xBASE Logo
About | Contact | Home

Clostridium difficile NAP07 contig00260, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06904739.1 HMPREF0219_3262 hypothetical protein 62 406 -1
CDS - ZP_06904740.1 HMPREF0219_3263 hypothetical protein 446 787 -1
CDS - ZP_06904741.1 HMPREF0219_3264 hypothetical protein 1152 1394 -1
CDS - ZP_06904742.1 HMPREF0219_3265 hypothetical protein 1643 2077 1
CDS - ZP_06904743.1 HMPREF0219_3266 hypothetical protein 2103 2291 1
CDS - ZP_06904744.1 HMPREF0219_3267 hypothetical protein 2561 2695 -1
CDS - ZP_06904745.1 HMPREF0219_3268 hypothetical protein 2980 3102 -1
CDS - ZP_06904746.1 HMPREF0219_3269 hypothetical protein 3152 3436 -1
CDS - ZP_06904747.1 HMPREF0219_3270 hypothetical protein 3444 4157 -1
CDS - ZP_06904748.1 HMPREF0219_3271 RNA polymerase sigma-70 factor 4141 4683 -1
CDS - ZP_06904749.1 HMPREF0219_3272 hypothetical protein 4930 5112 -1
CDS - ZP_06904750.1 HMPREF0219_3273 hypothetical protein 5140 5751 -1
CDS - ZP_06904751.1 HMPREF0219_3274 probable nitroreductase 5818 6081 1
CDS sigV ZP_06904752.1 HMPREF0219_3275 RNA polymerase sigma-70 factor family protein 7251 7811 1
CDS - ZP_06904753.1 HMPREF0219_3276 hypothetical protein 7813 8847 1
CDS - ZP_06904754.1 HMPREF0219_3277 hypothetical protein 8972 9103 -1
CDS - ZP_06904755.1 HMPREF0219_3278 hypothetical protein 9208 9621 1
CDS - ZP_06904756.1 HMPREF0219_3279 hypothetical protein 10054 11085 -1
CDS - ZP_06904757.1 HMPREF0219_3280 hypothetical protein 11236 11886 -1
CDS - ZP_06904758.1 HMPREF0219_3281 hypothetical protein 12079 12537 1
CDS - ZP_06904759.1 HMPREF0219_3282 hypothetical protein 12612 13034 1
CDS - ZP_06904760.1 HMPREF0219_3283 hypothetical protein 13064 13750 1
CDS - ZP_06904761.1 HMPREF0219_3284 peptidase S8 and S53 subtilisin kexin sedolisin 13898 14710 1
CDS - ZP_06904762.1 HMPREF0219_3285 hypothetical protein 14792 15040 1
CDS - ZP_06904763.1 HMPREF0219_3286 hypothetical protein 15292 15453 1
CDS tnpX ZP_06904764.1 HMPREF0219_3287 site-specific recombinase 15655 16011 -1
CDS - ZP_06904765.1 HMPREF0219_3288 AraC family transcriptional regulator 16127 16357 -1
CDS - ZP_06904766.1 HMPREF0219_3289 superfamily II DNA and RNA helicase 16530 18743 -1
CDS - ZP_06904767.1 HMPREF0219_3290 hypothetical protein 19239 19805 -1
CDS - ZP_06904768.1 HMPREF0219_3291 ABC superfamily ATP binding cassette transporter, membrane protein 20207 21259 -1
CDS - ZP_06904769.1 HMPREF0219_3292 ABC superfamily ATP binding cassette transporter, membrane protein 21259 21999 -1
CDS - ZP_06904770.1 HMPREF0219_3293 ABC superfamily ATP binding cassette transporter, ABC protein 22004 22762 -1
CDS - ZP_06904771.1 HMPREF0219_3294 PadR family transcriptional regulator 22864 23586 -1
CDS - ZP_06904772.1 HMPREF0219_3295 metallo-beta-lactamase superfamily hydrolase 23687 24292 -1
CDS - ZP_06904773.1 HMPREF0219_3296 TetR family transcriptional regulator 24472 25110 1
CDS - ZP_06904774.1 HMPREF0219_3297 response regulator 25226 25888 1
CDS - ZP_06904775.1 HMPREF0219_3298 two component sensor histidine kinase 25888 27069 1
CDS - ZP_06904776.1 HMPREF0219_3299 ABC superfamily ATP binding cassette transporter, permease protein 27246 29906 -1
CDS lolD ZP_06904777.1 HMPREF0219_3300 ABC superfamily ATP binding cassette transporter, ABC protein 29903 30586 -1
CDS ybxI ZP_06904778.1 HMPREF0219_3301 possible beta-lactamase 30935 31867 -1
CDS - ZP_06904779.1 HMPREF0219_3302 possible DNA helicase 32407 34521 -1
CDS - ZP_06904780.1 HMPREF0219_3303 AraC family transcription regulator 34768 35652 -1
CDS mutT ZP_06904781.1 HMPREF0219_3304 NUDIX family hydrolase 35819 36433 -1
CDS - ZP_06904782.1 HMPREF0219_3305 hypothetical protein 36501 36863 -1
CDS - ZP_06904783.1 HMPREF0219_3306 hypothetical protein 37083 37547 -1
CDS nhaC ZP_06904784.1 HMPREF0219_3307 Na+/H+ antiporter NhaC 37857 39278 -1
CDS - ZP_06904785.1 HMPREF0219_3308 amino acid racemase 39308 40372 -1
CDS - ZP_06904786.1 HMPREF0219_3309 methylaspartate mutase 40357 41766 -1
CDS sbm ZP_06904787.1 HMPREF0219_3310 methylmalonyl-CoA mutase domain/subunit 41766 43970 -1
CDS - ZP_06904788.1 HMPREF0219_3311 D-ornithine aminomutase S component 43964 44338 -1
CDS thrC ZP_06904789.1 HMPREF0219_3312 threonine synthase 44416 45846 -1
CDS - ZP_06904790.1 HMPREF0219_3313 hypothetical protein 45839 46147 -1
CDS - ZP_06904791.1 HMPREF0219_3314 probable oxidoreductase 46245 47312 -1
CDS rocR ZP_06904792.1 HMPREF0219_3315 arginine utilization regulatory protein RocR 47572 48945 -1
CDS - ZP_06904793.1 HMPREF0219_3316 hypothetical protein 49479 51437 -1
CDS metX ZP_06904794.1 HMPREF0219_3317 homoserine O-acetyltransferase 52119 52397 -1
CDS - ZP_06904795.1 HMPREF0219_3318 AraC/XylS family transcriptional regulator 52498 52914 -1
CDS - ZP_06904796.1 HMPREF0219_3319 AraC family transcriptional regulator 52895 53407 -1
CDS - ZP_06904797.1 HMPREF0219_3320 AraC family transcriptional regulator 53491 53958 -1
CDS rhaU ZP_06904798.1 HMPREF0219_3321 L-rhamnose 1-epimerase 54144 54464 1
CDS - ZP_06904799.1 HMPREF0219_3322 hypothetical protein 55199 55351 1
CDS - ZP_06904800.1 HMPREF0219_3323 flavin reductase 55402 55977 1
CDS - ZP_06904801.1 HMPREF0219_3324 hypothetical protein 56647 56817 -1
CDS - ZP_06904802.1 HMPREF0219_3325 P-type 2 magnesium transport ATPase 56827 59592 -1
CDS - ZP_06904803.1 HMPREF0219_3326 hypothetical protein 59757 60068 -1
CDS - ZP_06904804.1 HMPREF0219_3327 hypothetical protein 60084 60314 -1
CDS - ZP_06904805.1 HMPREF0219_3328 probable transcriptional regulator 60452 60958 -1
CDS - ZP_06904806.1 HMPREF0219_3329 P-type 2 magnesium transport ATPase 60971 63634 -1
CDS - ZP_06904807.1 HMPREF0219_3330 hypothetical protein 63733 63942 -1
CDS - ZP_06904808.1 HMPREF0219_3331 possible collagen-binding surface protein 64759 64869 -1
CDS - ZP_06904809.1 HMPREF0219_3332 two component sensor histidine kinase 65577 66914 1
CDS - ZP_06904810.1 HMPREF0219_3333 accessory protein regulator B 66957 67544 1
CDS - ZP_06904811.1 HMPREF0219_3334 hypothetical protein 67557 67691 1
CDS - ZP_06904812.1 HMPREF0219_3335 ISCpe5 transposase 68070 68333 -1
CDS - ZP_06904813.1 HMPREF0219_3336 ISCpe5 transposase 68314 68964 -1
CDS - ZP_06904814.1 HMPREF0219_3337 ISCpe5 transposase 68989 69465 -1
CDS - ZP_06904815.1 HMPREF0219_3338 probable restriction endonuclease 69898 70467 1
CDS - ZP_06904816.1 HMPREF0219_3339 cell surface protein 70744 71364 -1
CDS rumA ZP_06904817.1 HMPREF0219_3340 23S rRNA (uracil-5-)-methyltransferase 71613 72974 -1
CDS rsuA ZP_06904818.1 HMPREF0219_3341 ribosomal small subunit pseudouridine synthase A 73001 73723 -1
CDS - ZP_06904819.1 HMPREF0219_3342 hypothetical protein 73723 74052 -1
CDS fbaB ZP_06904820.1 HMPREF0219_3343 fructose-bisphosphate aldolase 74382 75308 1
CDS - ZP_06904821.1 HMPREF0219_3344 sigma-54-dependent transcriptional regulator 75923 77554 -1
CDS etfA ZP_06904822.1 HMPREF0219_3345 electron transfer flavoprotein alpha subunit 78036 79073 -1
CDS etfB ZP_06904823.1 HMPREF0219_3346 electron transfer flavoprotein beta subunit 79092 79877 -1
CDS bcd ZP_06904824.1 HMPREF0219_3347 butyryl-CoA dehydrogenase 79910 81043 -1
CDS fldC ZP_06904825.1 HMPREF0219_3348 R-phenyllactate dehydratase 81091 82218 -1
CDS fldB ZP_06904826.1 HMPREF0219_3349 R-phenyllactate dehydratase 82218 83450 -1
CDS fldI ZP_06904827.1 HMPREF0219_3350 R-phenyllactate dehydratase activator 83459 84268 -1
CDS hadA ZP_06904828.1 HMPREF0219_3351 3-methyl-2-oxobutanoate dehydrogenase 84298 85497 -1
CDS ldhD ZP_06904829.1 HMPREF0219_3352 D-lactate dehydrogenase 86191 87189 1
CDS - ZP_06904830.1 HMPREF0219_3353 hypothetical protein 87436 87579 1
CDS - ZP_06904831.1 HMPREF0219_3354 hypothetical protein 87563 88090 1
CDS - ZP_06904832.1 HMPREF0219_3355 radical SAM domain protein 88117 88713 1
CDS - ZP_06904833.1 HMPREF0219_3356 possible asparagine synthase (glutamine-hydrolyzing) 88778 90361 -1
CDS bglG ZP_06904834.1 HMPREF0219_3357 transcription antiterminator 90928 91764 -1
CDS bglH ZP_06904835.1 HMPREF0219_3358 beta-glucosidase 91788 93254 -1
CDS bglP ZP_06904836.1 HMPREF0219_3359 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component 93257 95170 -1
CDS - ZP_06904837.1 HMPREF0219_3360 hypothetical protein 95366 96229 -1
CDS - ZP_06904838.1 HMPREF0219_3361 hypothetical protein 96284 97216 -1