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Clostridium difficile NAP08 contig00002, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS cbiK ZP_06890761.1 HMPREF0220_0006 cobalt ABC superfamily ATP binding cassette transporter, binding protein 1 1041 -1
CDS cbiK EFH08869.1 HMPREF0220_0006 - 1 1041 -1
CDS cobK ZP_06890762.1 HMPREF0220_0007 precorrin-6x reductase 1060 1812 -1
CDS cobK EFH08870.1 HMPREF0220_0007 - 1060 1812 -1
CDS cobJ ZP_06890763.1 HMPREF0220_0008 precorrin-3B C(17)-methyltransferase 1809 2534 -1
CDS cobJ EFH08871.1 HMPREF0220_0008 - 1809 2534 -1
CDS - ZP_06890764.1 HMPREF0220_0009 CbiG protein 2531 3652 -1
CDS - EFH08872.1 HMPREF0220_0009 - 2531 3652 -1
CDS cobM ZP_06890765.1 HMPREF0220_0010 precorrin-4 C(11)-methyltransferase 3636 4394 -1
CDS cobM EFH08873.1 HMPREF0220_0010 - 3636 4394 -1
CDS cobL ZP_06890766.1 HMPREF0220_0011 precorrin-6y c5,15-methyltransferase 4381 4956 -1
CDS cobL EFH08874.1 HMPREF0220_0011 - 4381 4956 -1
CDS cbiE ZP_06890767.1 HMPREF0220_0012 precorrin-6y C5,15-methyltransferase 4946 5554 -1
CDS cbiE EFH08875.1 HMPREF0220_0012 - 4946 5554 -1
CDS cbiD ZP_06890768.1 HMPREF0220_0013 cobalamin biosynthesis protein CbiD 5551 6777 -1
CDS cbiD EFH08876.1 HMPREF0220_0013 - 5551 6777 -1
CDS cobH ZP_06890769.1 HMPREF0220_0014 possible precorrin-8X methylmutase 6786 7418 -1
CDS cobH EFH08877.1 HMPREF0220_0014 - 6786 7418 -1
CDS - ZP_06890770.1 HMPREF0220_0015 probable cobalamin biosynthesis kinase 7406 8302 -1
CDS - EFH08878.1 HMPREF0220_0015 - 7406 8302 -1
CDS cobD ZP_06890771.1 HMPREF0220_0016 threonine-phosphate decarboxylase 8295 9359 -1
CDS cobD EFH08879.1 HMPREF0220_0016 - 8295 9359 -1
CDS cobD2 ZP_06890772.1 HMPREF0220_0017 cobalamin biosynthesis protein CobD 9391 10362 -1
CDS cobD2 EFH08880.1 HMPREF0220_0017 - 9391 10362 -1
CDS cobB ZP_06890773.1 HMPREF0220_0018 cobyrinic Acid a,c-diamide synthase 10363 11739 -1
CDS cobB EFH08881.1 HMPREF0220_0018 - 10363 11739 -1
CDS cobQ ZP_06890774.1 HMPREF0220_0019 cobyric acid synthase CobQ 11778 13292 -1
CDS cobQ EFH08882.1 HMPREF0220_0019 - 11778 13292 -1
CDS - ZP_06890775.1 HMPREF0220_0020 possible fructose-2,6-bisphosphate 2-phosphatase 13653 14267 -1
CDS - EFH08883.1 HMPREF0220_0020 - 13653 14267 -1
CDS cobS ZP_06890776.1 HMPREF0220_0021 cobalamin 5'-phosphate synthase 14287 15060 -1
CDS cobS EFH08884.1 HMPREF0220_0021 - 14287 15060 -1
CDS cobP ZP_06890777.1 HMPREF0220_0022 adenosylcobinamide-phosphate guanylyltransferase 15070 15684 -1
CDS cobP EFH08885.1 HMPREF0220_0022 - 15070 15684 -1
CDS cobT ZP_06890778.1 HMPREF0220_0023 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15662 16708 -1
CDS cobT EFH08886.1 HMPREF0220_0023 - 15662 16708 -1
CDS - ZP_06890779.1 HMPREF0220_0024 evolved beta-galactosidase beta-subunit 16928 17119 1
CDS - EFH08887.1 HMPREF0220_0024 - 16928 17119 1
CDS - ZP_06890780.1 HMPREF0220_0025 conserved hypothetical protein 17160 17294 -1
CDS - EFH08888.1 HMPREF0220_0025 - 17160 17294 -1
CDS lacX ZP_06890781.1 HMPREF0220_0026 aldose epimerase 17513 18385 1
CDS lacX EFH08889.1 HMPREF0220_0026 - 17513 18385 1
CDS patB2 ZP_06890782.1 HMPREF0220_0027 aminotransferase 18582 19769 -1
CDS patB2 EFH08890.1 HMPREF0220_0027 - 18582 19769 -1
CDS - ZP_06890783.1 HMPREF0220_0028 possible Xaa-Pro dipeptidase 19774 20844 -1
CDS - EFH08891.1 HMPREF0220_0028 - 19774 20844 -1
CDS - ZP_06890784.1 HMPREF0220_0029 PTS family oligomeric beta-glucoside porter component IIC 20854 22176 -1
CDS - EFH08892.1 HMPREF0220_0029 - 20854 22176 -1
CDS licB5 ZP_06890785.1 HMPREF0220_0030 PTS family lichenan porter component IIB 22208 22543 -1
CDS licB5 EFH08893.1 HMPREF0220_0030 - 22208 22543 -1
CDS - ZP_06890786.1 HMPREF0220_0031 lactose/cellobiose specific IIA subunit superfamily PTS system 22640 22945 -1
CDS - EFH08894.1 HMPREF0220_0031 - 22640 22945 -1
CDS celM ZP_06890787.1 HMPREF0220_0032 exoaminopeptidase 22960 24003 -1
CDS celM EFH08895.1 HMPREF0220_0032 - 22960 24003 -1
CDS - ZP_06890788.1 HMPREF0220_0033 probable transcription antiterminator 24006 25907 -1
CDS - EFH08896.1 HMPREF0220_0033 - 24006 25907 -1
CDS kbaY2 ZP_06890789.1 HMPREF0220_0034 tagatose-bisphosphate aldolase 26236 27087 -1
CDS kbaY2 EFH08897.1 HMPREF0220_0034 - 26236 27087 -1
CDS agaS ZP_06890790.1 HMPREF0220_0035 sugar isomerase protein AgaS 27136 28305 -1
CDS agaS EFH08898.1 HMPREF0220_0035 - 27136 28305 -1
CDS - ZP_06890791.1 HMPREF0220_0036 virulence factor MviM 28777 29694 1
CDS - EFH08899.1 HMPREF0220_0036 - 28777 29694 1
CDS lacC ZP_06890792.1 HMPREF0220_0037 possible tagatose-6-phosphate kinase 29823 30752 -1
CDS lacC EFH08900.1 HMPREF0220_0037 - 29823 30752 -1
CDS - ZP_06890793.1 HMPREF0220_0038 GntR family transcriptional regulator 31022 31747 1
CDS - EFH08901.1 HMPREF0220_0038 - 31022 31747 1
CDS manD ZP_06890794.1 HMPREF0220_0039 N-acetylglucosamine-6-phosphate deacetylase 31830 32984 1
CDS manD EFH08902.1 HMPREF0220_0039 - 31830 32984 1
CDS - ZP_06890795.1 HMPREF0220_0040 probable exported carboxy-terminal processing protease 33166 34323 -1
CDS - EFH08903.1 HMPREF0220_0040 - 33166 34323 -1
CDS fthC ZP_06890796.1 HMPREF0220_0041 5-formyltetrahydrofolate cyclo-ligase 34477 35046 1
CDS fthC EFH08904.1 HMPREF0220_0041 - 34477 35046 1
CDS - ZP_06890797.1 HMPREF0220_0042 conserved hypothetical protein 35228 35662 -1
CDS - EFH08905.1 HMPREF0220_0042 - 35228 35662 -1
CDS - ZP_06890798.1 HMPREF0220_0043 YkoY family integral membrane protein 35870 36964 -1
CDS - EFH08906.1 HMPREF0220_0043 - 35870 36964 -1
CDS tkt3 ZP_06890799.1 HMPREF0220_0044 transketolase 37386 38327 -1
CDS tkt3 EFH08907.1 HMPREF0220_0044 - 37386 38327 -1
CDS tkt4 ZP_06890800.1 HMPREF0220_0045 transketolase, thiamine disphosphate-binding subunit 38320 39147 -1
CDS tkt4 EFH08908.1 HMPREF0220_0045 - 38320 39147 -1
CDS - ZP_06890801.1 HMPREF0220_0046 PemK family growth inhibitor 39318 39701 -1
CDS - EFH08909.1 HMPREF0220_0046 - 39318 39701 -1
CDS - ZP_06890802.1 HMPREF0220_0047 CopG-family transcriptional regulator 39670 39957 -1
CDS - EFH08910.1 HMPREF0220_0047 - 39670 39957 -1
CDS alr ZP_06890803.1 HMPREF0220_0048 alanine racemase 39990 41147 -1
CDS alr EFH08911.1 HMPREF0220_0048 - 39990 41147 -1
CDS - ZP_06890804.1 HMPREF0220_0049 probable lipoprotein 41162 41752 -1
CDS - EFH08912.1 HMPREF0220_0049 - 41162 41752 -1
CDS - ZP_06890805.1 HMPREF0220_0050 CBS domain protein 41773 42234 -1
CDS - EFH08913.1 HMPREF0220_0050 - 41773 42234 -1
CDS acpS ZP_06890806.1 HMPREF0220_0051 holo-[acyl-carrier-protein] synthase 42249 42629 -1
CDS acpS EFH08914.1 HMPREF0220_0051 - 42249 42629 -1
CDS - ZP_06890807.1 HMPREF0220_0052 ATP synthase 43082 43342 -1
CDS - EFH08915.1 HMPREF0220_0052 - 43082 43342 -1
CDS atpD ZP_06890808.1 HMPREF0220_0053 ATP synthase F1 sector beta subunit 43345 44739 -1
CDS atpD EFH08916.1 HMPREF0220_0053 - 43345 44739 -1
CDS atpG ZP_06890809.1 HMPREF0220_0054 ATP synthase F1 sector gamma subunit 44752 45630 -1
CDS atpG EFH08917.1 HMPREF0220_0054 - 44752 45630 -1
CDS atpA2 ZP_06890810.1 HMPREF0220_0055 ATP synthase F1 sector alpha subunit 45658 47160 -1
CDS atpA2 EFH08918.1 HMPREF0220_0055 - 45658 47160 -1