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Clostridium difficile NAP08 contig00040, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06892278.1 HMPREF0220_1523 hypothetical protein 1 507 1
CDS - EFH07440.1 HMPREF0220_1523 - 1 507 1
CDS - ZP_06892279.1 HMPREF0220_1524 NCS2 family nucleobase:cation symporter-2 1841 3199 1
CDS - EFH07441.1 HMPREF0220_1524 - 1841 3199 1
CDS - ZP_06892280.1 HMPREF0220_1525 probable FAD-binding subunit of xanthine dehydrogenase dehydrogenase 3306 4100 1
CDS - EFH07442.1 HMPREF0220_1525 - 3306 4100 1
CDS xdhA3 ZP_06892281.1 HMPREF0220_1526 possible xanthine dehydrogenase 4093 6399 1
CDS xdhA3 EFH07443.1 HMPREF0220_1526 - 4093 6399 1
CDS - ZP_06892282.1 HMPREF0220_1527 transposase 6502 7815 1
CDS - EFH07444.1 HMPREF0220_1527 - 6502 7815 1
CDS yqeC ZP_06892283.1 HMPREF0220_1528 conserved hypothetical protein 7998 8720 1
CDS yqeC EFH07445.1 HMPREF0220_1528 - 7998 8720 1
CDS ygfJ ZP_06892284.1 HMPREF0220_1529 YgfJ family molybdenum hydroxylase accessory protein 8829 9407 1
CDS ygfJ EFH07446.1 HMPREF0220_1529 - 8829 9407 1
CDS - ZP_06892285.1 HMPREF0220_1530 molybdopterin-binding domain protein 9404 10423 1
CDS - EFH07447.1 HMPREF0220_1530 - 9404 10423 1
CDS - ZP_06892286.1 HMPREF0220_1531 ABC superfamily ATP binding cassette transporter, ABC protein 10761 12386 1
CDS - EFH07448.1 HMPREF0220_1531 - 10761 12386 1
CDS - ZP_06892287.1 HMPREF0220_1532 conserved hypothetical protein 12581 13033 1
CDS - EFH07449.1 HMPREF0220_1532 - 12581 13033 1
CDS - ZP_06892288.1 HMPREF0220_1533 phage integrase family prophage LambdaCh01 13230 14372 -1
CDS - EFH07450.1 HMPREF0220_1533 - 13230 14372 -1
CDS - ZP_06892289.1 HMPREF0220_1534 BlaI/MecI/CopY family transcriptional regulator 14683 15060 1
CDS - EFH07451.1 HMPREF0220_1534 - 14683 15060 1
CDS - ZP_06892290.1 HMPREF0220_1535 conserved hypothetical protein 15479 15751 -1
CDS - EFH07452.1 HMPREF0220_1535 - 15479 15751 -1
CDS - ZP_06892291.1 HMPREF0220_1536 conserved hypothetical protein 16059 16634 1
CDS - EFH07453.1 HMPREF0220_1536 - 16059 16634 1
CDS - ZP_06892292.1 HMPREF0220_1537 conserved hypothetical protein 16732 17730 1
CDS - EFH07454.1 HMPREF0220_1537 - 16732 17730 1
CDS - ZP_06892293.1 HMPREF0220_1538 protein of hypothetical function DUF1121 18070 18708 1
CDS - EFH07455.1 HMPREF0220_1538 - 18070 18708 1
CDS bmrU ZP_06892294.1 HMPREF0220_1539 YegS/Rv2252/BmrU family lipid kinase 18735 19634 1
CDS bmrU EFH07456.1 HMPREF0220_1539 - 18735 19634 1
CDS glnS ZP_06892295.1 HMPREF0220_1540 glutamine--tRNA ligase 19741 21405 -1
CDS glnS EFH07457.1 HMPREF0220_1540 - 19741 21405 -1
CDS - ZP_06892296.1 HMPREF0220_1541 conserved hypothetical protein 21697 22410 1
CDS - EFH07458.1 HMPREF0220_1541 - 21697 22410 1
CDS - ZP_06892297.1 HMPREF0220_1542 conserved hypothetical protein 22571 23134 1
CDS - EFH07459.1 HMPREF0220_1542 - 22571 23134 1
CDS - ZP_06892298.1 HMPREF0220_1543 conserved hypothetical protein 23439 25139 1
CDS - EFH07460.1 HMPREF0220_1543 - 23439 25139 1
CDS - ZP_06892299.1 HMPREF0220_1544 conserved hypothetical protein 25279 25926 1
CDS - EFH07461.1 HMPREF0220_1544 - 25279 25926 1
CDS lysC ZP_06892300.1 HMPREF0220_1545 aspartate kinase 26287 27480 1
CDS lysC EFH07462.1 HMPREF0220_1545 - 26287 27480 1
CDS lysA ZP_06892301.1 HMPREF0220_1546 diaminopimelate decarboxylase 27498 28790 1
CDS lysA EFH07463.1 HMPREF0220_1546 - 27498 28790 1
CDS - ZP_06892302.1 HMPREF0220_1547 probable lipoprotein 28987 29661 1
CDS - EFH07464.1 HMPREF0220_1547 - 28987 29661 1
CDS - ZP_06892303.1 HMPREF0220_1548 conserved hypothetical protein 29815 30900 -1
CDS - EFH07465.1 HMPREF0220_1548 - 29815 30900 -1
CDS rluB ZP_06892304.1 HMPREF0220_1549 ribosomal large subunit pseudouridine synthase B 31091 31807 1
CDS rluB EFH07466.1 HMPREF0220_1549 - 31091 31807 1
CDS - ZP_06892305.1 HMPREF0220_1550 rRNA methylase 31864 32442 1
CDS - EFH07467.1 HMPREF0220_1550 - 31864 32442 1
CDS rpiR ZP_06892306.1 HMPREF0220_1551 transcriptional regulator 32836 33708 1
CDS rpiR EFH07468.1 HMPREF0220_1551 - 32836 33708 1
CDS - ZP_06892307.1 HMPREF0220_1552 phage integrase 33861 34046 -1
CDS - EFH07469.1 HMPREF0220_1552 - 33861 34046 -1
CDS - ZP_06892308.1 HMPREF0220_1553 conserved hypothetical protein 35939 36232 1
CDS - EFH07470.1 HMPREF0220_1553 - 35939 36232 1
CDS - ZP_06892309.1 HMPREF0220_1554 CAAX amino protease 36362 36592 -1
CDS - EFH07471.1 HMPREF0220_1554 - 36362 36592 -1
CDS - ZP_06892310.1 HMPREF0220_1555 hypothetical protein 36752 36985 -1
CDS - EFH07472.1 HMPREF0220_1555 - 36752 36985 -1
CDS sdhC ZP_06892311.1 HMPREF0220_1556 succinate dehydrogenase cytochrome b558 subunit 37141 37314 -1
CDS sdhC EFH07473.1 HMPREF0220_1556 - 37141 37314 -1
CDS - ZP_06892312.1 HMPREF0220_1557 XRE family transcriptional regulator 37458 37673 -1
CDS - EFH07474.1 HMPREF0220_1557 - 37458 37673 -1
CDS - ZP_06892313.1 HMPREF0220_1558 conserved hypothetical protein 37684 38151 -1
CDS - EFH07475.1 HMPREF0220_1558 - 37684 38151 -1
CDS - ZP_06892314.1 HMPREF0220_1559 hypothetical protein 38305 38448 1
CDS - EFH07476.1 HMPREF0220_1559 - 38305 38448 1
CDS - ZP_06892315.1 HMPREF0220_1560 hypothetical protein 38655 38811 -1
CDS - EFH07477.1 HMPREF0220_1560 - 38655 38811 -1