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Clostridium difficile NAP08 contig00030, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06891636.1 HMPREF0220_0881 conserved hypothetical protein 109 291 -1
CDS - EFH07973.1 HMPREF0220_0881 - 109 291 -1
CDS dctP ZP_06891637.1 HMPREF0220_0882 TRAP tripartite ATP-independent transporter, binding protein 654 1898 1
CDS dctP EFH07974.1 HMPREF0220_0882 - 654 1898 1
CDS - ZP_06891638.1 HMPREF0220_0883 possible threonine-phosphate decarboxylase 2006 3082 -1
CDS - EFH07975.1 HMPREF0220_0883 - 2006 3082 -1
CDS hpt ZP_06891639.1 HMPREF0220_0884 hypoxanthine phosphoribosyltransferase 3311 3838 1
CDS hpt EFH07976.1 HMPREF0220_0884 - 3311 3838 1
CDS - ZP_06891640.1 HMPREF0220_0885 probable membrane-associated phosphatase 3927 4859 1
CDS - EFH07977.1 HMPREF0220_0885 - 3927 4859 1
CDS - ZP_06891641.1 HMPREF0220_0886 pyridine nucleotide-disulfide oxidoreductase 4920 6146 1
CDS - EFH07978.1 HMPREF0220_0886 - 4920 6146 1
CDS sspA ZP_06891642.1 HMPREF0220_0887 small acid-soluble spore protein A 6230 6451 1
CDS sspA EFH07979.1 HMPREF0220_0887 - 6230 6451 1
CDS - ZP_06891643.1 HMPREF0220_0888 conserved hypothetical protein 6640 6810 1
CDS - EFH07980.1 HMPREF0220_0888 - 6640 6810 1
CDS - ZP_06891644.1 HMPREF0220_0889 conserved hypothetical protein 6903 7364 -1
CDS - EFH07981.1 HMPREF0220_0889 - 6903 7364 -1
CDS - ZP_06891645.1 HMPREF0220_0890 conserved hypothetical protein 7547 8014 1
CDS - EFH07982.1 HMPREF0220_0890 - 7547 8014 1
CDS - ZP_06891646.1 HMPREF0220_0891 probable regulatory protein 8057 9820 1
CDS - EFH07983.1 HMPREF0220_0891 - 8057 9820 1
CDS - ZP_06891647.1 HMPREF0220_0892 probable iron-sulfur flavoprotein 9828 10436 1
CDS - EFH07984.1 HMPREF0220_0892 - 9828 10436 1
CDS - ZP_06891648.1 HMPREF0220_0893 propanediol utilization protein 10508 11077 1
CDS - EFH07985.1 HMPREF0220_0893 - 10508 11077 1
CDS nifJ ZP_06891649.1 HMPREF0220_0894 pyruvate:ferredoxin oxidoreductase 11595 15134 1
CDS nifJ EFH07986.1 HMPREF0220_0894 - 11595 15134 1
CDS - ZP_06891650.1 HMPREF0220_0895 probable calcium-chelating exported protein 15538 16491 -1
CDS - EFH07987.1 HMPREF0220_0895 - 15538 16491 -1
CDS - ZP_06891651.1 HMPREF0220_0896 D-beta-hydroxybutyrate permease 16992 18326 -1
CDS - EFH07988.1 HMPREF0220_0896 - 16992 18326 -1
CDS bdhA ZP_06891652.1 HMPREF0220_0897 3-hydroxybutyrate dehydrogenase 18388 19170 -1
CDS bdhA EFH07989.1 HMPREF0220_0897 - 18388 19170 -1
CDS ctfB ZP_06891653.1 HMPREF0220_0898 butyrate--acetoacetate CoA-transferase 19269 19934 -1
CDS ctfB EFH07990.1 HMPREF0220_0898 - 19269 19934 -1
CDS atoD ZP_06891654.1 HMPREF0220_0899 acetate CoA-transferase 19934 20590 -1
CDS atoD EFH07991.1 HMPREF0220_0899 - 19934 20590 -1
CDS thlA ZP_06891655.1 HMPREF0220_0900 acetyl-CoA C-acetyltransferase 20599 21777 -1
CDS thlA EFH07992.1 HMPREF0220_0900 - 20599 21777 -1
CDS - ZP_06891656.1 HMPREF0220_0901 LysR family transcriptional regulator 22130 23032 1
CDS - EFH07993.1 HMPREF0220_0901 - 22130 23032 1
CDS - ZP_06891657.1 HMPREF0220_0902 oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein 23247 24059 -1
CDS - EFH07994.1 HMPREF0220_0902 - 23247 24059 -1
CDS appB ZP_06891658.1 HMPREF0220_0903 oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein 24062 25021 -1
CDS appB EFH07995.1 HMPREF0220_0903 - 24062 25021 -1
CDS appA ZP_06891659.1 HMPREF0220_0904 oligopeptide ABC superfamily ATP binding cassette transporter, substrate-binding protein 25127 26686 -1
CDS appA EFH07996.1 HMPREF0220_0904 - 25127 26686 -1
CDS oppD ZP_06891660.1 HMPREF0220_0905 oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein 26905 27882 1
CDS oppD EFH07997.1 HMPREF0220_0905 - 26905 27882 1
CDS nikE ZP_06891661.1 HMPREF0220_0906 nickel ABC superfamily ATP binding cassette transporter, ABC protein 27883 28854 1
CDS nikE EFH07998.1 HMPREF0220_0906 - 27883 28854 1
CDS - ZP_06891662.1 HMPREF0220_0907 CPA1 family monovalent cation:proton (H+) antiporter-1 28987 31047 1
CDS - EFH07999.1 HMPREF0220_0907 - 28987 31047 1
CDS licT ZP_06891663.1 HMPREF0220_0908 transcription antiterminator LicT 31268 32149 1
CDS licT EFH08000.1 HMPREF0220_0908 - 31268 32149 1
CDS ptsG ZP_06891664.1 HMPREF0220_0909 PTS family porter, enzyme I 32451 34523 1
CDS ptsG EFH08001.1 HMPREF0220_0909 - 32451 34523 1
CDS - ZP_06891665.1 HMPREF0220_0910 AraC-type DNA-binding domain protein 34737 35606 -1
CDS - EFH08002.1 HMPREF0220_0910 - 34737 35606 -1
CDS murE ZP_06891666.1 HMPREF0220_0911 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 35770 37224 1
CDS murE EFH08003.1 HMPREF0220_0911 - 35770 37224 1
CDS - ZP_06891667.1 HMPREF0220_0912 probable signaling protein 37493 39772 1
CDS - EFH08004.1 HMPREF0220_0912 - 37493 39772 1
CDS - ZP_06891668.1 HMPREF0220_0913 hypothetical protein 40133 40252 1
CDS - EFH08005.1 HMPREF0220_0913 - 40133 40252 1
CDS ychF ZP_06891669.1 HMPREF0220_0914 GTP-binding protein YchF 40382 41479 -1
CDS ychF EFH08006.1 HMPREF0220_0914 - 40382 41479 -1
CDS - ZP_06891670.1 HMPREF0220_0915 M16 family metallopeptidase 41795 43060 1
CDS - EFH08007.1 HMPREF0220_0915 - 41795 43060 1
CDS - ZP_06891671.1 HMPREF0220_0916 M16 family peptidase 43060 44361 1
CDS - EFH08008.1 HMPREF0220_0916 - 43060 44361 1
CDS lgt ZP_06891672.1 HMPREF0220_0917 prolipoprotein diacylglyceryl transferase 44760 45506 1
CDS lgt EFH08009.1 HMPREF0220_0917 - 44760 45506 1
CDS mraW ZP_06891673.1 HMPREF0220_0918 S-adenosyl-methyltransferase MraW 45536 46471 1
CDS mraW EFH08010.1 HMPREF0220_0918 - 45536 46471 1
CDS - ZP_06891674.1 HMPREF0220_0919 conserved hypothetical protein 46948 47295 1
CDS - EFH08011.1 HMPREF0220_0919 - 46948 47295 1
CDS ftsI ZP_06891675.1 HMPREF0220_0920 cell division protein FtsI/penicillin-binding protein 47307 49286 1
CDS ftsI EFH08012.1 HMPREF0220_0920 - 47307 49286 1
CDS murF ZP_06891676.1 HMPREF0220_0921 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 49453 50826 1
CDS murF EFH08013.1 HMPREF0220_0921 - 49453 50826 1
CDS mraY ZP_06891677.1 HMPREF0220_0922 phospho-N-acetylmuramoyl-pentapeptide- transferase 50869 51837 1
CDS mraY EFH08014.1 HMPREF0220_0922 - 50869 51837 1
CDS murD ZP_06891678.1 HMPREF0220_0923 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 51856 53211 1
CDS murD EFH08015.1 HMPREF0220_0923 - 51856 53211 1
CDS ftsW ZP_06891679.1 HMPREF0220_0924 cell division protein FtsW 53263 54393 1
CDS ftsW EFH08016.1 HMPREF0220_0924 - 53263 54393 1
CDS murG ZP_06891680.1 HMPREF0220_0925 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 54411 55637 1
CDS murG EFH08017.1 HMPREF0220_0925 - 54411 55637 1
CDS - ZP_06891681.1 HMPREF0220_0926 FtsQ-type superfamily POTRA domain protein 55898 56638 1
CDS - EFH08018.1 HMPREF0220_0926 - 55898 56638 1
CDS - ZP_06891682.1 HMPREF0220_0927 conserved hypothetical protein 56661 57359 1
CDS - EFH08019.1 HMPREF0220_0927 - 56661 57359 1
CDS - ZP_06891683.1 HMPREF0220_0928 conserved hypothetical protein 57364 58038 1
CDS - EFH08020.1 HMPREF0220_0928 - 57364 58038 1
CDS sbp ZP_06891684.1 HMPREF0220_0929 small basic protein 58137 58490 1
CDS sbp EFH08021.1 HMPREF0220_0929 - 58137 58490 1
CDS ftsZ ZP_06891685.1 HMPREF0220_0930 cell division protein FtsZ 58677 59837 1
CDS ftsZ EFH08022.1 HMPREF0220_0930 - 58677 59837 1