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Clostridium difficile NAP07 contig00231, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06904284.1 HMPREF0219_2807 GGDEF domain protein 161 2497 -1
CDS ymdA ZP_06904285.1 HMPREF0219_2808 2',3'-cyclic-nucleotide 2'-phosphodiesterase 2807 4369 -1
CDS recA ZP_06904286.1 HMPREF0219_2809 recombination protein A 4524 5570 -1
CDS pgsA ZP_06904287.1 HMPREF0219_2810 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 5837 6388 -1
CDS yliG ZP_06904288.1 HMPREF0219_2811 MiaB family RNA modification enzyme 6366 7700 -1
CDS selU ZP_06904289.1 HMPREF0219_2812 tRNA 2-selenouridine synthase 7694 8752 -1
CDS ftsK ZP_06904290.1 HMPREF0219_2813 DNA translocase FtsK 8755 11163 -1
CDS clpP3 ZP_06904291.1 HMPREF0219_2814 ATP-dependent Clp protease proteolytic subunit 11286 12044 -1
CDS dapG ZP_06904292.1 HMPREF0219_2815 possible aspartate kinase 12134 13357 -1
CDS - ZP_06904293.1 HMPREF0219_2816 sporulation protein YlmC/YmxH 13367 13612 -1
CDS - ZP_06904294.1 HMPREF0219_2817 M16 family peptidase 13647 14894 -1
CDS - ZP_06904295.1 HMPREF0219_2818 probable polysaccharide deacetylase 15052 15795 -1
CDS - ZP_06904296.1 HMPREF0219_2819 hypothetical protein 15752 15913 1
CDS pnp ZP_06904297.1 HMPREF0219_2820 polyribonucleotide nucleotidyltransferase 15918 18029 -1
CDS - ZP_06904298.1 HMPREF0219_2821 DegV family protein 18154 18999 -1
CDS rpsO ZP_06904299.1 HMPREF0219_2822 30S ribosomal protein S15 19239 19496 -1
CDS ribF ZP_06904300.1 HMPREF0219_2823 possible FAD synthetase 19600 20529 -1
CDS truB ZP_06904301.1 HMPREF0219_2824 tRNA pseudouridine synthase B 20659 21564 -1
CDS - ZP_06904302.1 HMPREF0219_2825 hypothetical protein 21577 22560 -1
CDS rbfA ZP_06904303.1 HMPREF0219_2826 ribosome-binding factor A 22541 22921 -1
CDS infB ZP_06904304.1 HMPREF0219_2827 translation initiation factor IF2 22964 24904 -1
CDS rplL ZP_06904305.1 HMPREF0219_2828 ribosomal protein L7/L12 24926 25237 -1
CDS ylxR ZP_06904306.1 HMPREF0219_2829 cytosolic protein YlxR 25227 25508 -1
CDS nusA ZP_06904307.1 HMPREF0219_2830 transcription termination factor NusA 25515 26669 -1
CDS - ZP_06904308.1 HMPREF0219_2831 protein of hypothetical function DUF150 26699 27160 -1
CDS polC ZP_06904309.1 HMPREF0219_2832 DNA polymerase III PolC 27364 31662 -1
CDS - ZP_06904310.1 HMPREF0219_2833 probable mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 31875 33695 -1
CDS - ZP_06904311.1 HMPREF0219_2834 NAD-dependent deacetylase 33909 34646 1
CDS - ZP_06904312.1 HMPREF0219_2835 nucleotide pyrophosphohydrolase domain protein 34742 35086 1
CDS - ZP_06904313.1 HMPREF0219_2836 hypothetical protein 35261 35401 -1
CDS - ZP_06904314.1 HMPREF0219_2837 brp/Blh family beta-carotene 15,15'-monooxygenase 35670 36338 1
CDS pepA ZP_06904315.1 HMPREF0219_2838 leucyl aminopeptidase 36430 37881 -1
CDS - ZP_06904316.1 HMPREF0219_2839 MarR family transcriptional regulator 37897 38337 -1
CDS ytfJ ZP_06904317.1 HMPREF0219_2840 sporulation protein YtfJ 38575 39003 -1
CDS - ZP_06904318.1 HMPREF0219_2841 hypothetical protein 38957 39586 -1
CDS scpB ZP_06904319.1 HMPREF0219_2842 segregation and condensation protein B 39745 40284 -1
CDS - ZP_06904320.1 HMPREF0219_2843 ScpA/B protein 40286 41005 -1
CDS spoIVFB ZP_06904321.1 HMPREF0219_2844 Zn-dependent protease 41035 41631 -1
CDS - ZP_06904322.1 HMPREF0219_2845 AraC/XylS family transcriptional regulator 41929 42765 1
CDS - ZP_06904323.1 HMPREF0219_2846 hypothetical protein 42786 43208 1
CDS - ZP_06904324.1 HMPREF0219_2847 serine-type D-Ala-D-Ala carboxypeptidase 43418 44581 -1
CDS - ZP_06904325.1 HMPREF0219_2848 probable small acid-soluble spore protein 44635 44835 -1
CDS - ZP_06904326.1 HMPREF0219_2849 metallo-beta-lactamase 45041 46762 -1
CDS - ZP_06904327.1 HMPREF0219_2850 probable membrane-bound metal-dependent hydrolase 46934 47671 1
CDS fur ZP_06904328.1 HMPREF0219_2851 ferric uptake regulation protein 47788 48246 -1
CDS - ZP_06904329.1 HMPREF0219_2852 hypothetical protein 48528 48869 -1
CDS - ZP_06904330.1 HMPREF0219_2853 YqgF family crossover junction endodeoxyribonuclease, YrrK 48893 49318 -1
CDS - ZP_06904331.1 HMPREF0219_2854 hypothetical protein 49470 51641 -1
CDS - ZP_06904332.1 HMPREF0219_2855 protein of hypothetical function DUF965 51651 51908 -1
CDS alaS ZP_06904333.1 HMPREF0219_2856 alanine--tRNA ligase 51933 54572 -1
CDS trmU ZP_06904334.1 HMPREF0219_2857 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 55021 56106 -1
CDS nifU ZP_06904335.1 HMPREF0219_2858 FeS cluster assembly scaffold protein NifU 56384 56824 -1
CDS iscS2 ZP_06904336.1 HMPREF0219_2859 cysteine desulfurase 56878 58080 -1
CDS - ZP_06904337.1 HMPREF0219_2860 Rrf2 family transcriptional regulator 58089 58535 -1
CDS - ZP_06904338.1 HMPREF0219_2861 GNAT family acetyltransferase 58644 59414 -1
CDS - ZP_06904339.1 HMPREF0219_2862 AAA family ATPase 59445 60710 -1
CDS codY ZP_06904340.1 HMPREF0219_2863 GTP-sensing transcriptional pleiotropic repressor CodY 60826 61611 -1
CDS topA ZP_06904341.1 HMPREF0219_2864 DNA topoisomerase TopA 61776 63881 -1
CDS - ZP_06904342.1 HMPREF0219_2865 SMF family DNA processing protein 63896 64996 -1
CDS - ZP_06904343.1 HMPREF0219_2866 Mg chelatase-like protein 65015 66616 -1
CDS - ZP_06904344.1 HMPREF0219_2867 endonuclease 66647 66991 -1
CDS - ZP_06904345.1 HMPREF0219_2868 two component sensor histidine kinase 67175 68338 1
CDS - ZP_06904346.1 HMPREF0219_2869 DNA-binding response regulator 68322 68978 1
CDS sagG ZP_06904347.1 HMPREF0219_2870 ABC superfamily ATP binding cassette transporter, ABC protein 69107 70042 1
CDS - ZP_06904348.1 HMPREF0219_2871 ABC superfamily ATP binding cassette transporter superfamily protein 70056 71156 1
CDS - ZP_06904349.1 HMPREF0219_2872 ABC superfamily ATP binding cassette transporter, permease protein 71138 72220 1
CDS - ZP_06904350.1 HMPREF0219_2873 probable regulatory protein 72464 72961 1
CDS - ZP_06904351.1 HMPREF0219_2874 hypothetical protein 73134 73382 -1
CDS - ZP_06904352.1 HMPREF0219_2875 possible (S)-2-hydroxy-acid oxidase 73449 74465 -1
CDS rnhB ZP_06904353.1 HMPREF0219_2876 ribonuclease H 74523 75290 -1
CDS - ZP_06904354.1 HMPREF0219_2877 ribonucleoside-diphosphate reductase 75358 77547 -1
CDS brnQ ZP_06904355.1 HMPREF0219_2878 LIVCS family branched chain amino acid:cation symporter 78126 79418 -1
CDS brnQ2 ZP_06904356.1 HMPREF0219_2879 LIVCS family branched chain amino acid:cation symporter 80506 81798 -1
CDS ylqF ZP_06904357.1 HMPREF0219_2880 ribosome biogenesis GTP-binding protein YlqF 82187 83083 -1
CDS rplS ZP_06904358.1 HMPREF0219_2881 50S ribosomal protein L19 83405 83755 -1
CDS trmD ZP_06904359.1 HMPREF0219_2882 tRNA (guanine-N(1)-)-methyltransferase 83929 84624 -1
CDS rimM ZP_06904360.1 HMPREF0219_2883 16S rRNA processing protein RimM 84633 85148 -1
CDS - ZP_06904361.1 HMPREF0219_2884 RNA binding protein 85256 85492 -1
CDS rpsP ZP_06904362.1 HMPREF0219_2885 30S ribosomal protein S16 85548 85820 -1
CDS ffh ZP_06904363.1 HMPREF0219_2886 signal recognition particle protein 85858 87210 -1
CDS ylxM ZP_06904364.1 HMPREF0219_2887 signal recognition particle associated protein 87207 87575 -1
CDS ftsY ZP_06904365.1 HMPREF0219_2888 cell division protein FtsY 87678 88949 -1
CDS - ZP_06904366.1 HMPREF0219_2889 chromosome segregation protein Smc 88976 92530 -1
CDS - ZP_06904367.1 HMPREF0219_2890 oxygen-independent coproporphyrinogen III oxidase 92558 93628 -1
CDS rnc2 ZP_06904368.1 HMPREF0219_2891 ribonuclease III 93682 94392 -1
CDS - ZP_06904369.1 HMPREF0219_2892 hypothetical protein 94554 95009 -1
CDS efp ZP_06904370.1 HMPREF0219_2893 elongation factor P 95101 95673 -1
CDS - ZP_06904371.1 HMPREF0219_2894 hypothetical protein 95971 96501 -1
CDS - ZP_06904372.1 HMPREF0219_2895 hypothetical protein 96491 96937 -1
CDS - ZP_06904373.1 HMPREF0219_2896 hypothetical protein 96930 97649 -1
CDS - ZP_06904374.1 HMPREF0219_2897 hypothetical protein 97633 97857 -1
CDS sigE2 ZP_06904375.1 HMPREF0219_2898 RNA polymerase sigma-E factor 98562 98978 1
CDS - ZP_06904376.1 HMPREF0219_2899 hypothetical protein 99268 99474 1
CDS - ZP_06904377.1 HMPREF0219_2900 probable phage-related DNA-directed RNA polymerase polypeptide 99471 99665 1
CDS - ZP_06904378.1 HMPREF0219_2901 VanZ like family protein 99774 100283 -1
CDS - ZP_06904379.1 HMPREF0219_2902 conjugative transposon protein 100999 101166 1
CDS - ZP_06904380.1 HMPREF0219_2903 MarR family transcriptional regulator 101307 101744 1
CDS - ZP_06904381.1 HMPREF0219_2904 hypothetical protein 101800 102459 1
CDS - ZP_06904382.1 HMPREF0219_2905 hypothetical protein 102917 103105 1
CDS - ZP_06904383.1 HMPREF0219_2906 hypothetical protein 103270 103521 -1