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Clostridium difficile QCD-23m63, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05400156.1 CdifQCD-2_020200003412 protease 389 2944 1
CDS - ZP_05400157.1 CdifQCD-2_020200003417 putative phosphohydrolase 3048 3626 1
CDS - ZP_05400158.1 CdifQCD-2_020200003422 putative DNA repair protein 3660 4136 1
CDS - ZP_05400159.1 CdifQCD-2_020200003427 putative reductase 4670 5491 1
CDS - ZP_05400160.1 CdifQCD-2_020200003432 putative signaling protein 5728 8229 1
CDS - ZP_05400161.1 CdifQCD-2_020200003437 putative aminoacyl-histidine dipeptidase 8433 9884 -1
CDS - ZP_05400162.1 CdifQCD-2_020200003442 putative DNA mismatch repair protein 10201 12579 1
CDS - ZP_05400163.1 CdifQCD-2_020200003447 hypothetical protein 12647 13060 1
CDS - ZP_05400164.1 CdifQCD-2_020200003452 arginyl-tRNA synthetase 13386 15086 1
CDS - ZP_05400165.1 CdifQCD-2_020200003457 hypothetical protein 15340 16263 1
CDS - ZP_05400166.1 CdifQCD-2_020200003462 hypothetical protein 16268 16474 -1
CDS - ZP_05400167.1 CdifQCD-2_020200003467 putative adenosylcobamide-dependent radical SAM superfamily protein 16610 18364 1
CDS - ZP_05400168.1 CdifQCD-2_020200003472 hypothetical protein 18382 19524 1
CDS - ZP_05400169.1 CdifQCD-2_020200003477 hypothetical protein 19698 20636 -1
CDS - ZP_05400170.1 CdifQCD-2_020200003482 acetyltransferase 20862 21440 1
CDS - ZP_05400171.1 CdifQCD-2_020200003487 putative phosphate butyryltransferase 21555 22466 1
CDS - ZP_05400172.1 CdifQCD-2_020200003492 putative bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase 23072 24991 1
CDS - ZP_05400173.1 CdifQCD-2_020200003497 hypothetical protein 25179 25322 1
CDS - ZP_05400174.1 CdifQCD-2_020200003502 putative carbon monoxide dehydrogenase accessory protein 25300 26079 1
CDS - ZP_05400175.1 CdifQCD-2_020200003507 formate--tetrahydrofolate ligase 26328 28004 1
CDS - ZP_05400176.1 CdifQCD-2_020200003512 methenyltetrahydrofolate cyclohydrolase 28089 28721 1
CDS - ZP_05400177.1 CdifQCD-2_020200003517 FolD bifunctional protein 28813 29685 1
CDS - ZP_05400178.1 CdifQCD-2_020200003522 hypothetical protein 29720 30394 1
CDS - ZP_05400179.1 CdifQCD-2_020200003527 putative methylenetetrahydrofolate reductase 30429 31310 1
CDS - ZP_05400180.1 CdifQCD-2_020200003532 putative carbon monoxide dehydrogenase/acetyl-CoA synthase complex, dihydrolipoyl dehydrogenase subunit 31354 32739 1
CDS - ZP_05400181.1 CdifQCD-2_020200003537 putative carbon monoxide dehydrogenase/acetyl-CoA synthase complex,nickel-inserting subunit 32795 33565 1
CDS - ZP_05400182.1 CdifQCD-2_020200003542 acetyl-CoA decarbonylase/synthase complex subunit delta 33585 34529 1
CDS - ZP_05400183.1 CdifQCD-2_020200003547 acetyl-CoA decarbonylase/synthase complex subunit gamma 34560 35927 1
CDS - ZP_05400184.1 CdifQCD-2_020200003552 putative carbon monoxide dehydrogenase/acetyl-CoA synthase complex,methyltransferase subunit 35977 36783 1
CDS - ZP_05400185.1 CdifQCD-2_020200003557 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta 36840 38966 1
CDS - ZP_05400186.1 CdifQCD-2_020200003562 glycine cleavage system protein H 39053 39430 1
CDS - ZP_05400187.1 CdifQCD-2_020200003567 putative iron-sulfur protein 39542 41470 1
CDS - ZP_05400188.1 CdifQCD-2_020200003572 putative radical SAM superfamily protein 41495 42367 1
CDS - ZP_05400189.1 CdifQCD-2_020200003577 putative radical SAM superfamily protein 42364 43302 1
CDS - ZP_05400190.1 CdifQCD-2_020200003582 putative biotin/lipoate-protein ligase 43349 44164 1
CDS - ZP_05400191.1 CdifQCD-2_020200003587 hypothetical protein 44315 44506 1
CDS - ZP_05400192.1 CdifQCD-2_020200003592 hypothetical protein 44525 44941 1
CDS - ZP_05400193.1 CdifQCD-2_020200003597 hypothetical protein 44957 45307 1
CDS - ZP_05400194.1 CdifQCD-2_020200003602 histidinol-phosphatase 45576 46355 1
CDS - ZP_05400195.1 CdifQCD-2_020200003607 hypothetical protein 46671 47546 -1
CDS - ZP_05400196.1 CdifQCD-2_020200003612 hypothetical protein 48098 48610 1
CDS - ZP_05400197.1 CdifQCD-2_020200003617 putative aminotransferase 48915 50012 -1
CDS - ZP_05400198.1 CdifQCD-2_020200003622 glycerol kinase 50305 51831 1
CDS - ZP_05400199.1 CdifQCD-2_020200003627 putative ethanolamine transporter 51872 52987 1
CDS - ZP_05400200.1 CdifQCD-2_020200003632 DeoR family transcriptional regulator 53268 54032 -1
tRNA - - CdifQCD-2_020200t04059 tRNA-Ser 54291 54381 1
CDS - ZP_05400201.1 CdifQCD-2_020200003637 putative chemotaxis protein 54469 55257 1
CDS - ZP_05400202.1 CdifQCD-2_020200003642 putative chemotaxis protein 55278 56018 1
CDS - ZP_05400203.1 CdifQCD-2_020200003647 hypothetical protein 56196 56564 1
CDS - ZP_05400204.1 CdifQCD-2_020200003652 putative lipoprotein 56656 56820 1
CDS - ZP_05400205.1 CdifQCD-2_020200003657 putative lipoprotein 56810 58117 1
CDS - ZP_05400206.1 CdifQCD-2_020200003662 putative signaling protein 58170 61199 1
CDS - ZP_05400207.1 CdifQCD-2_020200003667 putative ATP-dependent DNA helicase 61276 63342 1
CDS - ZP_05400208.1 CdifQCD-2_020200003672 hypothetical protein 63879 64022 1
CDS - ZP_05400209.1 CdifQCD-2_020200003677 amino acid ABC transporter, substrate-binding protein 64304 65119 1
CDS - ZP_05400210.1 CdifQCD-2_020200003682 amino acid ABC transporter, permease protein 65147 65824 1
CDS - ZP_05400211.1 CdifQCD-2_020200003687 amino acid ABC transporter, ATP-binding protein 65883 66605 1
CDS - ZP_05400212.1 CdifQCD-2_020200003692 putative cysteine desulfurase 67252 68403 1
CDS - ZP_05400213.1 CdifQCD-2_020200003707 fimbrial protein (pilin) 69761 70564 1
CDS - ZP_05400214.1 CdifQCD-2_020200003712 putative reductase 70807 71448 1
CDS - ZP_05400215.1 CdifQCD-2_020200003717 pyruvate formate-lyase activating enzyme 71847 72581 -1
CDS - ZP_05400216.1 CdifQCD-2_020200003722 formate acetyltransferase 72741 74972 -1
CDS - ZP_05400217.1 CdifQCD-2_020200003727 Ca2+/Na+ antiporter 75331 76326 1
CDS - ZP_05400218.1 CdifQCD-2_020200003732 putative ATP-dependent RNA helicase 76417 78030 1
CDS - ZP_05400219.1 CdifQCD-2_020200003737 putative transcription antiterminator 78437 80422 1
CDS - ZP_05400220.1 CdifQCD-2_020200003742 glucitol operon activator protein 80427 80861 1
CDS - ZP_05400221.1 CdifQCD-2_020200003747 PTS system, glucitol/sorbitol-specific IIc2 component 80890 81450 1
CDS - ZP_05400222.1 CdifQCD-2_020200003752 PTS system, glucitol/sorbitol-specific IIB component 81514 81882 1
CDS - ZP_05400223.1 CdifQCD-2_020200003757 PTS system, glucitol/sorbitol-specific IIC component 81907 82473 1
CDS - ZP_05400224.1 CdifQCD-2_020200003762 PTS system, glucitol/sorbitol-specific IIA component 82514 82879 1
CDS - ZP_05400225.1 CdifQCD-2_020200003767 sorbitol-6-phosphate dehydrogenase 82979 83752 1
CDS - ZP_05400226.1 CdifQCD-2_020200003772 putative formate dehydrogenase 84100 86208 1
CDS - ZP_05400227.1 CdifQCD-2_020200003777 anti-sigma F factor antagonist 86295 86630 1
CDS - ZP_05400228.1 CdifQCD-2_020200003782 anti-sigma F factor 86644 87072 1
CDS - ZP_05400229.1 CdifQCD-2_020200003787 RNA polymerase sigma-F factor 87095 87859 1
CDS - ZP_05400230.1 CdifQCD-2_020200003792 stage V sporulation protein AC 88146 88583 1
CDS - ZP_05400231.1 CdifQCD-2_020200003797 stage V sporulation protein AD 88737 89750 1
CDS - ZP_05400232.1 CdifQCD-2_020200003802 stage V sporulation protein AE 89763 90125 1
CDS - ZP_05400233.1 CdifQCD-2_020200003807 LacI family transcriptional regulator 90309 91325 1
CDS - ZP_05400234.1 CdifQCD-2_020200003812 hypothetical protein 91699 92541 1
CDS - ZP_05400235.1 CdifQCD-2_020200003817 hypothetical protein 92556 93020 1
CDS - ZP_05400236.1 CdifQCD-2_020200003822 putative amidohydrolase 93034 94179 1
CDS - ZP_05400237.1 CdifQCD-2_020200003827 hypothetical protein 94223 95158 1
CDS - ZP_05400238.1 CdifQCD-2_020200003832 penicillin-binding protein 95784 97964 -1
CDS - ZP_05400239.1 CdifQCD-2_020200003837 hypothetical protein 98318 98479 -1
CDS - ZP_05400240.1 CdifQCD-2_020200003842 hypothetical protein 98694 99392 1
CDS - ZP_05400241.1 CdifQCD-2_020200003847 putative stage IV sporulation protein 99604 100611 -1
CDS - ZP_05400242.1 CdifQCD-2_020200003852 putative N-acetylmuramoyl-L-alanine amidase 100839 101723 1
CDS - ZP_05400243.1 CdifQCD-2_020200003857 ABC transporter, ATP-binding protein 101926 103476 1
CDS - ZP_05400244.1 CdifQCD-2_020200003862 hypothetical protein 103504 104139 1
CDS - ZP_05400245.1 CdifQCD-2_020200003867 putative metal-binding protein 104245 104505 -1
CDS - ZP_05400246.1 CdifQCD-2_020200003872 putative ATP/GTP-binding protein 104722 106005 1
CDS - ZP_05400247.1 CdifQCD-2_020200003877 hypothetical protein 106013 106690 1
CDS - ZP_05400248.1 CdifQCD-2_020200003882 NUDIX family hydrolase 106777 107220 1
CDS - ZP_05400249.1 CdifQCD-2_020200003887 hypothetical protein 107529 108173 1
CDS - ZP_05400250.1 CdifQCD-2_020200003892 hypothetical protein 108260 108637 -1
CDS - ZP_05400251.1 CdifQCD-2_020200003897 hypothetical protein 108637 109023 -1
CDS - ZP_05400252.1 CdifQCD-2_020200003902 NH3-dependent NAD(+) synthetase 109202 109957 1
CDS - ZP_05400253.1 CdifQCD-2_020200003907 hypothetical protein 110040 110759 1
CDS - ZP_05400254.1 CdifQCD-2_020200003912 3-hydroxybutyryl-CoA dehydratase (crotonase) 111503 112297 1