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Clostridium difficile NAP08 contig00027, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS sigH ZP_06891583.1 HMPREF0220_0828 DNA-directed RNA polymerase sigma subunit SigH 57 719 -1
CDS sigH EFH08131.1 HMPREF0220_0828 - 57 719 -1
CDS - ZP_06891584.1 HMPREF0220_0829 tetracycline resistance protein 769 1296 -1
CDS - EFH08132.1 HMPREF0220_0829 - 769 1296 -1
CDS rlmB ZP_06891585.1 HMPREF0220_0830 RNA methyltransferase 1299 2045 -1
CDS rlmB EFH08133.1 HMPREF0220_0830 - 1299 2045 -1
CDS thyX ZP_06891586.1 HMPREF0220_0831 FAD-dependent thymidylate synthase 2049 2807 -1
CDS thyX EFH08134.1 HMPREF0220_0831 - 2049 2807 -1
CDS rnc3 ZP_06891587.1 HMPREF0220_0832 ribonuclease III 2913 3326 -1
CDS rnc3 EFH08135.1 HMPREF0220_0832 - 2913 3326 -1
CDS cysS ZP_06891588.1 HMPREF0220_0833 cysteine--tRNA ligase 3311 4714 -1
CDS cysS EFH08136.1 HMPREF0220_0833 - 3311 4714 -1
CDS - ZP_06891589.1 HMPREF0220_0834 conserved hypothetical protein 4853 5008 -1
CDS - EFH08137.1 HMPREF0220_0834 - 4853 5008 -1
CDS gltX ZP_06891590.1 HMPREF0220_0835 glutamate--tRNA ligase 5229 6710 -1
CDS gltX EFH08138.1 HMPREF0220_0835 - 5229 6710 -1
CDS proS2 ZP_06891591.1 HMPREF0220_0836 proline--tRNA ligase 7154 8686 -1
CDS proS2 EFH08139.1 HMPREF0220_0836 - 7154 8686 -1
CDS proS1 ZP_06891592.1 HMPREF0220_0837 proline--tRNA ligase 8721 10436 -1
CDS proS1 EFH08140.1 HMPREF0220_0837 - 8721 10436 -1
CDS ispF ZP_06891593.1 HMPREF0220_0838 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 10802 11287 -1
CDS ispF EFH08141.1 HMPREF0220_0838 - 10802 11287 -1
CDS ispD ZP_06891594.1 HMPREF0220_0839 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11284 12030 -1
CDS ispD EFH08142.1 HMPREF0220_0839 - 11284 12030 -1
CDS - ZP_06891595.1 HMPREF0220_0840 possible lipoate--protein ligase 12272 13204 -1
CDS - EFH08143.1 HMPREF0220_0840 - 12272 13204 -1
CDS ulaF ZP_06891596.1 HMPREF0220_0841 possible L-ribulose-5-phosphate 4-epimerase 13380 14030 -1
CDS ulaF EFH08144.1 HMPREF0220_0841 - 13380 14030 -1
CDS - ZP_06891597.1 HMPREF0220_0842 conserved hypothetical protein 14193 14666 -1
CDS - EFH08145.1 HMPREF0220_0842 - 14193 14666 -1
CDS - ZP_06891598.1 HMPREF0220_0843 PTS family porter 14701 16065 -1
CDS - EFH08146.1 HMPREF0220_0843 - 14701 16065 -1
CDS - ZP_06891599.1 HMPREF0220_0844 PTS family porter 16127 16429 -1
CDS - EFH08147.1 HMPREF0220_0844 - 16127 16429 -1
CDS - ZP_06891600.1 HMPREF0220_0845 PTS family fructose/mannitol porter component IIA 16508 16972 -1
CDS - EFH08148.1 HMPREF0220_0845 - 16508 16972 -1
CDS pspF8 ZP_06891601.1 HMPREF0220_0846 NtrC family transcriptional regulator 16950 19898 -1
CDS pspF8 EFH08149.1 HMPREF0220_0846 - 16950 19898 -1
CDS lpd2 ZP_06891602.1 HMPREF0220_0847 dihydrolipoyl dehydrogenase 20304 22034 -1
CDS lpd2 EFH08150.1 HMPREF0220_0847 - 20304 22034 -1
CDS - ZP_06891603.1 HMPREF0220_0848 E2 component of acetoin dehydrogenase enzyme system (dihydrolipoamide acetyltransferase) 22201 23247 -1
CDS - EFH08151.1 HMPREF0220_0848 - 22201 23247 -1
CDS bfmBAB ZP_06891604.1 HMPREF0220_0849 3-methyl-2-oxobutanoate dehydrogenase 23260 24246 -1
CDS bfmBAB EFH08152.1 HMPREF0220_0849 - 23260 24246 -1
CDS pdhA ZP_06891605.1 HMPREF0220_0850 pyruvate dehydrogenase complex E1 component alpha subunit 24271 25233 -1
CDS pdhA EFH08153.1 HMPREF0220_0850 - 24271 25233 -1
CDS - ZP_06891606.1 HMPREF0220_0851 transcriptional regulator 25271 26254 -1
CDS - EFH08154.1 HMPREF0220_0851 - 25271 26254 -1
CDS - ZP_06891607.1 HMPREF0220_0852 TPR repeats containing protein 26428 27879 -1
CDS - EFH08155.1 HMPREF0220_0852 - 26428 27879 -1
CDS - ZP_06891608.1 HMPREF0220_0853 response regulator 28047 28781 1
CDS - EFH08156.1 HMPREF0220_0853 - 28047 28781 1
CDS - ZP_06891609.1 HMPREF0220_0854 two component sensor histidine kinase 28705 29883 1
CDS - EFH08157.1 HMPREF0220_0854 - 28705 29883 1
CDS - ZP_06891610.1 HMPREF0220_0855 sugar transporter 30128 31501 -1
CDS - EFH08158.1 HMPREF0220_0855 - 30128 31501 -1
CDS xynB ZP_06891611.1 HMPREF0220_0856 possible xylan 1,4-beta-xylosidase 31599 33245 -1
CDS xynB EFH08159.1 HMPREF0220_0856 - 31599 33245 -1
CDS exg1 ZP_06891612.1 HMPREF0220_0857 possible glucan 1,3-beta-glucosidase 33267 34433 -1
CDS exg1 EFH08160.1 HMPREF0220_0857 - 33267 34433 -1
CDS - ZP_06891613.1 HMPREF0220_0858 AraC family transcription regulator 34650 35501 1
CDS - EFH08161.1 HMPREF0220_0858 - 34650 35501 1
CDS - ZP_06891614.1 HMPREF0220_0859 YjbE family integral membrane protein 35680 37857 -1
CDS - EFH08162.1 HMPREF0220_0859 - 35680 37857 -1
CDS pilT ZP_06891615.1 HMPREF0220_0860 PIN/TRAM domain protein 37986 39080 -1
CDS pilT EFH08163.1 HMPREF0220_0860 - 37986 39080 -1
CDS - ZP_06891616.1 HMPREF0220_0861 DNA integrity scanning protein 39169 40239 -1
CDS - EFH08164.1 HMPREF0220_0861 - 39169 40239 -1
CDS radA ZP_06891617.1 HMPREF0220_0862 DNA repair protein RadA 40242 41615 -1
CDS radA EFH08165.1 HMPREF0220_0862 - 40242 41615 -1
CDS - ZP_06891618.1 HMPREF0220_0863 ATPase with chaperone activity, ATP-binding subunit 41795 44242 -1
CDS - EFH08166.1 HMPREF0220_0863 - 41795 44242 -1
CDS - ZP_06891619.1 HMPREF0220_0864 ATP:guanido phosphotransferase domain protein 44229 45254 -1
CDS - EFH08167.1 HMPREF0220_0864 - 44229 45254 -1
CDS mcsA ZP_06891620.1 HMPREF0220_0865 UvrB/uvrC domain protein 45270 45764 -1
CDS mcsA EFH08168.1 HMPREF0220_0865 - 45270 45764 -1
CDS ctsR ZP_06891621.1 HMPREF0220_0866 transcriptional regulator CtsR 45771 46235 -1
CDS ctsR EFH08169.1 HMPREF0220_0866 - 45771 46235 -1
CDS fusA2 ZP_06891622.1 HMPREF0220_0867 elongation factor G 46692 48632 -1
CDS fusA2 EFH08170.1 HMPREF0220_0867 - 46692 48632 -1
CDS pyc ZP_06891623.1 HMPREF0220_0868 pyruvate carboxylase 48862 52293 -1
CDS pyc EFH08171.1 HMPREF0220_0868 - 48862 52293 -1
CDS - ZP_06891624.1 HMPREF0220_0869 conserved hypothetical protein 52606 53019 -1
CDS - EFH08172.1 HMPREF0220_0869 - 52606 53019 -1
tRNA - - HMPREF0220_t0002 tRNA-Val 53095 53170 -1
tRNA - - HMPREF0220_t0002 tRNA-Val 53095 53170 -1
tRNA - - HMPREF0220_t0003 tRNA-Arg 53183 53259 -1
tRNA - - HMPREF0220_t0003 tRNA-Arg 53183 53259 -1
tRNA - - HMPREF0220_t0004 tRNA-Cys 53267 53340 -1
tRNA - - HMPREF0220_t0004 tRNA-Cys 53267 53340 -1
tRNA - - HMPREF0220_t0005 tRNA-Lys 53348 53423 -1
tRNA - - HMPREF0220_t0005 tRNA-Lys 53348 53423 -1
tRNA - - HMPREF0220_t0006 tRNA-His 53432 53508 -1
tRNA - - HMPREF0220_t0006 tRNA-His 53432 53508 -1
tRNA - - HMPREF0220_t0007 tRNA-Met 53526 53602 -1
tRNA - - HMPREF0220_t0007 tRNA-Met 53526 53602 -1
tRNA - - HMPREF0220_t0008 tRNA-Met 53614 53690 -1
tRNA - - HMPREF0220_t0008 tRNA-Met 53614 53690 -1
tRNA - - HMPREF0220_t0009 tRNA-Phe 53697 53772 -1
tRNA - - HMPREF0220_t0009 tRNA-Phe 53697 53772 -1