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Clostridium difficile NAP07 contig00031, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06902309.1 HMPREF0219_0832 division initiation protein 1 360 1
CDS sbp ZP_06902310.1 HMPREF0219_0833 small basic protein 459 812 1
CDS ftsZ ZP_06902311.1 HMPREF0219_0834 cell division protein FtsZ 999 2159 1
CDS - ZP_06902312.1 HMPREF0219_0835 ABC superfamily ATP binding cassette transporter, binding protein 2444 3718 1
CDS spoIIGA ZP_06902313.1 HMPREF0219_0836 sporulation factor SpoIIGA 4018 4890 1
CDS sigE ZP_06902314.1 HMPREF0219_0837 RNA polymerase sigma-E factor 4915 5637 1
CDS sigG ZP_06902315.1 HMPREF0219_0838 RNA polymerase sigma-G factor 5729 6502 1
CDS - ZP_06902316.1 HMPREF0219_0839 YlmC/YmxH family sporulation protein 6606 6869 1
CDS nrdR ZP_06902317.1 HMPREF0219_0840 transcriptional regulator NrdR 6891 7352 1
CDS - ZP_06902318.1 HMPREF0219_0841 hypothetical protein 7349 8110 1
CDS - ZP_06902319.1 HMPREF0219_0842 response regulator 8125 8817 1
CDS phoR ZP_06902320.1 HMPREF0219_0843 phosphate regulon sensor histidine kinase protein PhoR 8846 10135 1
CDS - ZP_06902321.1 HMPREF0219_0844 ABC superfamily ATP binding cassette transporter permease subunit 10190 11122 1
CDS - ZP_06902322.1 HMPREF0219_0845 possible spore envelope protein 11168 12100 1
CDS - ZP_06902323.1 HMPREF0219_0846 hypothetical protein 12093 12302 1
CDS - ZP_06902324.1 HMPREF0219_0847 PDZ domain protein 12526 13866 1
CDS engA ZP_06902325.1 HMPREF0219_0848 ribosome-associated GTPase EngA 13894 15219 1
CDS plsY ZP_06902326.1 HMPREF0219_0849 acyl-phosphate glycerol 3-phosphate acyltransferase 15253 15867 1
CDS glyC ZP_06902327.1 HMPREF0219_0850 glycerol-3-phosphate dehydrogenase (NAD(P)+) 15898 16917 1
CDS - ZP_06902328.1 HMPREF0219_0851 hypothetical protein 17073 17345 -1
CDS - ZP_06902329.1 HMPREF0219_0852 signal peptidase I V 17355 17537 1
CDS - ZP_06902330.1 HMPREF0219_0853 hypothetical protein 17674 17805 1
CDS spoIVA ZP_06902331.1 HMPREF0219_0854 stage IV sporulation protein A 17816 19291 1
CDS - ZP_06902332.1 HMPREF0219_0855 hypothetical protein 19474 21435 1
CDS - ZP_06902333.1 HMPREF0219_0856 ACT domain protein 21725 21994 1
CDS - ZP_06902334.1 HMPREF0219_0857 glycerol-3-phosphate dehydrogenase 22020 23375 1
CDS pfoR ZP_06902335.1 HMPREF0219_0858 perfringolysin O regulator protein 23831 24871 -1
CDS - ZP_06902336.1 HMPREF0219_0859 hypothetical protein 25251 25886 1
CDS ylmE ZP_06902337.1 HMPREF0219_0860 YggS family pyridoxal phosphate enzyme 25887 26600 1
CDS - ZP_06902338.1 HMPREF0219_0861 hypothetical protein 26639 27097 1
CDS - ZP_06902339.1 HMPREF0219_0862 hypothetical protein 27116 27373 1
CDS rps4 ZP_06902340.1 HMPREF0219_0863 possible ribosomal protein S4e 27383 28168 1
CDS divIVA ZP_06902341.1 HMPREF0219_0864 cell division initiation protein 28203 28730 1
CDS ileS ZP_06902342.1 HMPREF0219_0865 isoleucine--tRNA ligase 29229 32336 1
CDS - ZP_06902343.1 HMPREF0219_0866 hypothetical protein 32623 33495 1
CDS - ZP_06902344.1 HMPREF0219_0867 hypothetical protein 33546 33881 1
CDS - ZP_06902345.1 HMPREF0219_0868 TetR family transcriptional regulator 34044 34616 -1
CDS - ZP_06902346.1 HMPREF0219_0869 hypothetical protein 34800 35642 1
CDS - ZP_06902347.1 HMPREF0219_0870 possible Xaa-Pro dipeptidase 35745 36821 -1
CDS - ZP_06902348.1 HMPREF0219_0871 APC family amino acid-polyamine-organocation transporter 37318 38721 1
CDS mtnN ZP_06902349.1 HMPREF0219_0872 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 39095 39793 1
CDS trpS ZP_06902350.1 HMPREF0219_0873 tryptophan--tRNA ligase 39816 40817 1
CDS - ZP_06902351.1 HMPREF0219_0874 iota toxin component Ib 41469 44099 -1
CDS - ZP_06902352.1 HMPREF0219_0875 iota toxin component Ia 44152 45543 -1
CDS - ZP_06902353.1 HMPREF0219_0876 LytTr DNA-binding domain protein 45933 46352 -1
CDS - ZP_06902354.1 HMPREF0219_0877 CdtR family protein 46356 46679 -1
CDS - ZP_06902355.1 HMPREF0219_0878 two component sensor histidine kinase 47560 48762 1
CDS ypdB ZP_06902356.1 HMPREF0219_0879 two component response regulator 48767 49537 1
CDS cstA ZP_06902357.1 HMPREF0219_0880 carbon starvation protein CstA 49683 51104 1
CDS - ZP_06902358.1 HMPREF0219_0881 probable general stress protein 51370 51852 1
CDS - ZP_06902359.1 HMPREF0219_0882 polysaccharide deacetylase 51901 52680 1
CDS lspA ZP_06902360.1 HMPREF0219_0883 signal peptidase II 52839 53285 1
CDS rluD ZP_06902361.1 HMPREF0219_0884 ribosomal large subunit pseudouridine synthase D 53254 54201 1
CDS upp2 ZP_06902362.1 HMPREF0219_0885 uracil phosphoribosyltransferase 54560 55093 1
CDS pyrP ZP_06902363.1 HMPREF0219_0886 NCS family uracil:cation symporter 55376 56584 1
CDS expZ ZP_06902364.1 HMPREF0219_0887 ABC superfamily ATP binding cassette transporter, ABC protein 56755 58524 1
CDS fbpA ZP_06902365.1 HMPREF0219_0888 fibronectin-binding protein 58717 60492 -1
CDS ltaE ZP_06902366.1 HMPREF0219_0889 threonine aldolase 60788 61822 1
CDS dapF ZP_06902367.1 HMPREF0219_0890 diaminopimelate epimerase 62082 62939 1
CDS yicC ZP_06902368.1 HMPREF0219_0891 YicC protein 62943 63824 1
CDS gmk ZP_06902369.1 HMPREF0219_0892 guanylate kinase 63854 64471 1
CDS rpoZ ZP_06902370.1 HMPREF0219_0893 DNA-directed RNA polymerase subunit omega 64474 64740 1
CDS coaBC ZP_06902371.1 HMPREF0219_0894 coenzyme A biosynthesis bifunctional protein CoaBC 64745 65944 1
CDS priA ZP_06902372.1 HMPREF0219_0895 primosomal protein N 66183 68708 1
CDS def ZP_06902373.1 HMPREF0219_0896 peptide deformylase 68726 69166 1
CDS fmt ZP_06902374.1 HMPREF0219_0897 methionyl-tRNA formyltransferase 69181 70110 1
CDS - ZP_06902375.1 HMPREF0219_0898 hypothetical protein 70111 70872 1
CDS - ZP_06902376.1 HMPREF0219_0899 neutral zinc metallopeptidase 70941 71642 1
CDS sun2 ZP_06902377.1 HMPREF0219_0900 ribosomal RNA small subunit methyltransferase B 71704 73029 1
CDS - ZP_06902378.1 HMPREF0219_0901 cfr family radical SAM enzyme 73037 74068 1
CDS ptc ZP_06902379.1 HMPREF0219_0902 protein serine/threonine phosphatase 74088 74840 1
CDS sps ZP_06902380.1 HMPREF0219_0903 non-specific serine/threonine protein kinase 74857 76860 1
CDS fabG ZP_06902381.1 HMPREF0219_0904 3-oxoacyl-[acyl-carrier-protein] reductase 76968 77705 1
CDS rsgA2 ZP_06902382.1 HMPREF0219_0905 ribosome small subunit-dependent GTPase A 77803 78687 1
CDS rpe ZP_06902383.1 HMPREF0219_0906 ribulose-phosphate 3-epimerase 78692 79363 1
CDS - ZP_06902384.1 HMPREF0219_0907 thiamine diphosphokinase 79372 80013 1
CDS - ZP_06902385.1 HMPREF0219_0908 HAD-superfamily hydrolase 80144 80773 1
CDS - ZP_06902386.1 HMPREF0219_0909 nitroreductase 80828 81484 1
CDS - ZP_06902387.1 HMPREF0219_0910 response regulator 81801 82601 1
CDS - ZP_06902388.1 HMPREF0219_0911 sensor histidine kinase 82567 84903 1
CDS - ZP_06902389.1 HMPREF0219_0912 family 38 glycosyl hydrolase 85182 87860 -1
CDS - ZP_06902390.1 HMPREF0219_0913 PTS family fructose/mannitol (fru) porter component IIC 87934 89040 -1
CDS frwB3 ZP_06902391.1 HMPREF0219_0914 PTS family fructose porter, IIB component 89155 89463 -1
CDS - ZP_06902392.1 HMPREF0219_0915 PTS family fructose/mannitol (fru) porter component IIA 89466 89936 -1
CDS - ZP_06902393.1 HMPREF0219_0916 probable transcriptional antiterminator 90153 92081 1
CDS tipA ZP_06902394.1 HMPREF0219_0917 MerR family transcriptional regulator 92340 93101 -1
CDS - ZP_06902395.1 HMPREF0219_0918 hypothetical protein 93320 93796 1
CDS - ZP_06902396.1 HMPREF0219_0919 2-oxoglutarate/malate translocator 93852 94046 1
CDS rpmB ZP_06902397.1 HMPREF0219_0920 50S ribosomal protein L28 94206 94394 -1
CDS - ZP_06902398.1 HMPREF0219_0921 probable alkaline shock protein 94755 95105 1
CDS degV ZP_06902399.1 HMPREF0219_0922 DAK2 domain protein 95124 96767 1
CDS recG ZP_06902400.1 HMPREF0219_0923 DNA helicase RecG 96848 98905 1
CDS - ZP_06902401.1 HMPREF0219_0924 RsmD family RNA methyltransferase 98964 99518 1
CDS coaD ZP_06902402.1 HMPREF0219_0925 phosphopantetheine adenylyltransferase 99520 100017 1
CDS - ZP_06902403.1 HMPREF0219_0926 hypothetical protein 100021 100545 1
CDS - ZP_06902404.1 HMPREF0219_0927 sugar ABC superfamily ATP binding cassette transporter, substrate-binding protein 100974 102266 1
CDS - ZP_06902405.1 HMPREF0219_0928 sugar ABC superfamily ATP binding cassette transporter, membrane protein 102364 103281 1
CDS malG ZP_06902406.1 HMPREF0219_0929 sugar ABC superfamily ATP binding cassette transporter, membrane protein 103297 104106 1
CDS - ZP_06902407.1 HMPREF0219_0930 hypothetical protein 104163 104326 1