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Clostridium difficile NAP07 contig00220, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS carB5 ZP_06903939.1 HMPREF0219_2462 carbamoyl phosphate synthase large subunit 1 2202 -1
CDS carA ZP_06903940.1 HMPREF0219_2463 carbamoyl-phosphate synthase, small subunit 2255 3298 -1
CDS pyrF ZP_06903941.1 HMPREF0219_2464 orotidine-5'-phosphate decarboxylase 3324 4040 -1
CDS - ZP_06903942.1 HMPREF0219_2465 metal-binding protein 4416 5051 -1
CDS - ZP_06903943.1 HMPREF0219_2466 hypothetical protein 5075 5989 -1
CDS pepS ZP_06903944.1 HMPREF0219_2467 aminopeptidase PepS 6591 7820 1
CDS metH ZP_06903945.1 HMPREF0219_2468 methionine synthase 8025 10460 -1
CDS - ZP_06903946.1 HMPREF0219_2469 hypothetical protein 10378 11103 -1
CDS luxS ZP_06903947.1 HMPREF0219_2470 S-ribosylhomocysteine lyase 11093 11548 -1
CDS vanS ZP_06903948.1 HMPREF0219_2471 sensor histidine kinase VanS 11830 13011 -1
CDS - ZP_06903949.1 HMPREF0219_2472 response regulator 13001 13693 -1
CDS - ZP_06903950.1 HMPREF0219_2473 serine-type D-Ala-D-Ala carboxypeptidase 13827 14543 -1
CDS - ZP_06903951.1 HMPREF0219_2474 ExsB family protein 14669 15403 1
CDS - ZP_06903952.1 HMPREF0219_2475 phosphoesterase 15688 16443 -1
CDS - ZP_06903953.1 HMPREF0219_2476 3-beta hydroxysteroid dehydrogenase/isomerase 16565 17503 -1
CDS nt5e ZP_06903954.1 HMPREF0219_2477 5'-nucleotidase 17606 18256 -1
CDS - ZP_06903955.1 HMPREF0219_2478 ferredoxin 18406 18594 -1
CDS - ZP_06903956.1 HMPREF0219_2479 possible metal-dependent hydrolase 18701 19885 -1
CDS - ZP_06903957.1 HMPREF0219_2480 ABC superfamily ATP binding cassette transporter system permease 20022 20939 -1
CDS - ZP_06903958.1 HMPREF0219_2481 ABC superfamily ATP binding cassette transporter ABC protein 20961 21689 -1
CDS - ZP_06903959.1 HMPREF0219_2482 hypothetical protein 21885 22085 -1
CDS gloA ZP_06903960.1 HMPREF0219_2483 lactoylglutathione lyase 22210 22602 -1
CDS - ZP_06903961.1 HMPREF0219_2484 hypothetical protein 22753 22887 -1
CDS - ZP_06903962.1 HMPREF0219_2485 mate efflux family protein 22863 24221 -1
CDS - ZP_06903963.1 HMPREF0219_2486 hypothetical protein 24505 24957 1
CDS - ZP_06903964.1 HMPREF0219_2487 hypothetical protein 25113 25730 -1
CDS - ZP_06903965.1 HMPREF0219_2488 MerR family transcriptional regulator 26138 26950 -1
CDS - ZP_06903966.1 HMPREF0219_2489 sodium/hydrogen exchanger family/TrkA domain protein 27026 28444 -1
CDS - ZP_06903967.1 HMPREF0219_2490 Zn-dependent protease 28927 29844 -1
CDS - ZP_06903968.1 HMPREF0219_2491 hypothetical protein 30106 30483 1
CDS - ZP_06903969.1 HMPREF0219_2492 GNAT family acetyltransferase 30640 31089 -1
CDS - ZP_06903970.1 HMPREF0219_2493 hypothetical protein 31265 31669 -1
CDS - ZP_06903971.1 HMPREF0219_2494 pentapeptide repeats domain protein 31782 32663 -1
CDS - ZP_06903972.1 HMPREF0219_2495 alkylphosphonate uptake protein 33220 33564 -1
CDS cysA2 ZP_06903973.1 HMPREF0219_2496 sulfate/thiosulfate ABC superfamily ATP binding cassette transporter, ABC protein 33753 34370 -1
CDS - ZP_06903974.1 HMPREF0219_2497 bacteriocin ABC superfamily ATP binding cassette transporter, permease protein 34375 36543 -1
CDS - ZP_06903975.1 HMPREF0219_2498 probable signaling protein 36886 39393 -1
CDS - ZP_06903976.1 HMPREF0219_2499 fhu operon transcription regulator 40172 41053 -1
CDS - ZP_06903977.1 HMPREF0219_2500 possible aminoacylase 41235 42425 1
CDS - ZP_06903978.1 HMPREF0219_2501 major facilitator family transporter 42427 43704 1
CDS kdgA ZP_06903979.1 HMPREF0219_2502 possible 4-hydroxy-2-oxoglutarate aldolase 43890 44522 -1
CDS dapA1 ZP_06903980.1 HMPREF0219_2503 possible dihydrodipicolinate synthase 44651 45568 -1
CDS - ZP_06903981.1 HMPREF0219_2504 probable sugar-phosphate isomerase 45540 46139 -1
CDS - ZP_06903982.1 HMPREF0219_2505 PTS family porter component IIC 46196 47467 -1
CDS - ZP_06903983.1 HMPREF0219_2506 probable PTS system, IIB component 47494 47781 -1
CDS - ZP_06903984.1 HMPREF0219_2507 probable transcription antiterminator 47796 49877 -1
CDS entB ZP_06903985.1 HMPREF0219_2508 isochorismatase family hydrolase 50366 50887 -1
CDS - ZP_06903986.1 HMPREF0219_2509 hypothetical protein 51012 51131 -1
CDS - ZP_06903987.1 HMPREF0219_2510 hypothetical protein 51513 52367 -1
CDS - ZP_06903988.1 HMPREF0219_2511 hypothetical protein 52399 52911 -1
CDS - ZP_06903989.1 HMPREF0219_2512 hypothetical protein 52904 53128 -1
CDS - ZP_06903990.1 HMPREF0219_2513 hypothetical protein 53181 54134 -1
CDS - ZP_06903991.1 HMPREF0219_2514 hypothetical protein 54162 55550 -1
CDS - ZP_06903992.1 HMPREF0219_2515 LysR family transcriptional regulator 55823 56704 1
CDS - ZP_06903993.1 HMPREF0219_2516 PfkB family carbohydrate kinase 56892 57884 -1
CDS - ZP_06903994.1 HMPREF0219_2517 4-hydroxy-2-oxoglutarate aldolase 57889 58644 -1
CDS - ZP_06903995.1 HMPREF0219_2518 L-seryl-tRNA(Sec) selenium transferase 58694 59803 -1
CDS - ZP_06903996.1 HMPREF0219_2519 metal-dependent hydrolase 59821 60954 -1
CDS - ZP_06903997.1 HMPREF0219_2520 outer surface protein 60956 62050 -1
CDS - ZP_06903998.1 HMPREF0219_2521 PTS family porter component IIC 62188 63489 -1
CDS - ZP_06903999.1 HMPREF0219_2522 GntR family transcriptional regulator 63710 64411 -1
CDS - ZP_06904000.1 HMPREF0219_2523 PTS family oligomeric beta-glucoside porter component IIA 64623 64940 -1
CDS licB3 ZP_06904001.1 HMPREF0219_2524 PTS family lichenan porter component IIB 64988 65299 -1
CDS - ZP_06904002.1 HMPREF0219_2525 alpha/beta knot family protein 65448 65927 -1
CDS - ZP_06904003.1 HMPREF0219_2526 probable signaling protein 65995 68097 -1
CDS - ZP_06904004.1 HMPREF0219_2527 beta-lactamase superfamily I metal-dependent hydrolase 68110 68907 -1
CDS pepN ZP_06904005.1 HMPREF0219_2528 aminopeptidase N 68992 70455 -1
CDS - ZP_06904006.1 HMPREF0219_2529 hypothetical protein 70580 71638 1
CDS dnaC ZP_06904007.1 HMPREF0219_2530 DNA replication protein 71647 72639 1
tRNA - - HMPREF0219_t0018 tRNA-Thr 73021 73095 -1
tRNA - - HMPREF0219_t0019 tRNA-Val 73129 73204 -1
tRNA - - HMPREF0219_t0020 tRNA-Glu 73209 73283 -1
tRNA - - HMPREF0219_t0021 tRNA-Lys 73290 73365 -1
CDS purA ZP_06904008.1 HMPREF0219_2531 adenylosuccinate synthase 73696 74985 -1
CDS - ZP_06904009.1 HMPREF0219_2532 hypothetical protein 75067 75375 -1
CDS dnaB ZP_06904010.1 HMPREF0219_2533 replicative DNA helicase DnaB 75580 76908 -1
CDS rplI ZP_06904011.1 HMPREF0219_2534 50S ribosomal protein L9 76927 77376 -1
CDS - ZP_06904012.1 HMPREF0219_2535 DHH family protein 77377 79371 -1
CDS - ZP_06904013.1 HMPREF0219_2536 brp/Blh family beta-carotene 15,15'-monooxygenase 79382 80338 -1
CDS - ZP_06904014.1 HMPREF0219_2537 hypothetical protein 80346 80666 -1
CDS rpsR ZP_06904015.1 HMPREF0219_2538 30S ribosomal protein S18 80809 81036 -1
CDS ssb2 ZP_06904016.1 HMPREF0219_2539 single-strand binding protein 81055 81489 -1
CDS rpsF ZP_06904017.1 HMPREF0219_2540 30S ribosomal protein S6 81526 81804 -1
CDS - ZP_06904018.1 HMPREF0219_2541 aminotransferase 82018 83214 -1
CDS - ZP_06904019.1 HMPREF0219_2542 protein of hypothetical function DUF951 83317 83502 -1
CDS - ZP_06904020.1 HMPREF0219_2543 hypothetical protein 83517 83780 -1
CDS yedF ZP_06904021.1 HMPREF0219_2544 selenium metabolism protein YedF 83853 84485 -1
CDS - ZP_06904022.1 HMPREF0219_2545 possible transcriptional regulator 84560 85423 -1