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Clostridium difficile NAP07 contig00034, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS cas ZP_06902503.1 HMPREF0219_1026 CRISPR-associated protein cas6 72 809 1
CDS - ZP_06902504.1 HMPREF0219_1027 hypothetical protein 814 2280 1
CDS cst2 ZP_06902505.1 HMPREF0219_1028 devr family CRISPR-associated regulatory protein 2299 3312 1
CDS cas3 ZP_06902506.1 HMPREF0219_1029 CRISPR-associated protein cas5 3328 4125 1
CDS - ZP_06902507.1 HMPREF0219_1030 probable ATP-dependent helicase 4152 6560 1
CDS prmA ZP_06902508.1 HMPREF0219_1031 ribosomal protein L11 methyltransferase 6999 7946 1
CDS - ZP_06902509.1 HMPREF0219_1032 RsmE family RNA methyltransferase 7965 8723 1
CDS miaB ZP_06902510.1 HMPREF0219_1033 2-methylthioadenine synthetase 8725 10023 1
CDS hinT ZP_06902511.1 HMPREF0219_1034 purine nucleoside phosphoramidase 10066 10416 1
CDS rpsU ZP_06902512.1 HMPREF0219_1035 30S ribosomal protein S21 10579 10758 1
CDS - ZP_06902513.1 HMPREF0219_1036 GatB/YqeY domain protein 10779 11231 1
CDS - ZP_06902514.1 HMPREF0219_1037 TspO/MBR family protein 11342 11839 1
CDS yfiA2 ZP_06902515.1 HMPREF0219_1038 ribosomal subunit interface protein 12032 12589 1
CDS - ZP_06902516.1 HMPREF0219_1039 hypothetical protein 12797 13039 1
CDS yqfD ZP_06902517.1 HMPREF0219_1040 sporulation protein YqfD 13052 14377 1
CDS - ZP_06902518.1 HMPREF0219_1041 PhoH family protein 14334 15431 1
CDS - ZP_06902519.1 HMPREF0219_1042 metal-dependent hydrolase 15488 15949 1
CDS dgkA ZP_06902520.1 HMPREF0219_1043 diacylglycerol kinase 15955 16674 1
CDS cdd ZP_06902521.1 HMPREF0219_1044 cytidine deaminase 16772 17194 1
CDS era ZP_06902522.1 HMPREF0219_1045 GTP-binding protein Era 17259 18152 1
CDS mgtE ZP_06902523.1 HMPREF0219_1046 MgtE family magnesium transporter 18164 19543 1
CDS - ZP_06902524.1 HMPREF0219_1047 hypothetical protein 19616 19771 1
CDS recO ZP_06902525.1 HMPREF0219_1048 recombination protein O 19737 20510 1
CDS - ZP_06902526.1 HMPREF0219_1049 hypothetical protein 20500 21102 1
CDS glyQ ZP_06902527.1 HMPREF0219_1050 glycyl-tRNA synthetase alpha subunit 21262 22140 1
CDS glyS ZP_06902528.1 HMPREF0219_1051 glycyl-tRNA synthetase beta subunit 22140 24206 1
CDS - ZP_06902529.1 HMPREF0219_1052 ferredoxin-nitrite reductase 24373 25920 -1
CDS - ZP_06902530.1 HMPREF0219_1053 IclR family transcriptional regulator 26200 26967 1
CDS - ZP_06902531.1 HMPREF0219_1054 probable oxidoreductase ferredoxin subunit 27252 27449 1
CDS vorB2 ZP_06902532.1 HMPREF0219_1055 2-oxoglutarate oxidoreductase alpha subunit 27436 28554 1
CDS - ZP_06902533.1 HMPREF0219_1056 keto/oxoacid ferredoxin oxidoreductase 28557 29276 1
CDS - ZP_06902534.1 HMPREF0219_1057 probable oxidoreductase subunit 29289 29828 1
CDS buk3 ZP_06902535.1 HMPREF0219_1058 butyrate kinase 29937 31043 1
CDS ptb2 ZP_06902536.1 HMPREF0219_1059 phosphate butyryltransferase 31061 31954 1
CDS - ZP_06902537.1 HMPREF0219_1060 possible aromatic-amino-acid transaminase 31984 33192 1
CDS - ZP_06902538.1 HMPREF0219_1061 major facilitator family transporter 33216 34475 1
CDS alsT ZP_06902539.1 HMPREF0219_1062 amino acid carrier protein 35105 36583 1
CDS amaA2 ZP_06902540.1 HMPREF0219_1063 amidohydrolase 36621 37775 1
CDS - ZP_06902541.1 HMPREF0219_1064 C4-dicarboxylate anaerobic carrier 37800 39218 1
CDS - ZP_06902542.1 HMPREF0219_1065 choloylglycine hydrolase 39430 40548 1
CDS - ZP_06902543.1 HMPREF0219_1066 transcriptional regulator 40699 41568 1
CDS srlA ZP_06902544.1 HMPREF0219_1067 PTS family glucitol (glu) porter component IIC 41943 42488 1
CDS srlE ZP_06902545.1 HMPREF0219_1068 PTS family glucitol/sorbitol porter, IIB component 42501 43514 1
CDS - ZP_06902546.1 HMPREF0219_1069 probable transcription antiterminator 43736 45709 1
CDS - ZP_06902547.1 HMPREF0219_1070 glucitol operon activator protein 45779 46138 1
CDS - ZP_06902548.1 HMPREF0219_1071 PTS family porter, enzyme I 46173 46529 1
CDS hom ZP_06902549.1 HMPREF0219_1072 homoserine dehydrogenase 46566 47858 1
CDS - ZP_06902550.1 HMPREF0219_1073 CBS domain protein 48294 48932 1
CDS - ZP_06902551.1 HMPREF0219_1074 protein of hypothetical function DUF299 48939 49781 1
CDS ppdK ZP_06902552.1 HMPREF0219_1075 pyruvate phosphate dikinase 49827 52469 1
CDS - ZP_06902553.1 HMPREF0219_1076 hypothetical protein 52659 52928 1
CDS - ZP_06902554.1 HMPREF0219_1077 probable multidrug efflux pump, outer membrane protein 53218 54537 -1
CDS - ZP_06902555.1 HMPREF0219_1078 RND superfamily resistance-nodulation-cell division antiporter 54550 57684 -1
CDS - ZP_06902556.1 HMPREF0219_1079 probable lipoprotein 57688 58935 -1
CDS - ZP_06902557.1 HMPREF0219_1080 MarR family transcriptional regulator 59163 59648 1
CDS topB ZP_06902558.1 HMPREF0219_1081 DNA topoisomerase TopB 59759 61987 -1
CDS dut ZP_06902559.1 HMPREF0219_1082 dUTP diphosphatase 62100 62531 1
CDS - ZP_06902560.1 HMPREF0219_1083 probable cell wall hydrolase 62791 63981 1
CDS cotJC3 ZP_06902561.1 HMPREF0219_1084 CotJC protein 64219 64791 -1
CDS cotJB2 ZP_06902562.1 HMPREF0219_1085 probable spore-coat protein 64820 65086 -1
CDS - ZP_06902563.1 HMPREF0219_1086 hypothetical protein 65086 65295 -1
CDS - ZP_06902564.1 HMPREF0219_1087 PP-loop family protein 65564 66424 1
CDS - ZP_06902565.1 HMPREF0219_1088 exonuclease superfamily protein 66463 67500 1
CDS - ZP_06902566.1 HMPREF0219_1089 hypothetical protein 67864 68370 1
CDS - ZP_06902567.1 HMPREF0219_1090 MORN repeat protein 68783 69451 1
CDS - ZP_06902568.1 HMPREF0219_1091 epsilon subunit family exonuclease 69610 70116 1
CDS - ZP_06902569.1 HMPREF0219_1092 probable transglycosylase 70244 71260 1
CDS - ZP_06902570.1 HMPREF0219_1093 B3/4 domain protein 71616 72320 1
CDS - ZP_06902571.1 HMPREF0219_1094 hypothetical protein 72407 72562 -1
CDS - ZP_06902572.1 HMPREF0219_1095 hypothetical protein 72612 73094 1
CDS - ZP_06902573.1 HMPREF0219_1096 BlaI/MecI/CopY family transcriptional regulator 73730 74107 1
CDS - ZP_06902574.1 HMPREF0219_1097 probable beta-lactamase inducer 74100 75134 1
CDS - ZP_06902575.1 HMPREF0219_1098 probable peptidoglycan-binding/hydrolyzing protein 75200 75787 1
CDS - ZP_06902576.1 HMPREF0219_1099 ISDet4 transposase 76003 76200 -1
CDS - ZP_06902577.1 HMPREF0219_1100 BlaI/MecI/CopY family transcriptional regulator 77033 77410 1
CDS - ZP_06902578.1 HMPREF0219_1101 probable beta-lactamase inducer 77403 78437 1
CDS - ZP_06902579.1 HMPREF0219_1102 probable peptidoglycan-binding/hydrolyzing protein 78499 79101 1
CDS - ZP_06902580.1 HMPREF0219_1103 possible (S)-2-hydroxy-acid oxidase 79235 80251 -1
CDS - ZP_06902581.1 HMPREF0219_1104 hypothetical protein 80581 80763 -1
CDS - ZP_06902582.1 HMPREF0219_1105 hypothetical protein 81079 81498 1
CDS - ZP_06902583.1 HMPREF0219_1106 probable signaling protein 81629 83470 1
CDS - ZP_06902584.1 HMPREF0219_1107 probable signaling protein 83512 85383 1
CDS - ZP_06902585.1 HMPREF0219_1108 probable sigma-54 interacting regulatory protein 85391 87391 1
CDS - ZP_06902586.1 HMPREF0219_1109 aspartate/aromatic aminotransferase 87653 88912 1
CDS iorA ZP_06902587.1 HMPREF0219_1110 isoquinoline 1-oxidoreductase, alpha subunit 88973 90760 1
CDS iorB ZP_06902588.1 HMPREF0219_1111 isoquinoline 1-oxidoreductase, beta subunit 90762 91337 1
CDS buk4 ZP_06902589.1 HMPREF0219_1112 butyrate kinase 91390 92460 1
CDS - ZP_06902590.1 HMPREF0219_1113 membrane protein 92676 93377 1
CDS - ZP_06902591.1 HMPREF0219_1114 NUDIX-family protein 93437 93943 1
CDS - ZP_06902592.1 HMPREF0219_1115 hypothetical protein 94116 95138 1
CDS - ZP_06902593.1 HMPREF0219_1116 hypothetical protein 95283 95591 -1
CDS - ZP_06902594.1 HMPREF0219_1117 hypothetical protein 95651 96079 -1
CDS cstA2 ZP_06902595.1 HMPREF0219_1118 carbon starvation protein CstA 96300 97829 -1
CDS nadA ZP_06902596.1 HMPREF0219_1119 quinolinate synthetase 98175 99089 1
CDS nadB ZP_06902597.1 HMPREF0219_1120 L-aspartate oxidase 99102 100403 1
CDS nadC ZP_06902598.1 HMPREF0219_1121 nicotinate-nucleotide diphosphorylase (carboxylating) 100384 101220 1
CDS - ZP_06902599.1 HMPREF0219_1122 hypothetical protein 101478 101810 1
CDS - ZP_06902600.1 HMPREF0219_1123 hypothetical protein 101972 102157 1
CDS - ZP_06902601.1 HMPREF0219_1124 probable permease 102185 103270 1
CDS - ZP_06902602.1 HMPREF0219_1125 hypothetical protein 103263 103721 1