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Clostridium difficile NAP07 contig00217, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06903763.1 HMPREF0219_2286 siroheme synthase domain protein 41 619 -1
CDS hemB ZP_06903764.1 HMPREF0219_2287 porphobilinogen synthase 762 1733 -1
CDS hemD ZP_06903765.1 HMPREF0219_2288 uroporphyrinogen-III synthase 1750 3258 -1
CDS hemC ZP_06903766.1 HMPREF0219_2289 hydroxymethylbilane synthase 3239 4144 -1
CDS cbiK ZP_06903767.1 HMPREF0219_2290 cobalt ABC superfamily ATP binding cassette transporter, binding protein 4174 5652 -1
CDS cobK ZP_06903768.1 HMPREF0219_2291 precorrin-6x reductase 5671 6423 -1
CDS cobJ ZP_06903769.1 HMPREF0219_2292 precorrin-3B C(17)-methyltransferase 6420 7145 -1
CDS - ZP_06903770.1 HMPREF0219_2293 cobalamin biosynthesis protein CbiG 7142 8263 -1
CDS cobM ZP_06903771.1 HMPREF0219_2294 precorrin-4 C(11)-methyltransferase 8247 9005 -1
CDS cobL ZP_06903772.1 HMPREF0219_2295 precorrin-6y c5,15-methyltransferase 8992 9567 -1
CDS cbiE ZP_06903773.1 HMPREF0219_2296 precorrin-6y C5,15-methyltransferase 9557 10165 -1
CDS cbiD ZP_06903774.1 HMPREF0219_2297 cobalamin biosynthesis protein CbiD 10162 11388 -1
CDS cobH ZP_06903775.1 HMPREF0219_2298 possible precorrin-8X methylmutase 11397 12029 -1
CDS - ZP_06903776.1 HMPREF0219_2299 probable cobalamin biosynthesis kinase 12017 12913 -1
CDS cobD ZP_06903777.1 HMPREF0219_2300 threonine-phosphate decarboxylase 12906 13970 -1
CDS cobD2 ZP_06903778.1 HMPREF0219_2301 cobalamin biosynthesis protein CobD 14002 14973 -1
CDS cobB ZP_06903779.1 HMPREF0219_2302 cobyrinic Acid a,c-diamide synthase 14974 16389 -1
CDS cobQ ZP_06903780.1 HMPREF0219_2303 cobyric acid synthase CobQ 16389 17903 -1
CDS - ZP_06903781.1 HMPREF0219_2304 possible fructose-2,6-bisphosphate 2-phosphatase 18264 18878 -1
CDS cobS ZP_06903782.1 HMPREF0219_2305 cobalamin 5'-phosphate synthase 18898 19671 -1
CDS cobP ZP_06903783.1 HMPREF0219_2306 adenosylcobinamide-phosphate guanylyltransferase 19681 20295 -1
CDS cobT ZP_06903784.1 HMPREF0219_2307 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 20273 21319 -1
CDS - ZP_06903785.1 HMPREF0219_2308 evolved beta-galactosidase beta-subunit 21539 21730 1
CDS - ZP_06903786.1 HMPREF0219_2309 hypothetical protein 21771 21905 -1
CDS lacX ZP_06903787.1 HMPREF0219_2310 aldose epimerase 22124 22996 1
CDS patB ZP_06903788.1 HMPREF0219_2311 aminotransferase 23193 24380 -1
CDS - ZP_06903789.1 HMPREF0219_2312 possible Xaa-Pro dipeptidase 24385 25455 -1
CDS - ZP_06903790.1 HMPREF0219_2313 PTS family oligomeric beta-glucoside porter component IIC 25465 26787 -1
CDS licB2 ZP_06903791.1 HMPREF0219_2314 PTS family lichenan porter component IIB 26819 27154 -1
CDS - ZP_06903792.1 HMPREF0219_2315 PTS family lactose-N,N-diacetylchitobiose-beta-glucoside (lac) porter component IIA 27251 27556 -1
CDS celM ZP_06903793.1 HMPREF0219_2316 exoaminopeptidase 27571 28614 -1
CDS - ZP_06903794.1 HMPREF0219_2317 probable transcription antiterminator 28617 30518 -1
CDS kbaY ZP_06903795.1 HMPREF0219_2318 tagatose-bisphosphate aldolase 30847 31698 -1
CDS agaS ZP_06903796.1 HMPREF0219_2319 sugar isomerase protein AgaS 31747 32916 -1
CDS - ZP_06903797.1 HMPREF0219_2320 virulence factor MviM 33388 34305 1
CDS lacC ZP_06903798.1 HMPREF0219_2321 possible tagatose-6-phosphate kinase 34434 35363 -1
CDS - ZP_06903799.1 HMPREF0219_2322 GntR family transcriptional regulator 35633 36358 1
CDS manD ZP_06903800.1 HMPREF0219_2323 N-acetylglucosamine-6-phosphate deacetylase 36441 37595 1
CDS - ZP_06903801.1 HMPREF0219_2324 probable exported carboxy-terminal processing protease 37777 38934 -1
CDS fthC ZP_06903802.1 HMPREF0219_2325 5-formyltetrahydrofolate cyclo-ligase 39088 39657 1
CDS - ZP_06903803.1 HMPREF0219_2326 hypothetical protein 39839 40273 -1
CDS - ZP_06903804.1 HMPREF0219_2327 YkoY family integral membrane protein 40481 41575 -1
CDS tkt ZP_06903805.1 HMPREF0219_2328 transketolase 41997 42938 -1
CDS tkt2 ZP_06903806.1 HMPREF0219_2329 transketolase, thiamine diphosphate-binding subunit 42931 43758 -1
CDS - ZP_06903807.1 HMPREF0219_2330 PemK family growth inhibitor 43929 44312 -1
CDS - ZP_06903808.1 HMPREF0219_2331 CopG-family transcriptional regulator 44281 44568 -1
CDS alr ZP_06903809.1 HMPREF0219_2332 alanine racemase 44601 45758 -1
CDS - ZP_06903810.1 HMPREF0219_2333 probable lipoprotein 45773 46363 -1
CDS - ZP_06903811.1 HMPREF0219_2334 CBS domain protein 46384 46845 -1
CDS acpS ZP_06903812.1 HMPREF0219_2335 holo-[acyl-carrier-protein] synthase 46860 47240 -1
CDS - ZP_06903813.1 HMPREF0219_2336 ATP synthase 47693 47953 -1
CDS atpD ZP_06903814.1 HMPREF0219_2337 ATP synthase F1 sector beta subunit 47956 49350 -1
CDS atpG ZP_06903815.1 HMPREF0219_2338 ATP synthase F1 sector gamma subunit 49363 50241 -1
CDS atpA ZP_06903816.1 HMPREF0219_2339 ATP synthase F1 sector alpha subunit 50269 51771 -1
CDS atpH ZP_06903817.1 HMPREF0219_2340 ATP synthase F1 sector delta subunit 51788 52333 -1
CDS atpF ZP_06903818.1 HMPREF0219_2341 ATP synthase F0 sector subunit B 52330 52845 -1
CDS atpE ZP_06903819.1 HMPREF0219_2342 ATP synthase F0 sector subunit C 52950 53210 -1
CDS atpB ZP_06903820.1 HMPREF0219_2343 ATP synthase F0 sector subunit A 53279 53983 -1
CDS - ZP_06903821.1 HMPREF0219_2344 ATP synthase protein I 53986 54372 -1
CDS atpZ ZP_06903822.1 HMPREF0219_2345 probable ATP synthase protein 54377 54604 -1
CDS comEB ZP_06903823.1 HMPREF0219_2346 cytidine/deoxycytidylate deaminase 54789 55226 -1
CDS - ZP_06903824.1 HMPREF0219_2347 hypothetical protein 55198 55455 1
CDS - ZP_06903825.1 HMPREF0219_2348 YqeB family selenium-dependent molybdenum hydroxylase system protein 55452 56267 -1
CDS upp ZP_06903826.1 HMPREF0219_2349 uracil phosphoribosyltransferase 56567 57196 -1
CDS rpiB ZP_06903827.1 HMPREF0219_2350 ribose-5-phosphate isomerase 57232 57684 -1
CDS ywlE ZP_06903828.1 HMPREF0219_2351 possible protein-tyrosine-phosphatase 57701 58150 -1
CDS sua ZP_06903829.1 HMPREF0219_2352 Sua5/YciO/YrdC/YwlC family protein 58167 59228 -1
CDS - ZP_06903830.1 HMPREF0219_2353 probable zinc transporter 59236 59916 -1
CDS prfA ZP_06903831.1 HMPREF0219_2354 peptide chain release factor RF1 60045 61109 -1
CDS prmC ZP_06903832.1 HMPREF0219_2355 protein-(glutamine-N5) methyltransferase 61153 62001 -1
CDS - ZP_06903833.1 HMPREF0219_2356 metal dependent enzyme 62019 62912 -1
CDS rpmE ZP_06903834.1 HMPREF0219_2357 50S ribosomal protein L31 63057 63257 -1
CDS rho ZP_06903835.1 HMPREF0219_2358 transcription termination factor Rho 63410 65014 -1
CDS gtaB ZP_06903836.1 HMPREF0219_2359 UTP--glucose-1-phosphate uridylyltransferase 65514 66494 -1
CDS pepF2 ZP_06903837.1 HMPREF0219_2360 oligoendopeptidase F 66593 68431 -1
CDS pphA ZP_06903838.1 HMPREF0219_2361 serine/threonine protein phosphatase 1 68836 71208 -1
CDS - ZP_06903839.1 HMPREF0219_2362 ppx/GppA phosphatase 71298 72218 -1
CDS - ZP_06903840.1 HMPREF0219_2363 probable septum formation protein 72331 72615 -1
CDS - ZP_06903841.1 HMPREF0219_2364 hypothetical protein 72621 73154 -1
CDS - ZP_06903842.1 HMPREF0219_2365 hypothetical protein 73155 73409 -1
CDS - ZP_06903843.1 HMPREF0219_2366 S4 domain protein 73471 73713 -1
CDS hup ZP_06903844.1 HMPREF0219_2367 DNA-binding protein HU 73785 74063 -1
CDS - ZP_06903845.1 HMPREF0219_2368 tetrapyrrole methylase/MazG family protein 74152 75627 -1
CDS - ZP_06903846.1 HMPREF0219_2369 stage V sporulation protein B 75707 77320 -1
CDS spoVT ZP_06903847.1 HMPREF0219_2370 stage V sporulation protein T 77440 77997 -1
CDS prsA ZP_06903848.1 HMPREF0219_2371 peptidyl-prolyl cis-trans isomerase 78102 79067 -1
CDS trcF ZP_06903849.1 HMPREF0219_2372 transcription-repair coupling factor 79128 82514 -1
CDS pth ZP_06903850.1 HMPREF0219_2373 aminoacyl-tRNA hydrolase 82531 83091 -1
CDS - ZP_06903851.1 HMPREF0219_2374 brp/Blh family beta-carotene 15,15'-monooxygenase 83105 83755 -1
CDS hofD ZP_06903852.1 HMPREF0219_2375 possible prepilin peptidase 83857 84639 -1
CDS ispE ZP_06903853.1 HMPREF0219_2376 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 84620 85702 -1
CDS - ZP_06903854.1 HMPREF0219_2377 hypothetical protein 85802 87340 -1
CDS - ZP_06903855.1 HMPREF0219_2378 probable type IV pilin 87361 87888 -1
CDS - ZP_06903856.1 HMPREF0219_2379 probable type IV pilin 87924 88490 -1
CDS - ZP_06903857.1 HMPREF0219_2380 probable type IV pilus assembly protein 88517 89425 -1
CDS - ZP_06903858.1 HMPREF0219_2381 fimbrial assembly protein 89418 91130 -1
CDS - ZP_06903859.1 HMPREF0219_2382 type IV pilus assembly protein 91145 92353 -1
CDS pilB ZP_06903860.1 HMPREF0219_2383 type IV pilus assembly protein PilB 92365 94050 -1
CDS - ZP_06903861.1 HMPREF0219_2384 pilin protein 94192 94713 -1
CDS prs ZP_06903862.1 HMPREF0219_2385 phosphoribosyl pyrophosphate synthetase 95798 96748 -1