• Summary page

Sequences

• contig00005, whole genome shotgun sequence
• contig00006, whole genome shotgun sequence
• contig00007, whole genome shotgun sequence
• contig00008, whole genome shotgun sequence
• contig00009, whole genome shotgun sequence
• contig00010, whole genome shotgun sequence
• contig00011, whole genome shotgun sequence
• contig00012, whole genome shotgun sequence
• contig00013, whole genome shotgun sequence
• contig00014, whole genome shotgun sequence
• contig00015, whole genome shotgun sequence
• contig00016, whole genome shotgun sequence
• contig00017, whole genome shotgun sequence
• contig00018, whole genome shotgun sequence
• contig00019, whole genome shotgun sequence
• contig00020, whole genome shotgun sequence
• contig00021, whole genome shotgun sequence
• contig00022, whole genome shotgun sequence
• contig00023, whole genome shotgun sequence
• contig00024, whole genome shotgun sequence
• contig00025, whole genome shotgun sequence
• contig00026, whole genome shotgun sequence
• contig00027, whole genome shotgun sequence
• contig00028, whole genome shotgun sequence
• contig00030, whole genome shotgun sequence
• contig00031, whole genome shotgun sequence
• contig00032, whole genome shotgun sequence
• contig00033, whole genome shotgun sequence
• contig00034, whole genome shotgun sequence
• contig00035, whole genome shotgun sequence
• contig00036, whole genome shotgun sequence
• contig00037, whole genome shotgun sequence
• contig00038, whole genome shotgun sequence
• contig00039, whole genome shotgun sequence
• contig00040, whole genome shotgun sequence
• contig00041, whole genome shotgun sequence
• contig00042, whole genome shotgun sequence
• contig00043, whole genome shotgun sequence
• contig00044, whole genome shotgun sequence
• contig00045, whole genome shotgun sequence
• contig00046, whole genome shotgun sequence
• contig00048, whole genome shotgun sequence
• contig00049, whole genome shotgun sequence
• contig00052, whole genome shotgun sequence
• contig00053, whole genome shotgun sequence
• contig00058, whole genome shotgun sequence
• contig00075, whole genome shotgun sequence
• contig00084, whole genome shotgun sequence
• contig00159, whole genome shotgun sequence
• contig00166, whole genome shotgun sequence
• contig00207, whole genome shotgun sequence
• contig00208, whole genome shotgun sequence
• contig00209, whole genome shotgun sequence
• contig00210, whole genome shotgun sequence
• contig00211, whole genome shotgun sequence
• contig00212, whole genome shotgun sequence
• contig00213, whole genome shotgun sequence
• contig00214, whole genome shotgun sequence
• contig00215, whole genome shotgun sequence
• contig00216, whole genome shotgun sequence
• contig00217, whole genome shotgun sequence
• contig00218, whole genome shotgun sequence
• contig00219, whole genome shotgun sequence
• contig00220, whole genome shotgun sequence
• contig00221, whole genome shotgun sequence
• contig00224, whole genome shotgun sequence
• contig00227, whole genome shotgun sequence
• contig00228, whole genome shotgun sequence
• contig00229, whole genome shotgun sequence
• contig00230, whole genome shotgun sequence
• contig00231, whole genome shotgun sequence
• contig00232, whole genome shotgun sequence
• contig00233, whole genome shotgun sequence
• contig00237, whole genome shotgun sequence
• contig00244, whole genome shotgun sequence
• contig00245, whole genome shotgun sequence
• contig00246, whole genome shotgun sequence
• contig00252, whole genome shotgun sequence
• contig00253, whole genome shotgun sequence
• contig00254, whole genome shotgun sequence
• contig00255, whole genome shotgun sequence
• contig00256, whole genome shotgun sequence
• contig00257, whole genome shotgun sequence
• contig00258, whole genome shotgun sequence
• contig00259, whole genome shotgun sequence
• contig00260, whole genome shotgun sequence
• contig00261, whole genome shotgun sequence
• contig00262, whole genome shotgun sequence
• contig00263, whole genome shotgun sequence
• contig00264, whole genome shotgun sequence
• contig00265, whole genome shotgun sequence
• contig00266, whole genome shotgun sequence
• contig00267, whole genome shotgun sequence
• contig00270, whole genome shotgun sequence
• contig00272, whole genome shotgun sequence
• contig00273, whole genome shotgun sequence
• contig00275, whole genome shotgun sequence
• contig00276, whole genome shotgun sequence
• contig00278, whole genome shotgun sequence
• contig00281, whole genome shotgun sequence

Taxonomy

cellular organisms
» Bacteria
» Firmicutes
» Clostridia
» Clostridiales
» Clostridiaceae
» Clostridium
» Clostridium difficile

Clostridium difficile NAP07

ycsG - branched chain amino acid:cation symporter family transporter

Analysis Tools

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve ycsG nucleotide sequence in FASTA format

Retrieve ycsG protein sequence in FASTA format

Retrieve HMPREF0219_2752 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF0219_2752 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile )

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Annotation

Product:

branched chain amino acid:cation symporter family transporter

GenBank ID: ZP_06904229.1

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