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Clostridium difficile NAP08 contig00054, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06892967.1 HMPREF0220_2212 XRE family transcriptional regulator 273 407 -1
CDS - EFH06688.1 HMPREF0220_2212 - 273 407 -1
CDS - ZP_06892968.1 HMPREF0220_2213 conserved hypothetical protein 586 837 1
CDS - EFH06689.1 HMPREF0220_2213 - 586 837 1
CDS - ZP_06892969.1 HMPREF0220_2214 conserved hypothetical protein 1002 1190 -1
CDS - EFH06690.1 HMPREF0220_2214 - 1002 1190 -1
CDS - ZP_06892970.1 HMPREF0220_2215 hypothetical protein 1648 2307 -1
CDS - EFH06691.1 HMPREF0220_2215 - 1648 2307 -1
CDS - ZP_06892971.1 HMPREF0220_2216 MarR family transcriptional regulator 2363 2800 -1
CDS - EFH06692.1 HMPREF0220_2216 - 2363 2800 -1
CDS - ZP_06892972.1 HMPREF0220_2217 conjugative transposon protein 2941 3108 -1
CDS - EFH06693.1 HMPREF0220_2217 - 2941 3108 -1
CDS - ZP_06892973.1 HMPREF0220_2218 NLP/P60 family protein 3124 3288 -1
CDS - EFH06694.1 HMPREF0220_2218 - 3124 3288 -1
CDS - ZP_06892974.1 HMPREF0220_2219 VanZ like family protein 3824 4333 1
CDS - EFH06695.1 HMPREF0220_2219 - 3824 4333 1
CDS - ZP_06892975.1 HMPREF0220_2220 probable phage-related DNA-directed RNA polymerase polypeptide 4442 4636 -1
CDS - EFH06696.1 HMPREF0220_2220 - 4442 4636 -1
CDS sigE2 ZP_06892976.1 HMPREF0220_2221 RNA polymerase sigma-E factor 5129 5545 -1
CDS sigE2 EFH06697.1 HMPREF0220_2221 - 5129 5545 -1
CDS - ZP_06892977.1 HMPREF0220_2222 conserved hypothetical protein 6250 6474 1
CDS - EFH06698.1 HMPREF0220_2222 - 6250 6474 1
CDS - ZP_06892978.1 HMPREF0220_2223 conserved hypothetical protein 6458 7177 1
CDS - EFH06699.1 HMPREF0220_2223 - 6458 7177 1
CDS - ZP_06892979.1 HMPREF0220_2224 conserved hypothetical protein 7170 7616 1
CDS - EFH06700.1 HMPREF0220_2224 - 7170 7616 1
CDS - ZP_06892980.1 HMPREF0220_2225 conserved hypothetical protein 7606 8136 1
CDS - EFH06701.1 HMPREF0220_2225 - 7606 8136 1
CDS efp ZP_06892981.1 HMPREF0220_2226 elongation factor P 8434 9006 1
CDS efp EFH06702.1 HMPREF0220_2226 - 8434 9006 1
CDS - ZP_06892982.1 HMPREF0220_2227 conserved hypothetical protein 9098 9553 1
CDS - EFH06703.1 HMPREF0220_2227 - 9098 9553 1
CDS rnc2 ZP_06892983.1 HMPREF0220_2228 ribonuclease III 9715 10425 1
CDS rnc2 EFH06704.1 HMPREF0220_2228 - 9715 10425 1
CDS - ZP_06892984.1 HMPREF0220_2229 oxygen-independent coproporphyrinogen III oxidase 10479 11549 1
CDS - EFH06705.1 HMPREF0220_2229 - 10479 11549 1
CDS - ZP_06892985.1 HMPREF0220_2230 chromosome segregation protein Smc 11577 15131 1
CDS - EFH06706.1 HMPREF0220_2230 - 11577 15131 1
CDS ftsY ZP_06892986.1 HMPREF0220_2231 cell division protein FtsY 15158 16429 1
CDS ftsY EFH06707.1 HMPREF0220_2231 - 15158 16429 1
CDS ylxM ZP_06892987.1 HMPREF0220_2232 signal recognition particle associated protein 16532 16900 1
CDS ylxM EFH06708.1 HMPREF0220_2232 - 16532 16900 1
CDS ffh ZP_06892988.1 HMPREF0220_2233 signal recognition particle protein 16897 18249 1
CDS ffh EFH06709.1 HMPREF0220_2233 - 16897 18249 1
CDS rpsP ZP_06892989.1 HMPREF0220_2234 30S ribosomal protein S16 18287 18559 1
CDS rpsP EFH06710.1 HMPREF0220_2234 - 18287 18559 1
CDS - ZP_06892990.1 HMPREF0220_2235 RNA binding protein 18624 18851 1
CDS - EFH06711.1 HMPREF0220_2235 - 18624 18851 1
CDS rimM ZP_06892991.1 HMPREF0220_2236 16S rRNA processing protein RimM 18959 19474 1
CDS rimM EFH06712.1 HMPREF0220_2236 - 18959 19474 1
CDS trmD ZP_06892992.1 HMPREF0220_2237 tRNA (guanine-N(1)-)-methyltransferase 19483 20178 1
CDS trmD EFH06713.1 HMPREF0220_2237 - 19483 20178 1
CDS rplS ZP_06892993.1 HMPREF0220_2238 50S ribosomal protein L19 20352 20702 1
CDS rplS EFH06714.1 HMPREF0220_2238 - 20352 20702 1
CDS ylqF ZP_06892994.1 HMPREF0220_2239 ribosome biogenesis GTP-binding protein YlqF 21024 21920 1
CDS ylqF EFH06715.1 HMPREF0220_2239 - 21024 21920 1
CDS brnQ ZP_06892995.1 HMPREF0220_2240 LIVCS family branched chain amino acid:cation symporter 22308 23600 1
CDS brnQ EFH06716.1 HMPREF0220_2240 - 22308 23600 1
CDS brnQ2 ZP_06892996.1 HMPREF0220_2241 LIVCS family branched chain amino acid:cation symporter 24688 25980 1
CDS brnQ2 EFH06717.1 HMPREF0220_2241 - 24688 25980 1
CDS - ZP_06892997.1 HMPREF0220_2242 ribonucleoside-diphosphate reductase 26559 28748 1
CDS - EFH06718.1 HMPREF0220_2242 - 26559 28748 1
CDS rnhB ZP_06892998.1 HMPREF0220_2243 ribonuclease H 28816 29583 1
CDS rnhB EFH06719.1 HMPREF0220_2243 - 28816 29583 1
CDS - ZP_06892999.1 HMPREF0220_2244 possible (S)-2-hydroxy-acid oxidase 29641 30657 1
CDS - EFH06720.1 HMPREF0220_2244 - 29641 30657 1
CDS - ZP_06893000.1 HMPREF0220_2245 conserved hypothetical protein 30724 30972 1
CDS - EFH06721.1 HMPREF0220_2245 - 30724 30972 1
CDS - ZP_06893001.1 HMPREF0220_2246 probable regulatory protein 31145 31642 -1
CDS - EFH06722.1 HMPREF0220_2246 - 31145 31642 -1
CDS - ZP_06893002.1 HMPREF0220_2247 ABC superfamily ATP binding cassette transporter, permease protein 31886 32968 -1
CDS - EFH06723.1 HMPREF0220_2247 - 31886 32968 -1
CDS - ZP_06893003.1 HMPREF0220_2248 ABC superfamily ATP binding cassette transporter superfamily protein 32950 34050 -1
CDS - EFH06724.1 HMPREF0220_2248 - 32950 34050 -1
CDS sagG ZP_06893004.1 HMPREF0220_2249 ABC superfamily ATP binding cassette transporter, ABC protein 34064 34999 -1
CDS sagG EFH06725.1 HMPREF0220_2249 - 34064 34999 -1
CDS - ZP_06893005.1 HMPREF0220_2250 DNA-binding response regulator 35128 35784 -1
CDS - EFH06726.1 HMPREF0220_2250 - 35128 35784 -1
CDS - ZP_06893006.1 HMPREF0220_2251 two component sensor histidine kinase 35768 37003 -1
CDS - EFH06727.1 HMPREF0220_2251 - 35768 37003 -1
CDS - ZP_06893007.1 HMPREF0220_2252 endonuclease 37115 37459 1
CDS - EFH06728.1 HMPREF0220_2252 - 37115 37459 1
CDS - ZP_06893008.1 HMPREF0220_2253 Mg chelatase-like protein 37490 39091 1
CDS - EFH06729.1 HMPREF0220_2253 - 37490 39091 1
CDS - ZP_06893009.1 HMPREF0220_2254 SMF family DNA processing protein 39110 40210 1
CDS - EFH06730.1 HMPREF0220_2254 - 39110 40210 1
CDS topA ZP_06893010.1 HMPREF0220_2255 DNA topoisomerase TopA 40243 42330 1
CDS topA EFH06731.1 HMPREF0220_2255 - 40243 42330 1
CDS codY ZP_06893011.1 HMPREF0220_2256 GTP-sensing transcriptional pleiotropic repressor CodY 42495 43280 1
CDS codY EFH06732.1 HMPREF0220_2256 - 42495 43280 1
CDS - ZP_06893012.1 HMPREF0220_2257 AAA family ATPase 43396 44661 1
CDS - EFH06733.1 HMPREF0220_2257 - 43396 44661 1
CDS - ZP_06893013.1 HMPREF0220_2258 GNAT family acetyltransferase 44692 45462 1
CDS - EFH06734.1 HMPREF0220_2258 - 44692 45462 1
CDS - ZP_06893014.1 HMPREF0220_2259 Rrf2 family transcriptional regulator 45571 46017 1
CDS - EFH06735.1 HMPREF0220_2259 - 45571 46017 1
CDS iscS2 ZP_06893015.1 HMPREF0220_2260 cysteine desulfurase 46026 47228 1
CDS iscS2 EFH06736.1 HMPREF0220_2260 - 46026 47228 1
CDS nifU ZP_06893016.1 HMPREF0220_2261 FeS cluster assembly scaffold protein NifU 47282 47722 1
CDS nifU EFH06737.1 HMPREF0220_2261 - 47282 47722 1