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Clostridium difficile ATCC 43255, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05351928.1 CdifA_020200014296 polysaccharide deacetylase 279 1217 1
CDS - ZP_05351929.1 CdifA_020200014301 hypothetical protein 1589 2845 -1
CDS - ZP_05351930.1 CdifA_020200014306 hypothetical protein 2812 2961 -1
CDS - ZP_05351931.1 CdifA_020200014311 two-component sensor histidine kinase 3127 4449 -1
CDS - ZP_05351932.1 CdifA_020200014316 two-component response regulator 4442 5146 -1
CDS - ZP_05351933.1 CdifA_020200014321 hypothetical protein 5329 6330 -1
CDS - ZP_05351934.1 CdifA_020200014326 polysaccharide deacetylase 6397 7095 -1
CDS - ZP_05351935.1 CdifA_020200014331 putative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine 7086 8183 -1
CDS - ZP_05351936.1 CdifA_020200014336 putative serine hydroxymethyltransferase 8506 9750 -1
CDS - ZP_05351937.1 CdifA_020200014341 hypothetical protein 10078 10866 1
CDS - ZP_05351938.1 CdifA_020200014346 hypothetical protein 10866 11339 1
CDS - ZP_05351939.1 CdifA_020200014351 putative regulator of the sigma(E) factor 11431 11871 -1
CDS - ZP_05351940.1 CdifA_020200014356 hypothetical protein 11886 12179 -1
CDS - ZP_05351941.1 CdifA_020200014361 hypothetical protein 12222 12623 -1
CDS - ZP_05351942.1 CdifA_020200014366 putative sigma-54-interacting regulatory protein 12851 14971 1
CDS - ZP_05351943.1 CdifA_020200014371 putative aminotransferase 15196 16362 1
CDS - ZP_05351944.1 CdifA_020200014376 putative malate-2H(+)/Na(+)-lactate antiporter 16387 17829 1
CDS - ZP_05351945.1 CdifA_020200014381 hypothetical protein 17832 18101 1
CDS - ZP_05351946.1 CdifA_020200014386 cell surface protein 18179 19606 -1
CDS - ZP_05351947.1 CdifA_020200014391 LysR family transcriptional regulator 19978 20847 1
CDS - ZP_05351948.1 CdifA_020200014396 putative carbon-nitrogen hydrolase 20959 21765 -1
CDS - ZP_05351949.1 CdifA_020200014401 putative cytosine permease 21779 23011 -1
CDS - ZP_05351950.1 CdifA_020200014406 putative aspartyl-tRNA synthetase 23470 25257 -1
CDS - ZP_05351951.1 CdifA_020200014411 putative histidyl-tRNA synthetase 25331 26593 -1
CDS - ZP_05351952.1 CdifA_020200014416 coproporphyrinogen III oxidase 26583 28139 -1
CDS - ZP_05351953.1 CdifA_020200014421 putative hydrolase 28230 28844 -1
CDS - ZP_05351954.1 CdifA_020200014426 putative D-tyrosyl-tRNA protein 28859 29308 -1
CDS - ZP_05351955.1 CdifA_020200014431 putative GTP pyrophosphokinase 29333 31540 -1
CDS - ZP_05351956.1 CdifA_020200014436 adenine phosphoribosyltransferase 31614 32126 -1
CDS - ZP_05351957.1 CdifA_020200014441 putative single-stranded-DNA-specific exonuclease 32139 34589 -1
CDS - ZP_05351958.1 CdifA_020200014446 ubiquinone biosynthesis protein 34602 36266 -1
CDS - ZP_05351959.1 CdifA_020200014451 putative transferase 36564 37061 -1
CDS - ZP_05351960.1 CdifA_020200014456 putative radical SAM family protein 37090 38469 -1
CDS - ZP_05351961.1 CdifA_020200014461 autoinducer prepeptide 38774 38920 -1
CDS - ZP_05351962.1 CdifA_020200014466 accessory gene regulator 38950 39528 -1
CDS - ZP_05351963.1 CdifA_020200014471 hypothetical protein 39896 41326 -1
CDS - ZP_05351964.1 CdifA_020200014476 hypothetical protein 41670 42335 1
CDS - ZP_05351965.1 CdifA_020200014481 phosphoenolpyruvate-protein phosphotransferase 43127 44839 -1
CDS - ZP_05351966.1 CdifA_020200014486 PTS system, phosphocarrier protein 45192 45452 -1
CDS - ZP_05351967.1 CdifA_020200014491 putative phospholipase 45645 46856 -1
CDS - ZP_05351968.1 CdifA_020200014496 putative DNA modification methylase 47088 48821 -1
CDS - ZP_05351969.1 CdifA_020200014501 hypothetical protein 48861 49259 -1
CDS - ZP_05351970.1 CdifA_020200014506 putative signaling protein 49262 50809 -1
CDS - ZP_05351971.1 CdifA_020200014511 putative N-acetylmuramoyl-L-alanine amidase 51124 52029 -1
CDS - ZP_05351972.1 CdifA_020200014516 undecaprenyl pyrophosphate synthetase 52072 52716 -1
CDS - ZP_05351973.1 CdifA_020200014521 putative lipoprotein 52855 53325 1
CDS - ZP_05351974.1 CdifA_020200014526 putative hydrolase 53448 54236 -1
CDS - ZP_05351975.1 CdifA_020200014541 putative penicillin-binding protein repressor 55844 56809 1
CDS - ZP_05351976.1 CdifA_020200014546 cell surface protein 57007 59118 -1
CDS - ZP_05351977.1 CdifA_020200014551 putative cell-wall hydrolase 59420 60127 -1
CDS - ZP_05351978.1 CdifA_020200014556 capsular polysaccharide biosynthesis protein 60326 62239 -1
CDS - ZP_05351979.1 CdifA_020200014561 putative capsular polysaccharide biosynthesis glycosyl transferase 62323 63414 -1
CDS - ZP_05351980.1 CdifA_020200014566 putative UDP-glucose 6-dehydrogenase 63420 64787 -1
CDS - ZP_05351981.1 CdifA_020200014571 putative teichuronic acid biosynthesis glycosyl transferase 64741 65493 -1
CDS - ZP_05351982.1 CdifA_020200014576 putative beta-glycosyltransferase 65541 66449 -1
CDS - ZP_05351983.1 CdifA_020200014581 putative teichuronic acid biosynthesis glycosyl transferase 66471 67220 -1
CDS - ZP_05351984.1 CdifA_020200014586 putative minor teichoic acid biosynthesis protein 67249 68424 -1
CDS - ZP_05351985.1 CdifA_020200014591 putative glycosyl transferase 68439 69278 -1
CDS - ZP_05351986.1 CdifA_020200014596 putative polysaccharide polymerase 69281 70438 -1
CDS - ZP_05351987.1 CdifA_020200014601 putative polysaccharide biosynthesis protein 70454 71176 -1
CDS - ZP_05351988.1 CdifA_020200014606 putative mannose-1-phosphate guanylyltransferase 71188 72261 -1
CDS - ZP_05351989.1 CdifA_020200014611 putative phosphomannomutase/phosphoglycerate mutase 72283 73989 -1
CDS - ZP_05351990.1 CdifA_020200014616 putative transmembrane virulence factor MviN family protein 74035 75591 -1
CDS - ZP_05351991.1 CdifA_020200014621 cell surface protein 75706 76761 -1
CDS - ZP_05351992.1 CdifA_020200014626 putative glycosyltransferase 76856 77542 -1
CDS - ZP_05351993.1 CdifA_020200014631 cell surface protein 77762 79786 -1
CDS - ZP_05351994.1 CdifA_020200014636 hypothetical protein 80040 81491 -1
CDS - ZP_05351995.1 CdifA_020200014641 cell surface protein 81625 83202 -1
CDS - ZP_05351996.1 CdifA_020200014646 cell surface protein (putative cell surface-associated cysteine protease) 83499 85910 -1
CDS - ZP_05351997.1 CdifA_020200014651 putative cell wall teichoic acid glycosylation protein 86138 86533 1
CDS - ZP_05351998.1 CdifA_020200014656 cell surface protein 86581 88416 -1
CDS - ZP_05351999.1 CdifA_020200014661 hypothetical protein 88449 89156 -1
CDS - ZP_05352000.1 CdifA_020200014666 cell surface protein (putative S-layer protein precursor) 89263 91134 -1
CDS - ZP_05352001.1 CdifA_020200014671 preprotein translocase SecA subunit 91549 93894 -1
CDS - ZP_05352002.1 CdifA_020200014676 cell surface protein (S-layer precursor protein) 94130 96400 -1
CDS - ZP_05352003.1 CdifA_020200014681 surface surface protein 96612 98201 -1
CDS - ZP_05352004.1 CdifA_020200014686 cell surface protein 98420 100015 -1
CDS - ZP_05352005.1 CdifA_020200014691 cell surface protein 100389 102269 -1
CDS - ZP_05352006.1 CdifA_020200014696 hypothetical protein 102479 108442 -1
CDS - ZP_05352007.1 CdifA_020200014701 cell surface protein 108823 110226 -1
CDS - ZP_05352008.1 CdifA_020200014706 cell surface protein 110688 112583 -1
CDS - ZP_05352009.1 CdifA_020200014711 hypothetical protein 113210 113353 -1
CDS - ZP_05352010.1 CdifA_020200014716 hypothetical protein 113419 113781 -1
CDS - ZP_05352011.1 CdifA_020200014721 putative protein translocase subunit 113839 114132 -1
CDS - ZP_05352012.1 CdifA_020200014726 queuine tRNA-ribosyltransferase 114266 115387 -1
CDS - ZP_05352013.1 CdifA_020200014731 hypothetical protein 115466 115951 -1
CDS queA ZP_05352014.1 CdifA_020200014736 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 115963 116988 -1
CDS ruvB ZP_05352015.1 CdifA_020200014741 Holliday junction DNA helicase RuvB 117306 118325 -1
CDS ruvA ZP_05352016.1 CdifA_020200014746 Holliday junction DNA helicase RuvA 118432 119034 -1
CDS - ZP_05352017.1 CdifA_020200014751 crossover junction endodeoxyribonuclease RuvC 119027 119536 -1
CDS - ZP_05352018.1 CdifA_020200014756 hypothetical protein 119864 120493 -1
CDS - ZP_05352019.1 CdifA_020200014761 hypothetical protein 120696 121019 1
CDS - ZP_05352020.1 CdifA_020200014766 hypothetical protein 121287 122141 1
CDS - ZP_05352021.1 CdifA_020200014771 hypothetical protein 122327 123763 -1
CDS - ZP_05352022.1 CdifA_020200014776 putative gluconate permease 123834 125216 -1
CDS garR ZP_05352023.1 CdifA_020200014781 tartronate semialdehyde reductase 125352 126242 -1
CDS - ZP_05352024.1 CdifA_020200014786 GntR family transcriptional regulator 126653 127324 1
CDS - ZP_05352025.1 CdifA_020200014791 hypothetical protein 127436 127975 1
CDS - ZP_05352026.1 CdifA_020200014796 hypothetical protein 128237 128545 1
CDS - ZP_05352027.1 CdifA_020200014801 ABC transporter, ATP-binding/permease protein 128707 130497 -1