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Clostridium difficile QCD-23m63, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
tRNA - - CdifQCD-2_020200t00549 tRNA-His 4 80 1
tRNA - - CdifQCD-2_020200t00551 tRNA-Lys 89 164 1
tRNA - - CdifQCD-2_020200t00553 tRNA-Cys 172 245 1
tRNA - - CdifQCD-2_020200t00555 tRNA-Arg 253 329 1
tRNA - - CdifQCD-2_020200t00557 tRNA-Val 342 417 1
CDS - ZP_05399513.1 CdifQCD-2_020200000067 hypothetical protein 493 906 1
CDS - ZP_05399514.1 CdifQCD-2_020200000072 pyruvate carboxylase 1219 4650 1
CDS - ZP_05399515.1 CdifQCD-2_020200000077 putative translation elongation factor 4892 6820 1
CDS - ZP_05399516.1 CdifQCD-2_020200000082 transcriptional regulator 7278 7742 1
CDS - ZP_05399517.1 CdifQCD-2_020200000087 putative DNA repair protein 7749 8243 1
CDS - ZP_05399518.1 CdifQCD-2_020200000092 ATP:guanido phosphotransferase 8259 9284 1
CDS - ZP_05399519.1 CdifQCD-2_020200000097 ATP-dependent Clp protease 9271 11718 1
CDS - ZP_05399520.1 CdifQCD-2_020200000102 DNA repair protein RadA 11898 13271 1
CDS - ZP_05399521.1 CdifQCD-2_020200000107 DNA integrity scanning protein DisA 13274 14344 1
CDS - ZP_05399522.1 CdifQCD-2_020200000112 hypothetical protein 14433 15527 1
CDS - ZP_05399523.1 CdifQCD-2_020200000117 hypothetical protein 15656 17833 1
CDS - ZP_05399524.1 CdifQCD-2_020200000122 AraC family transcription regulator 18011 18862 -1
CDS - ZP_05399525.1 CdifQCD-2_020200000127 putative beta-glucosidase 19078 20244 1
CDS - ZP_05399526.1 CdifQCD-2_020200000132 putative beta-xylosidase 20266 21912 1
CDS - ZP_05399527.1 CdifQCD-2_020200000137 putative xylose transporter 22010 23383 1
CDS - ZP_05399528.1 CdifQCD-2_020200000142 two-component sensor histidine kinase 23628 24725 -1
CDS - ZP_05399529.1 CdifQCD-2_020200000147 two-component response regulator 24730 25464 -1
CDS - ZP_05399530.1 CdifQCD-2_020200000152 TPR repeats containing protein 25632 27083 1
CDS - ZP_05399531.1 CdifQCD-2_020200000157 transcriptional regulator 27287 28240 1
CDS - ZP_05399532.1 CdifQCD-2_020200000162 acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit 28278 29240 1
CDS - ZP_05399533.1 CdifQCD-2_020200000167 acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit 29265 30251 1
CDS - ZP_05399534.1 CdifQCD-2_020200000172 E2 component of acetoin dehydrogenase enzyme system (dihydrolipoamide acetyltransferase) 30264 31310 1
CDS - ZP_05399535.1 CdifQCD-2_020200000177 E3 component of acetoin dehydrogenase enzyme system (dihydrolipoyl dehydrogenase) 31477 33207 1
CDS - ZP_05399536.1 CdifQCD-2_020200000182 putative transcription antiterminator 33613 36561 1
CDS - ZP_05399537.1 CdifQCD-2_020200000187 PTS system, IIA component 36539 37003 1
CDS - ZP_05399538.1 CdifQCD-2_020200000192 PTS system, IIB component 37097 37384 1
CDS - ZP_05399539.1 CdifQCD-2_020200000197 PTS system, IIC component 37461 38810 1
CDS - ZP_05399540.1 CdifQCD-2_020200000202 hypothetical protein 38845 39318 1
CDS - ZP_05399541.1 CdifQCD-2_020200000207 putative sugar-phosphate aldolase 39481 40131 1
CDS - ZP_05399542.1 CdifQCD-2_020200000212 putative lipoate-protein ligase 40307 41257 1
CDS - ZP_05399543.1 CdifQCD-2_020200000217 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 41453 42166 1
CDS - ZP_05399544.1 CdifQCD-2_020200000222 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 42163 42648 1
CDS - ZP_05399545.1 CdifQCD-2_020200000227 prolyl-tRNA synthetase 43014 44729 1
CDS - ZP_05399546.1 CdifQCD-2_020200000232 prolyl-tRNA synthetase 44851 46296 1
CDS gltX ZP_05399547.1 CdifQCD-2_020200000237 glutamyl-tRNA synthetase 46740 48221 1
CDS - ZP_05399548.1 CdifQCD-2_020200000242 hypothetical protein 48442 48597 1
CDS - ZP_05399549.1 CdifQCD-2_020200000247 cysteinyl-tRNA synthetase 48742 50139 1
CDS - ZP_05399550.1 CdifQCD-2_020200000252 hypothetical protein 50124 50537 1
CDS thyX ZP_05399551.1 CdifQCD-2_020200000257 FAD-dependent thymidylate synthase 50643 51401 1
CDS - ZP_05399552.1 CdifQCD-2_020200000262 putative tRNA/rRNA methyltransferase 51414 52151 1
CDS - ZP_05399553.1 CdifQCD-2_020200000267 hypothetical protein 52154 52681 1
CDS - ZP_05399554.1 CdifQCD-2_020200000272 RNA polymerase factor sigma-70 52746 53393 1
CDS - ZP_05399555.1 CdifQCD-2_020200000277 elongation factor Tu 53467 54660 1
CDS rpmG ZP_05399556.1 CdifQCD-2_020200000282 50S ribosomal protein L33 54910 55059 1
CDS - ZP_05399557.1 CdifQCD-2_020200000287 preprotein translocase SecE subunit 55085 55306 1
CDS - ZP_05399558.1 CdifQCD-2_020200000292 transcription antitermination protein 55326 55868 1
CDS rplK ZP_05399559.1 CdifQCD-2_020200000297 50S ribosomal protein L11 55916 56341 1
CDS - ZP_05399560.1 CdifQCD-2_020200000302 50S ribosomal protein L1 56412 57110 1
CDS - ZP_05399561.1 CdifQCD-2_020200000307 50S ribosomal protein L10 57333 57839 1
CDS - ZP_05399562.1 CdifQCD-2_020200000312 50S ribosomal protein L7/L12 57897 58262 1
CDS - ZP_05399563.1 CdifQCD-2_020200000317 NADP-dependent 7-alpha-hydroxysteroid dehydrogenase 58630 59418 1
CDS rpoB ZP_05399564.1 CdifQCD-2_020200000322 DNA-directed RNA polymerase subunit beta 59891 63607 1
CDS - ZP_05399565.1 CdifQCD-2_020200000327 DNA-directed RNA polymerase subunit beta' 63649 67134 1
CDS rpsL ZP_05399566.1 CdifQCD-2_020200000332 30S ribosomal protein S12 67424 67846 1
CDS - ZP_05399567.1 CdifQCD-2_020200000337 30S ribosomal protein S7 67969 68439 1
CDS - ZP_05399568.1 CdifQCD-2_020200000342 translation elongation factor G 68488 70554 1
CDS - ZP_05399569.1 CdifQCD-2_020200000347 elongation factor Tu 70645 71838 1
CDS - ZP_05399570.1 CdifQCD-2_020200000352 30S ribosomal protein S10 72206 72517 1
CDS - ZP_05399571.1 CdifQCD-2_020200000357 50S ribosomal protein L3 72609 73238 1
CDS - ZP_05399572.1 CdifQCD-2_020200000362 50S ribosomal protein L4 73268 73891 1
CDS - ZP_05399573.1 CdifQCD-2_020200000367 50S ribosomal protein L23 73891 74181 1
CDS rplB ZP_05399574.1 CdifQCD-2_020200000372 50S ribosomal protein L2 74211 75041 1
CDS - ZP_05399575.1 CdifQCD-2_020200000377 30S ribosomal protein S19 75076 75357 1
CDS - ZP_05399576.1 CdifQCD-2_020200000382 50S ribosomal protein L22 75389 75724 1
CDS - ZP_05399577.1 CdifQCD-2_020200000387 30S ribosomal protein S3 75748 76563 1
CDS rplP ZP_05399578.1 CdifQCD-2_020200000392 50S ribosomal protein L16 76599 77030 1
CDS - ZP_05399579.1 CdifQCD-2_020200000397 50S ribosomal protein L29 77032 77235 1
CDS - ZP_05399580.1 CdifQCD-2_020200000402 30S ribosomal protein S17 77259 77513 1
CDS - ZP_05399581.1 CdifQCD-2_020200000407 50S ribosomal protein L14 77539 77907 1
CDS - ZP_05399582.1 CdifQCD-2_020200000412 50S ribosomal protein L24 77931 78236 1
CDS - ZP_05399583.1 CdifQCD-2_020200000417 50S ribosomal protein L5 78266 78808 1
CDS - ZP_05399584.1 CdifQCD-2_020200000422 30S ribosomal protein S14 78826 79011 1
CDS - ZP_05399585.1 CdifQCD-2_020200000427 30S ribosomal protein S8 79044 79442 1
CDS - ZP_05399586.1 CdifQCD-2_020200000432 50S ribosomal protein L6 79473 80015 1
CDS - ZP_05399587.1 CdifQCD-2_020200000437 50S ribosomal protein L18 80051 80419 1
CDS - ZP_05399588.1 CdifQCD-2_020200000442 30S ribosomal protein S5 80440 80949 1
CDS - ZP_05399589.1 CdifQCD-2_020200000447 50S ribosomal protein L30 80964 81149 1
CDS - ZP_05399590.1 CdifQCD-2_020200000452 50S ribosomal protein L15 81182 81625 1
CDS - ZP_05399591.1 CdifQCD-2_020200000457 preprotein translocase SecY subunit 81669 82937 1
CDS adk ZP_05399592.1 CdifQCD-2_020200000462 adenylate kinase 82954 83604 1
CDS - ZP_05399593.1 CdifQCD-2_020200000467 methionine aminopeptidase 83605 84351 1
CDS - ZP_05399594.1 CdifQCD-2_020200000472 putative ribosomal protein 84373 84642 1
CDS - ZP_05399595.1 CdifQCD-2_020200000477 translation initiation factor IF-1 84680 84898 1
CDS rpmJ ZP_05399596.1 CdifQCD-2_020200000482 50S ribosomal protein L36 84934 85047 1
CDS rpsM ZP_05399597.1 CdifQCD-2_020200000487 30S ribosomal protein S13 85200 85571 1
CDS - ZP_05399598.1 CdifQCD-2_020200000492 30S ribosomal protein S11 85607 86005 1
CDS - ZP_05399599.1 CdifQCD-2_020200000497 30S ribosomal protein S4 86037 86660 1
CDS - ZP_05399600.1 CdifQCD-2_020200000502 DNA-directed RNA polymerase subunit alpha 86738 87685 1
CDS - ZP_05399601.1 CdifQCD-2_020200000507 50S ribosomal protein L17 87706 88047 1
CDS - ZP_05399602.1 CdifQCD-2_020200000512 ABC transporter, ATP-binding protein 88167 89000 1
CDS cbiO ZP_05399603.1 CdifQCD-2_020200000517 cobalt transporter ATP-binding subunit 88988 89854 1
CDS - ZP_05399604.1 CdifQCD-2_020200000522 ABC transporter, permease protein 89848 90651 1
CDS - ZP_05399605.1 CdifQCD-2_020200000527 tRNA pseudouridine synthase 1 90684 91415 1
CDS rplM ZP_05399606.1 CdifQCD-2_020200000532 50S ribosomal protein L13 91535 91966 1
CDS - ZP_05399607.1 CdifQCD-2_020200000537 30S ribosomal protein S9 91995 92387 1
CDS - ZP_05399608.1 CdifQCD-2_020200000542 germination-specific N-acetylmuramoyl-L-alanine amidase 92896 93600 1