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Clostridium difficile NAP08 contig00007, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS cbiM ZP_06890894.1 HMPREF0220_0139 cobalt ABC superfamily ATP binding cassette transporter, permease protein 301 1053 1
CDS cbiM EFH08734.1 HMPREF0220_0139 - 301 1053 1
CDS cbiN ZP_06890895.1 HMPREF0220_0140 cobalt transporter CbiN 1022 1327 1
CDS cbiN EFH08735.1 HMPREF0220_0140 - 1022 1327 1
CDS cbiQ ZP_06890896.1 HMPREF0220_0141 cobalt ABC superfamily ATP binding cassette transporter, membrane protein 1330 2028 1
CDS cbiQ EFH08736.1 HMPREF0220_0141 - 1330 2028 1
CDS - ZP_06890897.1 HMPREF0220_0142 ABC superfamily ATP binding cassette transporter, ABC protein 2018 2839 1
CDS - EFH08737.1 HMPREF0220_0142 - 2018 2839 1
CDS pcrA ZP_06890898.1 HMPREF0220_0143 ATP-dependent DNA helicase PcrA 3069 5357 1
CDS pcrA EFH08738.1 HMPREF0220_0143 - 3069 5357 1
CDS dnpEP ZP_06890899.1 HMPREF0220_0144 possible aspartyl aminopeptidase 5374 6672 1
CDS dnpEP EFH08739.1 HMPREF0220_0144 - 5374 6672 1
CDS - ZP_06890900.1 HMPREF0220_0145 patatin family phospholipase 6703 7455 1
CDS - EFH08740.1 HMPREF0220_0145 - 6703 7455 1
CDS ppiA ZP_06890901.1 HMPREF0220_0146 peptidyl-prolyl cis-trans isomerase 7520 8044 1
CDS ppiA EFH08741.1 HMPREF0220_0146 - 7520 8044 1
CDS ppaC ZP_06890902.1 HMPREF0220_0147 possible inorganic diphosphatase 8976 10574 -1
CDS ppaC EFH08742.1 HMPREF0220_0147 - 8976 10574 -1
CDS adhE2 ZP_06890903.1 HMPREF0220_0148 acetaldehyde dehydrogenase (acetylating) 11441 14083 1
CDS adhE2 EFH08743.1 HMPREF0220_0148 - 11441 14083 1
CDS - ZP_06890904.1 HMPREF0220_0149 conserved hypothetical protein 14436 14777 -1
CDS - EFH08744.1 HMPREF0220_0149 - 14436 14777 -1
CDS - ZP_06890905.1 HMPREF0220_0150 ABC superfamily ATP binding cassette transporter, ABC protein 14804 15475 -1
CDS - EFH08745.1 HMPREF0220_0150 - 14804 15475 -1
CDS - ZP_06890906.1 HMPREF0220_0151 ABC superfamily ATP binding cassette transporter, permease protein 15487 17994 -1
CDS - EFH08746.1 HMPREF0220_0151 - 15487 17994 -1
CDS - ZP_06890907.1 HMPREF0220_0152 conserved hypothetical protein 18369 23426 -1
CDS - EFH08747.1 HMPREF0220_0152 - 18369 23426 -1
CDS - ZP_06890908.1 HMPREF0220_0153 conserved hypothetical protein 23451 23870 -1
CDS - EFH08748.1 HMPREF0220_0153 - 23451 23870 -1
CDS - ZP_06890909.1 HMPREF0220_0154 conserved hypothetical protein 24104 24355 -1
CDS - EFH08749.1 HMPREF0220_0154 - 24104 24355 -1
CDS - ZP_06890910.1 HMPREF0220_0155 conserved hypothetical protein 24444 25175 1
CDS - EFH08750.1 HMPREF0220_0155 - 24444 25175 1
CDS - ZP_06890911.1 HMPREF0220_0156 glyoxalase II family zinc metallohydrolase 25168 26145 1
CDS - EFH08751.1 HMPREF0220_0156 - 25168 26145 1
CDS - ZP_06890912.1 HMPREF0220_0157 GTP pyrophosphokinase 26196 27008 1
CDS - EFH08752.1 HMPREF0220_0157 - 26196 27008 1
CDS - ZP_06890913.1 HMPREF0220_0158 Ser/Thr protein phosphatase 27117 27809 1
CDS - EFH08753.1 HMPREF0220_0158 - 27117 27809 1
CDS - ZP_06890914.1 HMPREF0220_0159 conserved hypothetical protein 27896 28837 1
CDS - EFH08754.1 HMPREF0220_0159 - 27896 28837 1
CDS - ZP_06890915.1 HMPREF0220_0160 methyltransferase 28874 30031 1
CDS - EFH08755.1 HMPREF0220_0160 - 28874 30031 1
CDS - ZP_06890916.1 HMPREF0220_0161 conserved hypothetical protein 30171 30743 1
CDS - EFH08756.1 HMPREF0220_0161 - 30171 30743 1
CDS - ZP_06890917.1 HMPREF0220_0162 conserved hypothetical protein 30771 31262 1
CDS - EFH08757.1 HMPREF0220_0162 - 30771 31262 1
CDS - ZP_06890918.1 HMPREF0220_0163 DNA-binding protein 31487 32038 1
CDS - EFH08758.1 HMPREF0220_0163 - 31487 32038 1
CDS - ZP_06890919.1 HMPREF0220_0164 conserved hypothetical protein 32124 33056 1
CDS - EFH08759.1 HMPREF0220_0164 - 32124 33056 1
CDS - ZP_06890920.1 HMPREF0220_0165 conserved hypothetical protein 33111 33974 1
CDS - EFH08760.1 HMPREF0220_0165 - 33111 33974 1
CDS bglP5 ZP_06890921.1 HMPREF0220_0166 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component 34170 36083 1
CDS bglP5 EFH08761.1 HMPREF0220_0166 - 34170 36083 1
CDS bglH2 ZP_06890922.1 HMPREF0220_0167 beta-glucosidase 36086 37552 1
CDS bglH2 EFH08762.1 HMPREF0220_0167 - 36086 37552 1
CDS bglG ZP_06890923.1 HMPREF0220_0168 transcription antiterminator 37576 38412 1
CDS bglG EFH08763.1 HMPREF0220_0168 - 37576 38412 1
CDS - ZP_06890924.1 HMPREF0220_0169 possible asparagine synthase (glutamine-hydrolyzing) 38979 40562 1
CDS - EFH08764.1 HMPREF0220_0169 - 38979 40562 1
CDS - ZP_06890925.1 HMPREF0220_0170 radical SAM domain protein 40627 41223 -1
CDS - EFH08765.1 HMPREF0220_0170 - 40627 41223 -1
CDS - ZP_06890926.1 HMPREF0220_0171 conserved hypothetical protein 41250 41777 -1
CDS - EFH08766.1 HMPREF0220_0171 - 41250 41777 -1
CDS ldhD ZP_06890927.1 HMPREF0220_0172 D-lactate dehydrogenase 42151 43149 -1
CDS ldhD EFH08767.1 HMPREF0220_0172 - 42151 43149 -1
CDS hadA ZP_06890928.1 HMPREF0220_0173 3-methyl-2-oxobutanoate dehydrogenase 43843 45042 1
CDS hadA EFH08768.1 HMPREF0220_0173 - 43843 45042 1
CDS fldI2 ZP_06890929.1 HMPREF0220_0174 R-phenyllactate dehydratase activator 45072 45881 1
CDS fldI2 EFH08769.1 HMPREF0220_0174 - 45072 45881 1
CDS fldB ZP_06890930.1 HMPREF0220_0175 R-phenyllactate dehydratase 45890 47122 1
CDS fldB EFH08770.1 HMPREF0220_0175 - 45890 47122 1
CDS fldC ZP_06890931.1 HMPREF0220_0176 R-phenyllactate dehydratase 47122 48249 1
CDS fldC EFH08771.1 HMPREF0220_0176 - 47122 48249 1
CDS bcd ZP_06890932.1 HMPREF0220_0177 butyryl-CoA dehydrogenase 48285 49430 1
CDS bcd EFH08772.1 HMPREF0220_0177 - 48285 49430 1
CDS etfB ZP_06890933.1 HMPREF0220_0178 electron transfer flavoprotein beta subunit 49463 50248 1
CDS etfB EFH08773.1 HMPREF0220_0178 - 49463 50248 1
CDS etfA ZP_06890934.1 HMPREF0220_0179 electron transfer flavoprotein alpha subunit 50267 51304 1
CDS etfA EFH08774.1 HMPREF0220_0179 - 50267 51304 1
CDS - ZP_06890935.1 HMPREF0220_0180 sigma-54-dependent transcriptional regulator 51786 53417 1
CDS - EFH08775.1 HMPREF0220_0180 - 51786 53417 1
CDS fbaB ZP_06890936.1 HMPREF0220_0181 fructose-bisphosphate aldolase 54032 54958 -1
CDS fbaB EFH08776.1 HMPREF0220_0181 - 54032 54958 -1
CDS - ZP_06890937.1 HMPREF0220_0182 conserved hypothetical protein 55288 55617 1
CDS - EFH08777.1 HMPREF0220_0182 - 55288 55617 1
CDS rsuA ZP_06890938.1 HMPREF0220_0183 ribosomal small subunit pseudouridine synthase A 55617 56339 1
CDS rsuA EFH08778.1 HMPREF0220_0183 - 55617 56339 1
CDS rumA2 ZP_06890939.1 HMPREF0220_0184 23S rRNA (uracil-5-)-methyltransferase 56366 57727 1
CDS rumA2 EFH08779.1 HMPREF0220_0184 - 56366 57727 1
CDS - ZP_06890940.1 HMPREF0220_0185 phage integrase family site-specific recombinase 57809 57973 -1
CDS - EFH08780.1 HMPREF0220_0185 - 57809 57973 -1
CDS - ZP_06890941.1 HMPREF0220_0186 cell surface protein 57976 58596 1
CDS - EFH08781.1 HMPREF0220_0186 - 57976 58596 1
CDS - ZP_06890942.1 HMPREF0220_0187 probable restriction endonuclease 58873 59442 -1
CDS - EFH08782.1 HMPREF0220_0187 - 58873 59442 -1
CDS - ZP_06890943.1 HMPREF0220_0188 ISCpe5 transposase 59875 60351 1
CDS - EFH08783.1 HMPREF0220_0188 - 59875 60351 1