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Clostridium difficile NAP08 contig00134, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
tRNA - - HMPREF0220_t0035 tRNA-Lys 4 79 1
tRNA - - HMPREF0220_t0035 tRNA-Lys 4 79 1
tRNA - - HMPREF0220_t0036 tRNA-Glu 86 160 1
tRNA - - HMPREF0220_t0036 tRNA-Glu 86 160 1
tRNA - - HMPREF0220_t0037 tRNA-Val 165 240 1
tRNA - - HMPREF0220_t0037 tRNA-Val 165 240 1
tRNA - - HMPREF0220_t0038 tRNA-Thr 274 348 1
tRNA - - HMPREF0220_t0038 tRNA-Thr 274 348 1
CDS dnaC ZP_06894400.1 HMPREF0220_3647 DNA replication protein 730 1722 -1
CDS dnaC EFH05305.1 HMPREF0220_3647 - 730 1722 -1
CDS - ZP_06894401.1 HMPREF0220_3648 conserved hypothetical protein 1731 2789 -1
CDS - EFH05306.1 HMPREF0220_3648 - 1731 2789 -1
CDS pepN ZP_06894402.1 HMPREF0220_3649 aminopeptidase N 2914 4377 1
CDS pepN EFH05307.1 HMPREF0220_3649 - 2914 4377 1
CDS - ZP_06894403.1 HMPREF0220_3650 beta-lactamase superfamily I metal-dependent hydrolase 4462 5259 1
CDS - EFH05308.1 HMPREF0220_3650 - 4462 5259 1
CDS - ZP_06894404.1 HMPREF0220_3651 probable signaling protein 5272 7374 1
CDS - EFH05309.1 HMPREF0220_3651 - 5272 7374 1
CDS - ZP_06894405.1 HMPREF0220_3652 alpha/beta knot family protein 7442 7921 1
CDS - EFH05310.1 HMPREF0220_3652 - 7442 7921 1
CDS licB3 ZP_06894406.1 HMPREF0220_3653 PTS family lichenan porter component IIB 8070 8381 1
CDS licB3 EFH05311.1 HMPREF0220_3653 - 8070 8381 1
CDS - ZP_06894407.1 HMPREF0220_3654 lichenan-specific phosphotransferase enzyme IIA component 8429 8746 1
CDS - EFH05312.1 HMPREF0220_3654 - 8429 8746 1
CDS - ZP_06894408.1 HMPREF0220_3655 GntR family transcriptional regulator 8958 9659 1
CDS - EFH05313.1 HMPREF0220_3655 - 8958 9659 1
CDS - ZP_06894409.1 HMPREF0220_3656 PTS family porter 9880 11181 1
CDS - EFH05314.1 HMPREF0220_3656 - 9880 11181 1
CDS - ZP_06894410.1 HMPREF0220_3657 outer surface protein 11319 12413 1
CDS - EFH05315.1 HMPREF0220_3657 - 11319 12413 1
CDS - ZP_06894411.1 HMPREF0220_3658 metal-dependent hydrolase 12415 13548 1
CDS - EFH05316.1 HMPREF0220_3658 - 12415 13548 1
CDS - ZP_06894412.1 HMPREF0220_3659 L-seryl-tRNA(Sec) selenium transferase 13566 14675 1
CDS - EFH05317.1 HMPREF0220_3659 - 13566 14675 1
CDS - ZP_06894413.1 HMPREF0220_3660 4-hydroxy-2-oxoglutarate aldolase 14725 15480 1
CDS - EFH05318.1 HMPREF0220_3660 - 14725 15480 1
CDS - ZP_06894414.1 HMPREF0220_3661 PfkB family carbohydrate kinase 15485 16477 1
CDS - EFH05319.1 HMPREF0220_3661 - 15485 16477 1
CDS - ZP_06894415.1 HMPREF0220_3662 LysR family transcriptional regulator 16665 17546 -1
CDS - EFH05320.1 HMPREF0220_3662 - 16665 17546 -1
CDS - EFH05321.1 HMPREF0220_3663 - 17819 19207 1
CDS - ZP_06894416.1 HMPREF0220_3663 conserved hypothetical protein 17819 19207 1
CDS - ZP_06894417.1 HMPREF0220_3664 conserved hypothetical protein 19235 20188 1
CDS - EFH05322.1 HMPREF0220_3664 - 19235 20188 1
CDS - ZP_06894418.1 HMPREF0220_3665 conserved hypothetical protein 20241 20465 1
CDS - EFH05323.1 HMPREF0220_3665 - 20241 20465 1
CDS - ZP_06894419.1 HMPREF0220_3666 conserved hypothetical protein 20458 20970 1
CDS - EFH05324.1 HMPREF0220_3666 - 20458 20970 1
CDS - ZP_06894420.1 HMPREF0220_3667 conserved hypothetical protein 21002 21856 1
CDS - EFH05325.1 HMPREF0220_3667 - 21002 21856 1
CDS entB2 ZP_06894421.1 HMPREF0220_3668 isochorismatase family hydrolase 22482 23003 1
CDS entB2 EFH05326.1 HMPREF0220_3668 - 22482 23003 1
CDS - ZP_06894422.1 HMPREF0220_3669 probable transcription antiterminator 23492 25573 1
CDS - EFH05327.1 HMPREF0220_3669 - 23492 25573 1
CDS - ZP_06894423.1 HMPREF0220_3670 PTS family porter 25588 25875 1
CDS - EFH05328.1 HMPREF0220_3670 - 25588 25875 1
CDS - ZP_06894424.1 HMPREF0220_3671 SgaT family transporter 25902 27173 1
CDS - EFH05329.1 HMPREF0220_3671 - 25902 27173 1
CDS - ZP_06894425.1 HMPREF0220_3672 probable sugar-phosphate isomerase 27230 27829 1
CDS - EFH05330.1 HMPREF0220_3672 - 27230 27829 1
CDS dapA1 ZP_06894426.1 HMPREF0220_3673 possible dihydrodipicolinate synthase 27801 28718 1
CDS dapA1 EFH05331.1 HMPREF0220_3673 - 27801 28718 1
CDS kdgA ZP_06894427.1 HMPREF0220_3674 possible 4-hydroxy-2-oxoglutarate aldolase 28847 29479 1
CDS kdgA EFH05332.1 HMPREF0220_3674 - 28847 29479 1
CDS - ZP_06894428.1 HMPREF0220_3675 major facilitator family transporter 29665 30942 -1
CDS - EFH05333.1 HMPREF0220_3675 - 29665 30942 -1
CDS - ZP_06894429.1 HMPREF0220_3676 possible aminoacylase 30944 32134 -1
CDS - EFH05334.1 HMPREF0220_3676 - 30944 32134 -1
CDS - ZP_06894430.1 HMPREF0220_3677 fhu operon transcription regulator 32319 33197 1
CDS - EFH05335.1 HMPREF0220_3677 - 32319 33197 1
CDS - ZP_06894431.1 HMPREF0220_3678 probable signaling protein 33976 36483 1
CDS - EFH05336.1 HMPREF0220_3678 - 33976 36483 1
CDS - ZP_06894432.1 HMPREF0220_3679 bacteriocin-associated integral membrane protein 36826 38994 1
CDS - EFH05337.1 HMPREF0220_3679 - 36826 38994 1
CDS - ZP_06894433.1 HMPREF0220_3680 ABC superfamily ATP binding cassette transporter, ABC protein 38999 39616 1
CDS - EFH05338.1 HMPREF0220_3680 - 38999 39616 1
CDS - ZP_06894434.1 HMPREF0220_3681 alkylphosphonate uptake protein 39805 40149 1
CDS - EFH05339.1 HMPREF0220_3681 - 39805 40149 1
CDS - ZP_06894435.1 HMPREF0220_3682 pentapeptide repeats domain protein 40706 41587 1
CDS - EFH05340.1 HMPREF0220_3682 - 40706 41587 1
CDS - ZP_06894436.1 HMPREF0220_3683 conserved hypothetical protein 41700 42104 1
CDS - EFH05341.1 HMPREF0220_3683 - 41700 42104 1
CDS - ZP_06894437.1 HMPREF0220_3684 GNAT family acetyltransferase 42280 42729 1
CDS - EFH05342.1 HMPREF0220_3684 - 42280 42729 1
CDS - ZP_06894438.1 HMPREF0220_3685 conserved hypothetical protein 42886 43263 -1
CDS - EFH05343.1 HMPREF0220_3685 - 42886 43263 -1
CDS - ZP_06894439.1 HMPREF0220_3686 Zn-dependent protease 43525 44442 1
CDS - EFH05344.1 HMPREF0220_3686 - 43525 44442 1
CDS - ZP_06894440.1 HMPREF0220_3687 sodium/hydrogen exchanger family/TrkA domain protein 44925 46343 1
CDS - EFH05345.1 HMPREF0220_3687 - 44925 46343 1
CDS - ZP_06894441.1 HMPREF0220_3688 MerR family transcriptional regulator 46419 47231 1
CDS - EFH05346.1 HMPREF0220_3688 - 46419 47231 1
CDS - ZP_06894442.1 HMPREF0220_3689 conserved hypothetical protein 47639 48256 1
CDS - EFH05347.1 HMPREF0220_3689 - 47639 48256 1
CDS - ZP_06894443.1 HMPREF0220_3690 conserved hypothetical protein 48412 48864 -1
CDS - EFH05348.1 HMPREF0220_3690 - 48412 48864 -1
CDS - ZP_06894444.1 HMPREF0220_3691 mate efflux family protein 49148 50506 1
CDS - EFH05349.1 HMPREF0220_3691 - 49148 50506 1
CDS - ZP_06894445.1 HMPREF0220_3692 hypothetical protein 50482 50616 1
CDS - EFH05350.1 HMPREF0220_3692 - 50482 50616 1