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Clostridium difficile NAP08 contig00117, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06894076.1 HMPREF0220_3323 conserved hypothetical protein 1 997 1
CDS - EFH05599.1 HMPREF0220_3323 - 1 997 1
CDS - ZP_06894077.1 HMPREF0220_3324 membrane protein 1183 2037 -1
CDS - EFH05600.1 HMPREF0220_3324 - 1183 2037 -1
CDS - ZP_06894078.1 HMPREF0220_3325 conserved hypothetical protein 2301 2624 -1
CDS - EFH05601.1 HMPREF0220_3325 - 2301 2624 -1
CDS - ZP_06894079.1 HMPREF0220_3326 conserved hypothetical protein 2827 3456 1
CDS - EFH05602.1 HMPREF0220_3326 - 2827 3456 1
CDS ruvC ZP_06894080.1 HMPREF0220_3327 crossover junction endoribonuclease subunit C 3768 4277 1
CDS ruvC EFH05603.1 HMPREF0220_3327 - 3768 4277 1
CDS ruvA ZP_06894081.1 HMPREF0220_3328 crossover junction ATP-dependent DNA helicase RuvA 4270 4872 1
CDS ruvA EFH05604.1 HMPREF0220_3328 - 4270 4872 1
CDS ruvB ZP_06894082.1 HMPREF0220_3329 crossover junction ATP-dependent DNA helicase RuvB 4979 5998 1
CDS ruvB EFH05605.1 HMPREF0220_3329 - 4979 5998 1
CDS - ZP_06894083.1 HMPREF0220_3330 conserved hypothetical protein 6087 6215 1
CDS - EFH05606.1 HMPREF0220_3330 - 6087 6215 1
CDS queA ZP_06894084.1 HMPREF0220_3331 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 6316 7341 1
CDS queA EFH05607.1 HMPREF0220_3331 - 6316 7341 1
CDS - ZP_06894085.1 HMPREF0220_3332 conserved hypothetical protein 7353 7838 1
CDS - EFH05608.1 HMPREF0220_3332 - 7353 7838 1
CDS tgt ZP_06894086.1 HMPREF0220_3333 queuine tRNA-ribosyltransferase 7899 9038 1
CDS tgt EFH05609.1 HMPREF0220_3333 - 7899 9038 1
CDS yajC ZP_06894087.1 HMPREF0220_3334 preprotein translocase 9172 9465 1
CDS yajC EFH05610.1 HMPREF0220_3334 - 9172 9465 1
CDS - ZP_06894088.1 HMPREF0220_3335 conserved hypothetical protein 9523 9885 1
CDS - EFH05611.1 HMPREF0220_3335 - 9523 9885 1
CDS - ZP_06894089.1 HMPREF0220_3336 conserved hypothetical protein 9936 10094 1
CDS - EFH05612.1 HMPREF0220_3336 - 9936 10094 1
CDS - ZP_06894090.1 HMPREF0220_3337 conserved hypothetical protein 10111 10296 1
CDS - EFH05613.1 HMPREF0220_3337 - 10111 10296 1
CDS - ZP_06894091.1 HMPREF0220_3338 cell surface protein 10681 12627 1
CDS - EFH05614.1 HMPREF0220_3338 - 10681 12627 1
CDS - ZP_06894092.1 HMPREF0220_3339 cell surface protein 13090 14493 1
CDS - EFH05615.1 HMPREF0220_3339 - 13090 14493 1
CDS - ZP_06894093.1 HMPREF0220_3340 cell surface protein 14955 16607 1
CDS - EFH05616.1 HMPREF0220_3340 - 14955 16607 1
CDS - ZP_06894094.1 HMPREF0220_3341 surface surface protein 16825 18414 1
CDS - EFH05617.1 HMPREF0220_3341 - 16825 18414 1
CDS - ZP_06894095.1 HMPREF0220_3342 S-layer protein precursor 18627 20807 1
CDS - EFH05618.1 HMPREF0220_3342 - 18627 20807 1
CDS secA ZP_06894096.1 HMPREF0220_3343 preprotein translocase subunit SecA 20977 23352 1
CDS secA EFH05619.1 HMPREF0220_3343 - 20977 23352 1
CDS - ZP_06894097.1 HMPREF0220_3344 cell surface protein (probable S-layer protein precursor) 23766 25637 1
CDS - EFH05620.1 HMPREF0220_3344 - 23766 25637 1
CDS - ZP_06894098.1 HMPREF0220_3345 conserved hypothetical protein 25744 26451 1
CDS - EFH05621.1 HMPREF0220_3345 - 25744 26451 1
CDS - ZP_06894099.1 HMPREF0220_3346 cell surface protein 26484 28316 1
CDS - EFH05622.1 HMPREF0220_3346 - 26484 28316 1
CDS gtcA ZP_06894100.1 HMPREF0220_3347 cell wall teichoic acid glycosylation protein GtcA 28363 28764 -1
CDS gtcA EFH05623.1 HMPREF0220_3347 - 28363 28764 -1
CDS cwp84 ZP_06894101.1 HMPREF0220_3348 cell surface protein 28992 31403 1
CDS cwp84 EFH05624.1 HMPREF0220_3348 - 28992 31403 1
CDS - ZP_06894102.1 HMPREF0220_3349 cell surface protein 31706 33283 1
CDS - EFH05625.1 HMPREF0220_3349 - 31706 33283 1
CDS - ZP_06894103.1 HMPREF0220_3350 brp/Blh family beta-carotene 15,15'-monooxygenase 33418 34863 1
CDS - EFH05626.1 HMPREF0220_3350 - 33418 34863 1
CDS amiD4 ZP_06894104.1 HMPREF0220_3351 N-acetylmuramoyl-L-alanine amidase 35118 37142 1
CDS amiD4 EFH05627.1 HMPREF0220_3351 - 35118 37142 1
CDS tuaA ZP_06894105.1 HMPREF0220_3352 sugar transferase domain protein 37350 38048 1
CDS tuaA EFH05628.1 HMPREF0220_3352 - 37350 38048 1
CDS - ZP_06894106.1 HMPREF0220_3353 cell surface protein 38143 39198 1
CDS - EFH05629.1 HMPREF0220_3353 - 38143 39198 1
CDS mviN ZP_06894107.1 HMPREF0220_3354 integral membrane protein MviN 39314 40870 1
CDS mviN EFH05630.1 HMPREF0220_3354 - 39314 40870 1
CDS pgcA ZP_06894108.1 HMPREF0220_3355 phosphoglucomutase 40916 42622 1
CDS pgcA EFH05631.1 HMPREF0220_3355 - 40916 42622 1
CDS manC ZP_06894109.1 HMPREF0220_3356 mannose-1-phosphate guanylyltransferase 42644 43717 1
CDS manC EFH05632.1 HMPREF0220_3356 - 42644 43717 1
CDS - ZP_06894110.1 HMPREF0220_3357 hypohetical Teichoic Acid Biosynthesis protein 43729 44451 1
CDS - EFH05633.1 HMPREF0220_3357 - 43729 44451 1
CDS - ZP_06894111.1 HMPREF0220_3358 probable polysaccharide polymerase 44467 45624 1
CDS - EFH05634.1 HMPREF0220_3358 - 44467 45624 1
CDS - ZP_06894112.1 HMPREF0220_3359 glycosyltransferase 45645 46466 1
CDS - EFH05635.1 HMPREF0220_3359 - 45645 46466 1
CDS - ZP_06894113.1 HMPREF0220_3360 probable minor teichoic acid biosynthesis protein 46466 47656 1
CDS - EFH05636.1 HMPREF0220_3360 - 46466 47656 1
CDS tuaG ZP_06894114.1 HMPREF0220_3361 group 2 glycosyl transferase 47685 48434 1
CDS tuaG EFH05637.1 HMPREF0220_3361 - 47685 48434 1
CDS wbcL ZP_06894115.1 HMPREF0220_3362 possible glycosyltransferase 48456 49364 1
CDS wbcL EFH05638.1 HMPREF0220_3362 - 48456 49364 1
CDS - ZP_06894116.1 HMPREF0220_3363 group 2 glycosyl transferase 49412 50164 1
CDS - EFH05639.1 HMPREF0220_3363 - 49412 50164 1
CDS ugd ZP_06894117.1 HMPREF0220_3364 UDP-glucose 6-dehydrogenase 50118 51485 1
CDS ugd EFH05640.1 HMPREF0220_3364 - 50118 51485 1
CDS - ZP_06894118.1 HMPREF0220_3365 glycosyl transferase 51491 52582 1
CDS - EFH05641.1 HMPREF0220_3365 - 51491 52582 1
CDS - ZP_06894119.1 HMPREF0220_3366 capsular polysaccharide biosynthesis protein 52638 54578 1
CDS - EFH05642.1 HMPREF0220_3366 - 52638 54578 1
CDS - ZP_06894120.1 HMPREF0220_3367 probable cell-wall hydrolase 54766 55473 1
CDS - EFH05643.1 HMPREF0220_3367 - 54766 55473 1
CDS yngK ZP_06894121.1 HMPREF0220_3368 FenI protein 55774 57885 1
CDS yngK EFH05644.1 HMPREF0220_3368 - 55774 57885 1
CDS - ZP_06894122.1 HMPREF0220_3369 LytR family transcriptional regulator 58083 59048 -1
CDS - EFH05645.1 HMPREF0220_3369 - 58083 59048 -1
CDS - ZP_06894123.1 HMPREF0220_3370 LytR family transcriptional regulator 59333 60289 -1
CDS - EFH05646.1 HMPREF0220_3370 - 59333 60289 -1
CDS supH ZP_06894124.1 HMPREF0220_3371 possible sugar-phosphatase 60658 61446 1
CDS supH EFH05647.1 HMPREF0220_3371 - 60658 61446 1
CDS - ZP_06894125.1 HMPREF0220_3372 probable lipoprotein 61577 62047 -1
CDS - EFH05648.1 HMPREF0220_3372 - 61577 62047 -1