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Clostridium difficile NAP08 contig00133, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS sigB ZP_06894361.1 HMPREF0220_3608 RNA polymerase sigma-B factor 41 814 -1
CDS sigB EFH05356.1 HMPREF0220_3608 - 41 814 -1
CDS rsbW ZP_06894362.1 HMPREF0220_3609 non-specific serine/threonine protein kinase 814 1221 -1
CDS rsbW EFH05357.1 HMPREF0220_3609 - 814 1221 -1
CDS - ZP_06894363.1 HMPREF0220_3610 anti-sigma B factor antagonist 1225 1542 -1
CDS - EFH05358.1 HMPREF0220_3610 - 1225 1542 -1
CDS - ZP_06894364.1 HMPREF0220_3611 conserved hypothetical protein 1554 1814 -1
CDS - EFH05359.1 HMPREF0220_3611 - 1554 1814 -1
CDS - ZP_06894365.1 HMPREF0220_3612 conserved hypothetical protein 1814 2110 -1
CDS - EFH05360.1 HMPREF0220_3612 - 1814 2110 -1
CDS gyrA ZP_06894366.1 HMPREF0220_3613 DNA topoisomerase (ATP-hydrolyzing) subunit A 2179 4605 -1
CDS gyrA EFH05361.1 HMPREF0220_3613 - 2179 4605 -1
CDS gyrB ZP_06894367.1 HMPREF0220_3614 DNA topoisomerase (ATP-hydrolyzing) subunit B 4623 6524 -1
CDS gyrB EFH05362.1 HMPREF0220_3614 - 4623 6524 -1
CDS recF ZP_06894368.1 HMPREF0220_3615 recombination protein F 6525 7640 -1
CDS recF EFH05363.1 HMPREF0220_3615 - 6525 7640 -1
CDS yaaA ZP_06894369.1 HMPREF0220_3616 S4 domain protein YaaA 7657 7863 -1
CDS yaaA EFH05364.1 HMPREF0220_3616 - 7657 7863 -1
CDS dnaN ZP_06894370.1 HMPREF0220_3617 DNA-directed DNA polymerase III beta subunit 8000 9106 -1
CDS dnaN EFH05365.1 HMPREF0220_3617 - 8000 9106 -1
CDS dnaA ZP_06894371.1 HMPREF0220_3618 DNA-directed DNA replication initiator protein 9348 10667 -1
CDS dnaA EFH05366.1 HMPREF0220_3618 - 9348 10667 -1
CDS rpmH ZP_06894372.1 HMPREF0220_3619 50S ribosomal protein L34 11326 11463 1
CDS rpmH EFH05367.1 HMPREF0220_3619 - 11326 11463 1
CDS rnpA2 ZP_06894373.1 HMPREF0220_3620 ribonuclease P 11541 11885 1
CDS rnpA2 EFH05368.1 HMPREF0220_3620 - 11541 11885 1
CDS - ZP_06894374.1 HMPREF0220_3621 alpha-hemolysin 11917 12168 1
CDS - EFH05369.1 HMPREF0220_3621 - 11917 12168 1
CDS spoJ ZP_06894375.1 HMPREF0220_3622 ParB/SpoJ family partitioning protein 12200 12907 1
CDS spoJ EFH05370.1 HMPREF0220_3622 - 12200 12907 1
CDS jag ZP_06894376.1 HMPREF0220_3623 SpoIIIJ-associated protein Jag 12876 13505 1
CDS jag EFH05371.1 HMPREF0220_3623 - 12876 13505 1
CDS trmE ZP_06894377.1 HMPREF0220_3624 tRNA modification GTPase TrmE 13608 14996 1
CDS trmE EFH05372.1 HMPREF0220_3624 - 13608 14996 1
CDS gidA ZP_06894378.1 HMPREF0220_3625 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 15091 16986 1
CDS gidA EFH05373.1 HMPREF0220_3625 - 15091 16986 1
CDS gidB ZP_06894379.1 HMPREF0220_3626 16S rRNA methyltransferase GidB 16979 17698 1
CDS gidB EFH05374.1 HMPREF0220_3626 - 16979 17698 1
CDS spoOJ ZP_06894380.1 HMPREF0220_3627 chromosome partitioning protein SpoOJ 17861 18646 1
CDS spoOJ EFH05375.1 HMPREF0220_3627 - 17861 18646 1
CDS soj2 ZP_06894381.1 HMPREF0220_3628 sporulation initiation inhibitor protein Soj 18781 19554 1
CDS soj2 EFH05376.1 HMPREF0220_3628 - 18781 19554 1
CDS spo0J ZP_06894382.1 HMPREF0220_3629 chromosome partitioning protein SpoOJ 19556 20419 1
CDS spo0J EFH05377.1 HMPREF0220_3629 - 19556 20419 1
CDS csd ZP_06894383.1 HMPREF0220_3630 possible cysteine desulfurase 20452 21594 1
CDS csd EFH05378.1 HMPREF0220_3630 - 20452 21594 1
CDS - ZP_06894384.1 HMPREF0220_3631 conserved hypothetical protein 21730 22305 -1
CDS - EFH05379.1 HMPREF0220_3631 - 21730 22305 -1
CDS - ZP_06894385.1 HMPREF0220_3632 probable transcriptional regulator 22541 23857 1
CDS - EFH05380.1 HMPREF0220_3632 - 22541 23857 1
CDS yedF ZP_06894386.1 HMPREF0220_3633 selenium metabolism protein YedF 23932 24564 1
CDS yedF EFH05381.1 HMPREF0220_3633 - 23932 24564 1
CDS - ZP_06894387.1 HMPREF0220_3634 conserved hypothetical protein 24637 24900 1
CDS - EFH05382.1 HMPREF0220_3634 - 24637 24900 1
CDS - ZP_06894388.1 HMPREF0220_3635 protein of hypothetical function DUF951 24915 25100 1
CDS - EFH05383.1 HMPREF0220_3635 - 24915 25100 1
CDS - ZP_06894389.1 HMPREF0220_3636 aminotransferase 25203 26399 1
CDS - EFH05384.1 HMPREF0220_3636 - 25203 26399 1
CDS rpsF ZP_06894390.1 HMPREF0220_3637 30S ribosomal protein S6 26613 26891 1
CDS rpsF EFH05385.1 HMPREF0220_3637 - 26613 26891 1
CDS ssb3 ZP_06894391.1 HMPREF0220_3638 single-strand binding protein 26928 27362 1
CDS ssb3 EFH05386.1 HMPREF0220_3638 - 26928 27362 1
CDS rpsR ZP_06894392.1 HMPREF0220_3639 30S ribosomal protein S18 27381 27608 1
CDS rpsR EFH05387.1 HMPREF0220_3639 - 27381 27608 1
CDS - ZP_06894393.1 HMPREF0220_3640 conserved hypothetical protein 27751 28071 1
CDS - EFH05388.1 HMPREF0220_3640 - 27751 28071 1
CDS - ZP_06894394.1 HMPREF0220_3641 brp/Blh family beta-carotene 15,15'-monooxygenase 28079 29035 1
CDS - EFH05389.1 HMPREF0220_3641 - 28079 29035 1
CDS - ZP_06894395.1 HMPREF0220_3642 DHH family protein 29046 31040 1
CDS - EFH05390.1 HMPREF0220_3642 - 29046 31040 1
CDS rplI ZP_06894396.1 HMPREF0220_3643 50S ribosomal protein L9 31041 31490 1
CDS rplI EFH05391.1 HMPREF0220_3643 - 31041 31490 1
CDS dnaB ZP_06894397.1 HMPREF0220_3644 replicative DNA helicase DnaB 31509 32837 1
CDS dnaB EFH05392.1 HMPREF0220_3644 - 31509 32837 1
CDS - ZP_06894398.1 HMPREF0220_3645 conserved hypothetical protein 33042 33350 1
CDS - EFH05393.1 HMPREF0220_3645 - 33042 33350 1
CDS purA ZP_06894399.1 HMPREF0220_3646 adenylosuccinate synthase 33432 34721 1
CDS purA EFH05394.1 HMPREF0220_3646 - 33432 34721 1