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Clostridium difficile QCD-23m63, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05402694.1 CdifQCD-2_020200016666 hypothetical protein 1 504 -1
CDS - ZP_05402695.1 CdifQCD-2_020200016671 putative glycosyl transferase 583 1659 -1
CDS - ZP_05402696.1 CdifQCD-2_020200016676 ATP-dependent Clp protease proteolytic subunit 1962 2546 -1
CDS - ZP_05402697.1 CdifQCD-2_020200016681 AraC family transcription regulator 2543 3025 -1
CDS - ZP_05402698.1 CdifQCD-2_020200016686 GntR family transcriptional regulator 3224 4639 -1
CDS - ZP_05402699.1 CdifQCD-2_020200016691 hypothetical protein 4754 5422 1
CDS - ZP_05402700.1 CdifQCD-2_020200016696 putative nitroreductase 5613 6131 -1
CDS - ZP_05402701.1 CdifQCD-2_020200016701 putative transcriptional regulator 6283 6606 1
CDS - ZP_05402702.1 CdifQCD-2_020200016706 putative protease 6611 6937 -1
CDS - ZP_05402703.1 CdifQCD-2_020200016711 hypothetical protein 7897 7992 1
CDS - ZP_05402704.1 CdifQCD-2_020200016716 ABC transporter, ATP-binding protein 8219 9757 1
CDS - ZP_05402705.1 CdifQCD-2_020200016721 two-component system response regulator 10034 10864 -1
CDS - ZP_05402706.1 CdifQCD-2_020200016726 putative multidrug efflux protein 11197 12576 -1
CDS - ZP_05402707.1 CdifQCD-2_020200016731 ABC transporter, permease protein 12859 13650 -1
CDS - ZP_05402708.1 CdifQCD-2_020200016736 ABC transporter, permease protein 13650 14504 -1
CDS - ZP_05402709.1 CdifQCD-2_020200016741 ABC transporter, ATP-binding protein 14491 15486 -1
CDS - ZP_05402710.1 CdifQCD-2_020200016746 putative signaling protein 16189 17145 1
CDS - ZP_05402711.1 CdifQCD-2_020200016751 hypothetical protein 17722 17883 -1
CDS - ZP_05402712.1 CdifQCD-2_020200016756 hypothetical protein 17913 18419 -1
CDS - ZP_05402713.1 CdifQCD-2_020200016761 putative GTPase 18962 20029 -1
CDS - ZP_05402714.1 CdifQCD-2_020200016766 hypothetical protein 20026 20427 -1
CDS - ZP_05402715.1 CdifQCD-2_020200016771 hypothetical protein 21370 21546 1
CDS - ZP_05402716.1 CdifQCD-2_020200016776 hypothetical protein 21956 22093 1
CDS - ZP_05402717.1 CdifQCD-2_020200016781 hypothetical protein 22097 22345 1
CDS - ZP_05402718.1 CdifQCD-2_020200016786 hypothetical protein 22287 22595 1
CDS - ZP_05402719.1 CdifQCD-2_020200016791 putative recombinase 23088 24866 -1
CDS - ZP_05402720.1 CdifQCD-2_020200016796 hypothetical protein 25538 25948 -1
CDS - ZP_05402721.1 CdifQCD-2_020200016801 hypothetical protein 26200 26784 -1
CDS - ZP_05402722.1 CdifQCD-2_020200016806 ABC-type cobalt transport system permease component 26781 27500 -1
CDS - ZP_05402723.1 CdifQCD-2_020200016811 ABC transporter, ATP-binding protein 27490 29007 -1
CDS - ZP_05402724.1 CdifQCD-2_020200016816 ABC transporter, ATP-binding/permease protein 29010 30719 -1
CDS - ZP_05402725.1 CdifQCD-2_020200016821 ABC transporter, ATP-binding/permease protein 30712 32451 -1
CDS - ZP_05402726.1 CdifQCD-2_020200016826 TetR family transcriptional regulator 32555 33127 -1
CDS - ZP_05402727.1 CdifQCD-2_020200016831 hypothetical protein 33427 33786 1
CDS - ZP_05402728.1 CdifQCD-2_020200016836 relaxase/mobilisation protein 33787 35118 1
CDS - ZP_05402729.1 CdifQCD-2_020200016841 dead/deah box helicase domain-containing protein 35135 37672 -1
CDS - ZP_05402730.1 CdifQCD-2_020200016846 hypothetical protein 37690 38964 -1
CDS - ZP_05402731.1 CdifQCD-2_020200016851 hypothetical protein 38979 41897 -1
CDS - ZP_05402732.1 CdifQCD-2_020200016856 type I restriction-modification system 41887 43248 -1
CDS - ZP_05402733.1 CdifQCD-2_020200016861 type I restriction-modification system specificity subunit 43241 45418 -1
CDS - ZP_05402734.1 CdifQCD-2_020200016866 DNA-binding protein 45419 45637 -1
CDS - ZP_05402735.1 CdifQCD-2_020200016871 hypothetical protein 45767 46426 -1
CDS - ZP_05402736.1 CdifQCD-2_020200016876 putative conjugative transposon DNA recombination protein 46481 55468 -1
CDS - ZP_05402737.1 CdifQCD-2_020200016881 conjugative transposon O-methyltransferase 55577 56383 -1
CDS - ZP_05402738.1 CdifQCD-2_020200016896 putative conjugative transposon regulatory protein 57550 57735 -1
CDS - ZP_05402739.1 CdifQCD-2_020200016901 conjugative transposon DNA topoisomerase 57820 59526 -1
CDS - ZP_05402740.1 CdifQCD-2_020200016906 putative cell surface protein 59623 61197 -1
CDS - ZP_05402741.1 CdifQCD-2_020200016911 hypothetical protein 61178 61411 -1
CDS - ZP_05402742.1 CdifQCD-2_020200016926 putative conjugal transfer protein 63577 66006 -1
CDS - ZP_05402743.1 CdifQCD-2_020200016931 putative conjugative transposon membrane protein 65918 66307 -1
CDS - ZP_05402744.1 CdifQCD-2_020200016936 putative conjugative transposon membrane exported protein 66311 66574 -1
CDS - ZP_05402745.1 CdifQCD-2_020200016941 putative conjugative transposon membrane protein 66592 67455 -1
CDS - ZP_05402746.1 CdifQCD-2_020200016946 conjugative transposon membrane protein 67475 67690 -1
CDS - ZP_05402747.1 CdifQCD-2_020200016951 putative conjugal transfer protein (putative single-stranded DNA binding protein) 67694 68005 -1
CDS - ZP_05402748.1 CdifQCD-2_020200016956 AraC family transcription regulator 68225 69091 -1
CDS - ZP_05402749.1 CdifQCD-2_020200016961 putative conjugal transfer protein 69255 71036 -1
CDS - ZP_05402750.1 CdifQCD-2_020200016966 hypothetical protein 71033 71518 -1
CDS - ZP_05402751.1 CdifQCD-2_020200016981 putative replication initiation protein 72364 73143 -1
CDS - ZP_05402752.1 CdifQCD-2_020200016986 membrane protein 73231 73515 -1
CDS - ZP_05402753.1 CdifQCD-2_020200016991 hypothetical protein 73519 73677 -1
CDS - ZP_05402754.1 CdifQCD-2_020200016996 putative RNA methyltransferase 73677 75038 -1
CDS - ZP_05402755.1 CdifQCD-2_020200017001 pyruvate kinase 75212 76972 -1
CDS - ZP_05402756.1 CdifQCD-2_020200017006 6-phosphofructokinase 77024 77983 -1
CDS dnaE ZP_05402757.1 CdifQCD-2_020200017011 DNA polymerase III DnaE 78192 81761 -1
CDS - ZP_05402758.1 CdifQCD-2_020200017016 hypothetical protein 81906 82859 -1
CDS - ZP_05402759.1 CdifQCD-2_020200017021 putative DNA repair protein (nucleotide pyrophosphatase) 82876 83301 -1
CDS - ZP_05402760.1 CdifQCD-2_020200017026 hypothetical protein 83370 84476 -1
CDS - ZP_05402761.1 CdifQCD-2_020200017031 hypothetical protein 84488 85345 -1
CDS - ZP_05402762.1 CdifQCD-2_020200017036 putative phosphoesterase 85376 86089 -1
CDS murB ZP_05402763.1 CdifQCD-2_020200017041 UDP-N-acetylenolpyruvoylglucosamine reductase 86093 87007 -1
CDS - ZP_05402764.1 CdifQCD-2_020200017046 putative formate/nitrite transporter 87279 88049 -1
CDS - ZP_05402765.1 CdifQCD-2_020200017051 putative cardiolipin synthetase 88368 88811 1
CDS - ZP_05402766.1 CdifQCD-2_020200017056 putative cardiolipin synthetase 88789 89850 1
CDS - ZP_05402767.1 CdifQCD-2_020200017061 putative iron-only hydrogenase,electron-transferring subunit 90167 90664 1
CDS - ZP_05402768.1 CdifQCD-2_020200017066 putative iron-only hydrogenase,electron-transferring subunit 90681 92567 1
CDS - ZP_05402769.1 CdifQCD-2_020200017071 putative iron-only hydrogenase, catalytic subunit 92590 94371 1
CDS - ZP_05402770.1 CdifQCD-2_020200017076 putative DNA mismatch repair protein 94511 96307 -1
CDS - ZP_05402771.1 CdifQCD-2_020200017081 HPr kinase/phosphorylase 96521 97450 -1
CDS uvrC ZP_05402772.1 CdifQCD-2_020200017086 excinuclease ABC subunit C 97450 99267 -1
CDS - ZP_05402773.1 CdifQCD-2_020200017091 excinuclease ABC subunit A 99530 102355 -1
CDS - ZP_05402774.1 CdifQCD-2_020200017096 excinuclease ABC subunit B 102374 104344 -1
CDS - ZP_05402775.1 CdifQCD-2_020200017101 putative nucleotide pyrophosphatase 104530 105792 -1
CDS - ZP_05402776.1 CdifQCD-2_020200017106 ABC transporter, solute-binding protein 105855 107159 -1
CDS - ZP_05402777.1 CdifQCD-2_020200017111 ABC transporter, permease protein 107190 108050 -1
CDS - ZP_05402778.1 CdifQCD-2_020200017116 ABC transporter, permease protein 108094 108963 -1
CDS - ZP_05402779.1 CdifQCD-2_020200017121 ABC transporter, ATP-binding protein 108947 110017 -1