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Clostridium difficile NAP08 contig00099, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS ugpC ZP_06893535.1 HMPREF0220_2782 SN-glycerol-3-phosphate ABC superfamily ATP binding cassette transporter, ABC protein 445 1515 1
CDS ugpC EFH06171.1 HMPREF0220_2782 - 445 1515 1
CDS - ZP_06893536.1 HMPREF0220_2783 ABC superfamily ATP binding cassette transporter, membrane protein 1499 2368 1
CDS - EFH06172.1 HMPREF0220_2783 - 1499 2368 1
CDS ugpE ZP_06893537.1 HMPREF0220_2784 sugar ABC superfamily ATP binding cassette transporter, membrane protein 2325 3272 1
CDS ugpE EFH06173.1 HMPREF0220_2784 - 2325 3272 1
CDS - ZP_06893538.1 HMPREF0220_2785 ABC superfamily ATP binding cassette transporter, solute-binding protein 3297 4607 1
CDS - EFH06174.1 HMPREF0220_2785 - 3297 4607 1
CDS - ZP_06893539.1 HMPREF0220_2786 probable nucleotide pyrophosphatase 4670 5932 1
CDS - EFH06175.1 HMPREF0220_2786 - 4670 5932 1
CDS uvrB ZP_06893540.1 HMPREF0220_2787 excision endonuclease subunit UvrB 6082 8088 1
CDS uvrB EFH06176.1 HMPREF0220_2787 - 6082 8088 1
CDS uvrA ZP_06893541.1 HMPREF0220_2788 excision endonuclease subunit UvrA 8107 10932 1
CDS uvrA EFH06177.1 HMPREF0220_2788 - 8107 10932 1
CDS uvrC ZP_06893542.1 HMPREF0220_2789 excision endonuclease subunit UvrC 11195 13012 1
CDS uvrC EFH06178.1 HMPREF0220_2789 - 11195 13012 1
CDS hprK ZP_06893543.1 HMPREF0220_2790 HPr kinase/phosphorylase 13012 13941 1
CDS hprK EFH06179.1 HMPREF0220_2790 - 13012 13941 1
CDS hexA ZP_06893544.1 HMPREF0220_2791 DNA mismatch repair protein HexA 14155 15951 1
CDS hexA EFH06180.1 HMPREF0220_2791 - 14155 15951 1
CDS hydA ZP_06893545.1 HMPREF0220_2792 periplasmic hydrogenase 16091 17872 -1
CDS hydA EFH06181.1 HMPREF0220_2792 - 16091 17872 -1
CDS hymB ZP_06893546.1 HMPREF0220_2793 NADH dehydrogenase (quinone) 17895 19781 -1
CDS hymB EFH06182.1 HMPREF0220_2793 - 17895 19781 -1
CDS hydC ZP_06893547.1 HMPREF0220_2794 Fe-hydrogenase 19798 20295 -1
CDS hydC EFH06183.1 HMPREF0220_2794 - 19798 20295 -1
CDS - ZP_06893548.1 HMPREF0220_2795 probable cardiolipin synthetase 20613 22094 -1
CDS - EFH06184.1 HMPREF0220_2795 - 20613 22094 -1
CDS - ZP_06893549.1 HMPREF0220_2796 formate/nitrite transporter 22413 23183 1
CDS - EFH06185.1 HMPREF0220_2796 - 22413 23183 1
CDS murB ZP_06893550.1 HMPREF0220_2797 UDP-N-acetylmuramate dehydrogenase 23416 24369 1
CDS murB EFH06186.1 HMPREF0220_2797 - 23416 24369 1
CDS - ZP_06893551.1 HMPREF0220_2798 probable phosphoesterase 24373 25086 1
CDS - EFH06187.1 HMPREF0220_2798 - 24373 25086 1
CDS - ZP_06893552.1 HMPREF0220_2799 ATP-binding protein 25117 25974 1
CDS - EFH06188.1 HMPREF0220_2799 - 25117 25974 1
CDS - ZP_06893553.1 HMPREF0220_2800 protein of hypothetical function UPF0052 and CofD 25974 27092 1
CDS - EFH06189.1 HMPREF0220_2800 - 25974 27092 1
CDS - ZP_06893554.1 HMPREF0220_2801 NUDIX hydrolase 27161 27586 1
CDS - EFH06190.1 HMPREF0220_2801 - 27161 27586 1
CDS - ZP_06893555.1 HMPREF0220_2802 protein of hypothetical function DUF199 27594 28556 1
CDS - EFH06191.1 HMPREF0220_2802 - 27594 28556 1
CDS dnaE ZP_06893556.1 HMPREF0220_2803 DNA-directed DNA polymerase III alpha subunit 28701 32270 1
CDS dnaE EFH06192.1 HMPREF0220_2803 - 28701 32270 1
CDS pfkA ZP_06893557.1 HMPREF0220_2804 6-phosphofructokinase 32479 33438 1
CDS pfkA EFH06193.1 HMPREF0220_2804 - 32479 33438 1
CDS pyk ZP_06893558.1 HMPREF0220_2805 pyruvate kinase 33490 35250 1
CDS pyk EFH06194.1 HMPREF0220_2805 - 33490 35250 1
CDS rumA ZP_06893559.1 HMPREF0220_2806 23S rRNA (uracil-5-)-methyltransferase 35425 36783 1
CDS rumA EFH06195.1 HMPREF0220_2806 - 35425 36783 1
CDS - ZP_06893560.1 HMPREF0220_2807 conserved hypothetical protein 37260 37757 -1
CDS - EFH06196.1 HMPREF0220_2807 - 37260 37757 -1
CDS - ZP_06893561.1 HMPREF0220_2808 conserved hypothetical protein 37761 37898 -1
CDS - EFH06197.1 HMPREF0220_2808 - 37761 37898 -1
CDS - ZP_06893562.1 HMPREF0220_2809 conserved hypothetical protein 38308 38484 -1
CDS - EFH06198.1 HMPREF0220_2809 - 38308 38484 -1
CDS - ZP_06893563.1 HMPREF0220_2810 conserved hypothetical protein 39394 39828 1
CDS - EFH06199.1 HMPREF0220_2810 - 39394 39828 1
CDS rsgA2 ZP_06893564.1 HMPREF0220_2811 ribosome small subunit-dependent GTPase A 39825 40892 1
CDS rsgA2 EFH06200.1 HMPREF0220_2811 - 39825 40892 1
CDS - ZP_06893565.1 HMPREF0220_2812 conserved hypothetical protein 41435 42133 1
CDS - EFH06201.1 HMPREF0220_2812 - 41435 42133 1
CDS - ZP_06893566.1 HMPREF0220_2813 probable signaling protein 42712 43668 -1
CDS - EFH06202.1 HMPREF0220_2813 - 42712 43668 -1
CDS - ZP_06893567.1 HMPREF0220_2814 ABC superfamily ATP binding cassette transporter, ABC protein 44356 45366 1
CDS - EFH06203.1 HMPREF0220_2814 - 44356 45366 1
CDS - ZP_06893568.1 HMPREF0220_2815 ABC superfamily ATP binding cassette transporter, permease protein 45344 46207 1
CDS - EFH06204.1 HMPREF0220_2815 - 45344 46207 1
CDS - ZP_06893569.1 HMPREF0220_2816 ABC superfamily ATP binding cassette transporter, permease protein 46204 46998 1
CDS - EFH06205.1 HMPREF0220_2816 - 46204 46998 1
CDS - ZP_06893570.1 HMPREF0220_2817 MOP/MATE family multidrug-resistance efflux pump 47260 48660 1
CDS - EFH06206.1 HMPREF0220_2817 - 47260 48660 1
CDS - ZP_06893571.1 HMPREF0220_2818 response regulator 48993 49823 1
CDS - EFH06207.1 HMPREF0220_2818 - 48993 49823 1
CDS - ZP_06893572.1 HMPREF0220_2819 ABC superfamily ATP binding cassette transporter, ABC protein 50100 51638 -1
CDS - EFH06208.1 HMPREF0220_2819 - 50100 51638 -1
CDS - ZP_06893573.1 HMPREF0220_2820 DJ-1/PfpI family protein 52920 53246 1
CDS - EFH06209.1 HMPREF0220_2820 - 52920 53246 1
CDS - ZP_06893574.1 HMPREF0220_2821 transcriptional regulator 53251 53574 -1
CDS - EFH06210.1 HMPREF0220_2821 - 53251 53574 -1
CDS - ZP_06893575.1 HMPREF0220_2822 oxygen-insensitive NAD(P)H nitroreductase 53726 54244 1
CDS - EFH06211.1 HMPREF0220_2822 - 53726 54244 1
CDS - ZP_06893576.1 HMPREF0220_2823 conserved hypothetical protein 54435 55103 -1
CDS - EFH06212.1 HMPREF0220_2823 - 54435 55103 -1
CDS - ZP_06893577.1 HMPREF0220_2824 GntR family transcriptional regulator 55218 56633 1
CDS - EFH06213.1 HMPREF0220_2824 - 55218 56633 1
CDS - ZP_06893578.1 HMPREF0220_2825 AraC family transcription regulator 56832 57314 1
CDS - EFH06214.1 HMPREF0220_2825 - 56832 57314 1
CDS clpP ZP_06893579.1 HMPREF0220_2826 ATP-dependent Clp protease proteolytic subunit 57311 57895 1
CDS clpP EFH06215.1 HMPREF0220_2826 - 57311 57895 1
CDS - ZP_06893580.1 HMPREF0220_2827 glycosyltransferase 58198 59274 1
CDS - EFH06216.1 HMPREF0220_2827 - 58198 59274 1
CDS - ZP_06893581.1 HMPREF0220_2828 collagen triple helix repeat protein 59353 61389 1
CDS - EFH06217.1 HMPREF0220_2828 - 59353 61389 1
CDS - ZP_06893582.1 HMPREF0220_2829 4Fe-4S ferredoxin iron-sulfur binding domain protein 61558 62319 1
CDS - EFH06218.1 HMPREF0220_2829 - 61558 62319 1
CDS - ZP_06893583.1 HMPREF0220_2830 conserved hypothetical protein 62624 62902 1
CDS - EFH06219.1 HMPREF0220_2830 - 62624 62902 1
CDS - ZP_06893584.1 HMPREF0220_2831 conserved hypothetical protein 63197 63765 1
CDS - EFH06220.1 HMPREF0220_2831 - 63197 63765 1