• Summary page

Sequences

• contig00005, whole genome shotgun sequence
• contig00006, whole genome shotgun sequence
• contig00007, whole genome shotgun sequence
• contig00008, whole genome shotgun sequence
• contig00009, whole genome shotgun sequence
• contig00010, whole genome shotgun sequence
• contig00011, whole genome shotgun sequence
• contig00012, whole genome shotgun sequence
• contig00013, whole genome shotgun sequence
• contig00014, whole genome shotgun sequence
• contig00015, whole genome shotgun sequence
• contig00016, whole genome shotgun sequence
• contig00017, whole genome shotgun sequence
• contig00018, whole genome shotgun sequence
• contig00019, whole genome shotgun sequence
• contig00020, whole genome shotgun sequence
• contig00021, whole genome shotgun sequence
• contig00022, whole genome shotgun sequence
• contig00023, whole genome shotgun sequence
• contig00024, whole genome shotgun sequence
• contig00025, whole genome shotgun sequence
• contig00026, whole genome shotgun sequence
• contig00027, whole genome shotgun sequence
• contig00028, whole genome shotgun sequence
• contig00030, whole genome shotgun sequence
• contig00031, whole genome shotgun sequence
• contig00032, whole genome shotgun sequence
• contig00033, whole genome shotgun sequence
• contig00034, whole genome shotgun sequence
• contig00035, whole genome shotgun sequence
• contig00036, whole genome shotgun sequence
• contig00037, whole genome shotgun sequence
• contig00038, whole genome shotgun sequence
• contig00039, whole genome shotgun sequence
• contig00040, whole genome shotgun sequence
• contig00041, whole genome shotgun sequence
• contig00042, whole genome shotgun sequence
• contig00043, whole genome shotgun sequence
• contig00044, whole genome shotgun sequence
• contig00045, whole genome shotgun sequence
• contig00046, whole genome shotgun sequence
• contig00048, whole genome shotgun sequence
• contig00049, whole genome shotgun sequence
• contig00052, whole genome shotgun sequence
• contig00053, whole genome shotgun sequence
• contig00058, whole genome shotgun sequence
• contig00075, whole genome shotgun sequence
• contig00084, whole genome shotgun sequence
• contig00159, whole genome shotgun sequence
• contig00166, whole genome shotgun sequence
• contig00207, whole genome shotgun sequence
• contig00208, whole genome shotgun sequence
• contig00209, whole genome shotgun sequence
• contig00210, whole genome shotgun sequence
• contig00211, whole genome shotgun sequence
• contig00212, whole genome shotgun sequence
• contig00213, whole genome shotgun sequence
• contig00214, whole genome shotgun sequence
• contig00215, whole genome shotgun sequence
• contig00216, whole genome shotgun sequence
• contig00217, whole genome shotgun sequence
• contig00218, whole genome shotgun sequence
• contig00219, whole genome shotgun sequence
• contig00220, whole genome shotgun sequence
• contig00221, whole genome shotgun sequence
• contig00224, whole genome shotgun sequence
• contig00227, whole genome shotgun sequence
• contig00228, whole genome shotgun sequence
• contig00229, whole genome shotgun sequence
• contig00230, whole genome shotgun sequence
• contig00231, whole genome shotgun sequence
• contig00232, whole genome shotgun sequence
• contig00233, whole genome shotgun sequence
• contig00237, whole genome shotgun sequence
• contig00244, whole genome shotgun sequence
• contig00245, whole genome shotgun sequence
• contig00246, whole genome shotgun sequence
• contig00252, whole genome shotgun sequence
• contig00253, whole genome shotgun sequence
• contig00254, whole genome shotgun sequence
• contig00255, whole genome shotgun sequence
• contig00256, whole genome shotgun sequence
• contig00257, whole genome shotgun sequence
• contig00258, whole genome shotgun sequence
• contig00259, whole genome shotgun sequence
• contig00260, whole genome shotgun sequence
• contig00261, whole genome shotgun sequence
• contig00262, whole genome shotgun sequence
• contig00263, whole genome shotgun sequence
• contig00264, whole genome shotgun sequence
• contig00265, whole genome shotgun sequence
• contig00266, whole genome shotgun sequence
• contig00267, whole genome shotgun sequence
• contig00270, whole genome shotgun sequence
• contig00272, whole genome shotgun sequence
• contig00273, whole genome shotgun sequence
• contig00275, whole genome shotgun sequence
• contig00276, whole genome shotgun sequence
• contig00278, whole genome shotgun sequence
• contig00281, whole genome shotgun sequence

Taxonomy

cellular organisms
» Bacteria
» Firmicutes
» Clostridia
» Clostridiales
» Clostridiaceae
» Clostridium
» Clostridium difficile

Clostridium difficile NAP07

kdgA - possible 4-hydroxy-2-oxoglutarate aldolase

Analysis Tools

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve kdgA nucleotide sequence in FASTA format

Retrieve kdgA protein sequence in FASTA format

Retrieve HMPREF0219_2502 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF0219_2502 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile )

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Annotation

Product:

possible 4-hydroxy-2-oxoglutarate aldolase

GenBank ID: ZP_06903979.1

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