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Clostridium difficile QCD-23m63, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05402435.1 CdifQCD-2_020200015326 putative glutamine amidotransferase 67 390 -1
CDS - ZP_05402436.1 CdifQCD-2_020200015331 putative sigma-54-dependent transcriptional regulator 643 2652 -1
CDS - ZP_05402437.1 CdifQCD-2_020200015336 hypothetical protein 2649 2801 -1
CDS - ZP_05402438.1 CdifQCD-2_020200015341 6-phospho-beta-glucosidase 3088 4521 -1
CDS - ZP_05402439.1 CdifQCD-2_020200015346 6-phospho-beta-glucosidase 4537 5961 -1
CDS - ZP_05402440.1 CdifQCD-2_020200015351 PTS system, IIABC component 6048 7964 -1
CDS - ZP_05402441.1 CdifQCD-2_020200015356 transcription antiterminator 8038 8898 -1
CDS - ZP_05402442.1 CdifQCD-2_020200015361 putative amidohydrolase 9249 10436 -1
CDS - ZP_05402443.1 CdifQCD-2_020200015366 putative C4-dicarboxylate anaerobic carrier 10450 11841 -1
CDS - ZP_05402444.1 CdifQCD-2_020200015371 PTS system, IIBC component 12437 14089 -1
CDS - ZP_05402445.1 CdifQCD-2_020200015376 putative dipeptidase 14109 15512 -1
CDS - ZP_05402446.1 CdifQCD-2_020200015391 ABC transporter, permease/ATP-binding protein 18929 20677 -1
CDS - ZP_05402447.1 CdifQCD-2_020200015396 ABC transporter, ATP-binding protein 20705 21370 -1
CDS - ZP_05402448.1 CdifQCD-2_020200015401 putative serine protease 21330 22385 -1
CDS - ZP_05402449.1 CdifQCD-2_020200015406 radical SAM domain protein 22411 23427 -1
CDS - ZP_05402450.1 CdifQCD-2_020200015411 radical SAM domain protein 23421 24680 -1
CDS - ZP_05402451.1 CdifQCD-2_020200015416 hypothetical protein 24753 24926 -1
CDS - ZP_05402452.1 CdifQCD-2_020200015421 sensor histidine kinase VirS 25020 26312 -1
CDS - ZP_05402453.1 CdifQCD-2_020200015426 two-component response regulator 26315 27016 -1
CDS - ZP_05402454.1 CdifQCD-2_020200015431 putative PTS syste, IIA component 27512 28003 -1
CDS - ZP_05402455.1 CdifQCD-2_020200015436 putative hydrolase 28029 28841 -1
CDS - ZP_05402456.1 CdifQCD-2_020200015441 alcohol dehydrogenase 28854 30005 -1
CDS - ZP_05402457.1 CdifQCD-2_020200015446 putative phopho-sugar aldolase 30276 30917 1
CDS - ZP_05402458.1 CdifQCD-2_020200015451 putative transcription antiterminator 30943 32487 1
CDS - ZP_05402459.1 CdifQCD-2_020200015456 hypothetical protein 32671 33297 -1
CDS - ZP_05402460.1 CdifQCD-2_020200015461 putative pentose-5-phosphate 3-epimerase 33432 34148 -1
CDS - ZP_05402461.1 CdifQCD-2_020200015466 6-phosphofructokinase 34556 35770 1
CDS - ZP_05402462.1 CdifQCD-2_020200015471 hypothetical protein 36383 37708 1
CDS - ZP_05402463.1 CdifQCD-2_020200015476 putative amidohydrolase 38085 39464 -1
CDS - ZP_05402464.1 CdifQCD-2_020200015481 hypothetical protein 39495 40703 -1
CDS - ZP_05402465.1 CdifQCD-2_020200015486 hypothetical protein 41891 42328 -1
CDS - ZP_05402466.1 CdifQCD-2_020200015491 nitroreductase 42472 42999 1
CDS - ZP_05402467.1 CdifQCD-2_020200015496 6-phospho-beta-glucosidase BglA 43278 44720 -1
CDS - ZP_05402468.1 CdifQCD-2_020200015501 PTS system, beta-glucoside-specific IIABC component 44740 46611 -1
CDS - ZP_05402469.1 CdifQCD-2_020200015506 putative beta-glucoside bgl operon transcription antiterminator 46601 47461 -1
CDS - ZP_05402470.1 CdifQCD-2_020200015511 ABC transporter ATP-binding protein 47724 48392 -1
CDS - ZP_05402471.1 CdifQCD-2_020200015516 hypothetical protein 48466 51033 -1
CDS - ZP_05402472.1 CdifQCD-2_020200015521 sensor histidine kinase VirS 51210 52547 -1
CDS - ZP_05402473.1 CdifQCD-2_020200015526 two-component response regulator 52541 53251 -1
CDS - ZP_05402474.1 CdifQCD-2_020200015531 hypothetical protein 53744 54148 -1
CDS - ZP_05402475.1 CdifQCD-2_020200015536 putative glycosyltransferase 54340 55527 -1
CDS - ZP_05402476.1 CdifQCD-2_020200015541 putative transcriptional regulator 55559 55984 -1
CDS - ZP_05402477.1 CdifQCD-2_020200015546 hypothetical protein 56422 58371 -1
CDS - ZP_05402478.1 CdifQCD-2_020200015551 nitrate/nitrite transporter 58343 59641 -1
CDS - ZP_05402479.1 CdifQCD-2_020200015556 PadR-like family transcriptional regulator 59892 60449 1
CDS - ZP_05402480.1 CdifQCD-2_020200015561 putative flavodoxin 60873 61622 1
CDS - ZP_05402481.1 CdifQCD-2_020200015566 transcription regulator ArsR 61782 62147 -1
CDS - ZP_05402482.1 CdifQCD-2_020200015571 putative nitroreductase 62163 62939 -1
CDS - ZP_05402483.1 CdifQCD-2_020200015576 6-phospho-beta-glucosidase 63358 64785 -1
CDS - ZP_05402484.1 CdifQCD-2_020200015581 PTS system, IIABC component 64846 66774 -1
CDS - ZP_05402485.1 CdifQCD-2_020200015586 transcription antiterminator 66919 67761 -1
CDS - ZP_05402486.1 CdifQCD-2_020200015591 AraC family transcription regulator 67924 68079 -1
CDS - ZP_05402487.1 CdifQCD-2_020200015596 PTS system, IIA component 68179 68628 -1
CDS - ZP_05402488.1 CdifQCD-2_020200015601 transcription antiterminator 68618 70525 -1
CDS - ZP_05402489.1 CdifQCD-2_020200015606 PTS system, IIABC component 70792 72687 -1
CDS - ZP_05402490.1 CdifQCD-2_020200015611 hypothetical protein 72723 73601 -1
CDS - ZP_05402491.1 CdifQCD-2_020200015616 ABC transporter permease 74153 75868 -1
CDS - ZP_05402492.1 CdifQCD-2_020200015621 ABC transporter ATP-binding protein 75849 76841 -1
CDS - ZP_05402493.1 CdifQCD-2_020200015626 hypothetical protein 76860 77717 -1
CDS - ZP_05402494.1 CdifQCD-2_020200015631 extracellular solute-binding protein 77995 79038 -1
CDS - ZP_05402495.1 CdifQCD-2_020200015636 6-phospho-beta-glucosidase 80004 81437 -1
CDS - ZP_05402496.1 CdifQCD-2_020200015641 PTS system, IIABC component 81460 83301 -1
CDS - ZP_05402497.1 CdifQCD-2_020200015646 transcription antiterminator 83427 84260 -1
CDS - ZP_05402498.1 CdifQCD-2_020200015651 hypothetical protein 84863 84982 -1
CDS - ZP_05402499.1 CdifQCD-2_020200015656 putative transcriptional regulator 85298 85510 -1
CDS - ZP_05402500.1 CdifQCD-2_020200015661 hypothetical protein 85511 85927 -1
CDS - ZP_05402501.1 CdifQCD-2_020200015666 hypothetical protein 86127 86249 -1
CDS - ZP_05402502.1 CdifQCD-2_020200015671 hypothetical protein 87235 87864 -1
CDS - ZP_05402503.1 CdifQCD-2_020200015676 putative transcriptional regulator 87943 88905 -1
CDS - ZP_05402504.1 CdifQCD-2_020200015681 hypothetical protein 89954 90061 -1
CDS - ZP_05402505.1 CdifQCD-2_020200015686 putative serine-aspartate-rich surface anchored fibrinogen-binding protein 90630 94043 -1
CDS - ZP_05402506.1 CdifQCD-2_020200015691 putative sortase B 94313 94726 1
CDS - ZP_05402507.1 CdifQCD-2_020200015696 phage integrase 95046 95846 1
CDS - ZP_05402508.1 CdifQCD-2_020200015701 hypothetical protein 96346 96945 -1
CDS - ZP_05402509.1 CdifQCD-2_020200015706 hypothetical protein 96971 97270 -1
CDS - ZP_05402510.1 CdifQCD-2_020200015711 hypothetical protein 97298 97549 -1
CDS - ZP_05402511.1 CdifQCD-2_020200015716 hypothetical protein 97764 99695 -1
CDS smpB ZP_05402512.1 CdifQCD-2_020200015721 SsrA-binding protein 100277 100732 -1
CDS - ZP_05402513.1 CdifQCD-2_020200015726 hypothetical protein 101323 102150 1
CDS - ZP_05402514.1 CdifQCD-2_020200015731 putative acetyltransferase 103162 103626 1
CDS - ZP_05402515.1 CdifQCD-2_020200015736 putative ABC transporter, permease protein 103973 104173 -1
CDS - ZP_05402516.1 CdifQCD-2_020200015741 putative ABC transporter, permease permease 104385 104558 -1
CDS - ZP_05402517.1 CdifQCD-2_020200015746 hypothetical protein 104585 105076 -1
CDS - ZP_05402518.1 CdifQCD-2_020200015751 ribonuclease R 106215 108350 -1
CDS - ZP_05402519.1 CdifQCD-2_020200015756 hypothetical protein 108951 109565 1
CDS - ZP_05402520.1 CdifQCD-2_020200015761 putative transcriptional regulator 109583 109945 1
CDS - ZP_05402521.1 CdifQCD-2_020200015766 putative phosphatidylethanolamine-binding regulatory protein 110051 110548 1
CDS - ZP_05402522.1 CdifQCD-2_020200015771 hypothetical protein 110973 111371 1
CDS - ZP_05402523.1 CdifQCD-2_020200015776 putative transporter 111359 112297 1
CDS - ZP_05402524.1 CdifQCD-2_020200015781 putative subunit of preprotein translocase 112657 112881 -1
CDS - ZP_05402525.1 CdifQCD-2_020200015786 hypothetical protein 113024 113245 -1
CDS - ZP_05402526.1 CdifQCD-2_020200015791 MarR family transcriptional regulator 113317 113553 1
CDS - ZP_05402527.1 CdifQCD-2_020200015796 enolase 113842 115134 -1
CDS - ZP_05402528.1 CdifQCD-2_020200015801 phosphoglyceromutase 115722 117251 -1
CDS tpiA ZP_05402529.1 CdifQCD-2_020200015806 triosephosphate isomerase 117263 118006 -1
CDS pgk ZP_05402530.1 CdifQCD-2_020200015811 phosphoglycerate kinase 118032 119234 -1
CDS - ZP_05402531.1 CdifQCD-2_020200015816 glyceraldehyde-3-phosphate dehydrogenase 2 119456 120463 -1
CDS - ZP_05402532.1 CdifQCD-2_020200015821 central glycolytic genes regulator 120523 121545 -1
CDS - ZP_05402533.1 CdifQCD-2_020200015826 RNA polymerase sigma-54 factor 122291 123637 -1
CDS - ZP_05402534.1 CdifQCD-2_020200015831 xanthine dehydrogenase, molybdenum binding and iron-sulfur binding subunits 123789 126350 -1