase 24842 25666 -1
CDS - ZP_05350463.1 CdifA_020200006847 putative tyrosine recombinase 25923 26831 1
CDS - ZP_05350464.1 CdifA_020200006852 adenylosuccinate lyase 26975 27601 1
CDS - ZP_05350465.1 CdifA_020200006857 adenylosuccinate lyase 27651 28421 1
CDS - ZP_05350466.1 CdifA_020200006862 MarR family transcriptional regulator 28732 29184 1
CDS - ZP_05350467.1 CdifA_020200006867 PTS system, maltose and glucose-specific IIBC component 29596 31173 1
CDS - ZP_05350468.1 CdifA_020200006872 transcriptional regulator 31321 32073 1
CDS - ZP_05350469.1 CdifA_020200006877 maltose-6'-phosphate glucosidase 32206 33552 1
CDS - ZP_05350470.1 CdifA_020200006882 aspartate aminotransferase 33664 34860 -1
CDS - ZP_05350471.1 CdifA_020200006887 putative galactose-1-phosphate uridylyltransferase 35245 36195 1
CDS - ZP_05350472.1 CdifA_020200006892 putative exodeoxyribonuclease 36356 37108 1
CDS - ZP_05350473.1 CdifA_020200006897 putative exonuclease 37200 37976 -1
CDS - ZP_05350474.1 CdifA_020200006902 glutamine synthetase 38291 40189 1
CDS - ZP_05350475.1 CdifA_020200006907 putative cell wall biosynthesis protein 40317 41447 -1
CDS - ZP_05350476.1 CdifA_020200006912 PadR-family transcriptional regulator 41637 41969 1
CDS - ZP_05350477.1 CdifA_020200006917 hypothetical protein 41962 43086 1
CDS - ZP_05350478.1 CdifA_020200006922 hypothetical protein 43079 44149 1
CDS - ZP_05350479.1 CdifA_020200006927 putative lipoprotein 44251 44787 1
CDS - ZP_05350480.1 CdifA_020200006932 putative lantibiotic ABC transporter,ATP-binding protein 44903 45610 1
CDS - ZP_05350481.1 CdifA_020200006937 putative lantibiotic ABC transporter, permease protein 45612 46328 1
CDS - ZP_05350482.1 CdifA_020200006942 putative lantibiotic ABC transporter, permease protein 46330 47088 1
CDS - ZP_05350483.1 CdifA_020200006947 lantibiotic two-component sensor histidine kinase 47223 48611 1
CDS - ZP_05350484.1 CdifA_020200006952 putative pyridoxine kinase 48687 49508 -1
CDS - ZP_05350485.1 CdifA_020200006957 hypothetical protein 49759 50913 1
CDS - ZP_05350486.1 CdifA_020200006962 putative cold shock protein 51096 51296 1
CDS - ZP_05350487.1 CdifA_020200006967 putative regulatory protein 51717 52145 1
CDS - ZP_05350488.1 CdifA_020200006972 putative peptidyl-prolyl isomerase 52288 53043 -1
CDS - ZP_05350489.1 CdifA_020200006977 hypothetical protein 53164 53580 -1
CDS - ZP_05350490.1 CdifA_020200006982 putative phage-related protein 53744 54250 -1
CDS - ZP_05350491.1 CdifA_020200006987 putative phage repressor 54295 54651 -1
CDS - ZP_05350492.1 CdifA_020200006992 putative phage regulatory protein 54820 55017 1
CDS - ZP_05350493.1 CdifA_020200006997 hypothetical protein 55121 55561 1
CDS - ZP_05350494.1 CdifA_020200007002 hypothetical protein 55810 56253 1
CDS - ZP_05350495.1 CdifA_020200007007 hypothetical protein 56258 57322 1
CDS - ZP_05350496.1 CdifA_020200007012 hypothetical protein 57336 57764 1
CDS - ZP_05350497.1 CdifA_020200007017 hypothetical protein 57890 58336 1
CDS - ZP_05350498.1 CdifA_020200007022 hypothetical protein 58363 58530 1
CDS - ZP_05350499.1 CdifA_020200007027 hypothetical protein 58530 60983 1
CDS - ZP_05350500.1 CdifA_020200007032 hypothetical protein 60983 61405 1
CDS - ZP_05350501.1 CdifA_020200007037 putative phage cell wall hydrolase 61687 63216 1
CDS - ZP_05350502.1 CdifA_020200007042 hypothetical protein 63232 63558 1
CDS - ZP_05350503.1 CdifA_020200007047 phage protein 63558 63986 1
CDS - ZP_05350504.1 CdifA_020200007052 phage protein 63979 65031 1
CDS - ZP_05350505.1 CdifA_020200007057 phage protein 65028 65726 1
CDS - ZP_05350506.1 CdifA_020200007062 putative phage tail fiber protein 65727 66713 1
CDS - ZP_05350507.1 CdifA_020200007067 hypothetical protein 66735 71909 1
CDS - ZP_05350508.1 CdifA_020200007072 putative phage-related protein 71926 72279 1
CDS - ZP_05350509.1 CdifA_020200007077 hypothetical protein 72542 72802 1
CDS - ZP_05350510.1 CdifA_020200007082 hypothetical protein 73009 73464 -1
CDS - ZP_05350511.1 CdifA_020200007087 putative phage regulatory protein 73692 74111 -1
CDS - ZP_05350512.1 CdifA_020200007092 putative phage regulatory protein 74410 74619 1
CDS - ZP_05350513.1 CdifA_020200007097 hypothetical protein 74651 74860 1
CDS - ZP_05350514.1 CdifA_020200007102 putative phage regulatory protein 75077 75475 -1
CDS - ZP_05350515.1 CdifA_020200007107 putative transporter 75895 78387 -1
CDS - ZP_05350516.1 CdifA_020200007112 TetR family transcriptional regulator 78401 78943 -1
CDS - ZP_05350517.1 CdifA_020200007117 glycerol kinase 79187 80701 1
CDS - ZP_05350518.1 CdifA_020200007122 GntR family transcriptional regulator 80815 81444 -1
CDS - ZP_05350519.1 CdifA_020200007127 LamB/YcsF family protein 82032 82823 1
CDS - ZP_05350520.1 CdifA_020200007132 transporter 82852 84072 1
CDS - ZP_05350521.1 CdifA_020200007137 putative allophanate hydrolase subunit 1 84092 84787 1
CDS - ZP_05350522.1 CdifA_020200007142 putative allophanate hydrolase subunit 2 84817 85803 1
CDS - ZP_05350523.1 CdifA_020200007147 MerR family transcriptional regulator 86022 86588 -1
CDS - ZP_05350524.1 CdifA_020200007152 putative chloromuconate cycloisomerase 86940 88007 1
CDS - ZP_05350525.1 CdifA_020200007157 hypothetical protein 88026 89186 1
CDS - ZP_05350526.1 CdifA_020200007162 putative esterase 89199 91295 1
CDS - ZP_05350527.1 CdifA_020200007167 hypothetical protein 91332 91433 1
CDS - ZP_05350528.1 CdifA_020200007172 putative endoribonuclease 91454 91798 -1
CDS - ZP_05350529.1 CdifA_020200007177 hypothetical protein 92090 92980 1
CDS - ZP_05350530.1 CdifA_020200007182 putative oxidoreductase 93198 94484 1
CDS - ZP_05350531.1 CdifA_020200007187 hypothetical protein 94694 95047 1
CDS - ZP_05350532.1 CdifA_020200007192 putative amino acid amidase 95040 95834 -1
CDS - ZP_05350533.1 CdifA_020200007197 hypothetical protein 96399 96875 -1
CDS - ZP_05350534.1 CdifA_020200007202 putative peptidase 96976 98145 -1
CDS - ZP_05350535.1 CdifA_020200007207 putative muramoyltetrapeptide carboxypeptidase 98308 99171 1
CDS - ZP_05350536.1 CdifA_020200007212 hypothetical protein 99242 99835 1
CDS - ZP_05350537.1 CdifA_020200007217 hypothetical protein 100086 100721 -1
CDS - ZP_05350538.1 CdifA_020200007222 glycerophosphoryl diester phosphodiesterase 100801 101532 -1
CDS - ZP_05350539.1 CdifA_020200007227 putative nonribosomal peptide synthetase 101863 104052 1
CDS - ZP_05350540.1 CdifA_020200007232 putative oligopeptide transporter 104463 106391 1
CDS - ZP_05350541.1 CdifA_020200007237 hypothetical protein 106378 106725 1