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Clostridium difficile QCD-23m63, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS carB ZP_05402953.1 CdifQCD-2_020200018001 carbamoyl phosphate synthase large subunit 1 2322 -1
CDS - ZP_05402954.1 CdifQCD-2_020200018006 carbamoyl phosphate synthase small subunit 2515 3564 -1
CDS carB ZP_05402955.1 CdifQCD-2_020200018011 carbamoyl phosphate synthase large subunit 3821 7027 -1
CDS - ZP_05402956.1 CdifQCD-2_020200018016 carbamoyl phosphate synthase small subunit 7080 8123 -1
CDS - ZP_05402957.1 CdifQCD-2_020200018021 orotidine 5'-phosphate decarboxylase 8149 8865 -1
CDS - ZP_05402958.1 CdifQCD-2_020200018026 hypothetical protein 9241 9876 -1
CDS - ZP_05402959.1 CdifQCD-2_020200018031 hypothetical protein 9900 10814 -1
CDS - ZP_05402960.1 CdifQCD-2_020200018036 hypothetical protein 10815 10928 -1
CDS - ZP_05402961.1 CdifQCD-2_020200018041 aminopeptidase 11416 12645 1
CDS - ZP_05402962.1 CdifQCD-2_020200018056 hypothetical protein 15204 15929 -1
CDS - ZP_05402963.1 CdifQCD-2_020200018061 S-ribosylhomocysteinase 15919 16374 -1
CDS - ZP_05402964.1 CdifQCD-2_020200018066 two-component sensor histidine kinase 16656 17837 -1
CDS - ZP_05402965.1 CdifQCD-2_020200018071 two-component response regulator 17827 18519 -1
CDS - ZP_05402966.1 CdifQCD-2_020200018076 D-alanyl-D-alanine carboxypeptidase 18653 19369 -1
CDS - ZP_05402967.1 CdifQCD-2_020200018081 putative ATPase 19495 20229 1
CDS - ZP_05402968.1 CdifQCD-2_020200018086 putative exported phosphoesterase 20514 21365 -1
CDS - ZP_05402969.1 CdifQCD-2_020200018091 hypothetical protein 21391 22329 -1
CDS - ZP_05402970.1 CdifQCD-2_020200018096 putative phosphatase 22432 23082 -1
CDS - ZP_05402971.1 CdifQCD-2_020200018101 ferredoxin 23232 23420 -1
CDS - ZP_05402972.1 CdifQCD-2_020200018106 putative amidohydrolase 23527 24711 -1
CDS - ZP_05402973.1 CdifQCD-2_020200018111 hypothetical protein 24848 25765 -1
CDS - ZP_05402974.1 CdifQCD-2_020200018116 ABC transporter, ATP-binding protein 25787 26515 -1
CDS - ZP_05402975.1 CdifQCD-2_020200018121 hypothetical protein 26711 26911 -1
CDS - ZP_05402976.1 CdifQCD-2_020200018126 putative glyoxalase 27036 27416 -1
CDS - ZP_05402977.1 CdifQCD-2_020200018131 mate efflux family protein 27689 29047 -1
CDS - ZP_05402978.1 CdifQCD-2_020200018136 hypothetical protein 29331 29783 1
CDS - ZP_05402979.1 CdifQCD-2_020200018151 MerR family transcriptional regulator 30962 31774 -1
CDS - ZP_05402980.1 CdifQCD-2_020200018156 potassium/proton antiporter 31850 33268 -1
CDS - ZP_05402981.1 CdifQCD-2_020200018171 hypothetical protein 34931 35308 1
CDS - ZP_05402982.1 CdifQCD-2_020200018176 putative acetyltransferase 35465 35914 -1
CDS - ZP_05402983.1 CdifQCD-2_020200018181 hypothetical protein 36090 36494 -1
CDS - ZP_05402984.1 CdifQCD-2_020200018186 hypothetical protein 36607 37473 -1
CDS - ZP_05402985.1 CdifQCD-2_020200018191 putative phosphonoacetate hydrolase 38045 38389 -1
CDS - ZP_05402986.1 CdifQCD-2_020200018196 putative ABC transporter, ATP-binding protein 38578 39195 -1
CDS - ZP_05402987.1 CdifQCD-2_020200018201 putative ABC transporter, permease protein 39200 41368 -1
CDS - ZP_05402988.1 CdifQCD-2_020200018206 putative signaling protein 41711 44218 -1
CDS - ZP_05402989.1 CdifQCD-2_020200018211 transcriptional regulator, LysR family protein 44997 45875 -1
CDS - ZP_05402990.1 CdifQCD-2_020200018216 thermostable carboxypeptidase 1 46060 47250 1
CDS - ZP_05402991.1 CdifQCD-2_020200018221 hypothetical protein 47252 48529 1
CDS - ZP_05402992.1 CdifQCD-2_020200018226 2-keto-3-deoxy-6-phospho-gluconate aldolase 48715 49347 -1
CDS - ZP_05402993.1 CdifQCD-2_020200018231 putative dihydrodipicolinate synthase 49476 50393 -1
CDS - ZP_05402994.1 CdifQCD-2_020200018236 putative sugar-phosphate isomerase 50365 50964 -1
CDS - ZP_05402995.1 CdifQCD-2_020200018241 ascorbate-specific PTS system enzyme IIC 51021 52292 -1
CDS - ZP_05402996.1 CdifQCD-2_020200018246 putative PTS system, IIB component 52319 52606 -1
CDS - ZP_05402997.1 CdifQCD-2_020200018251 putative transcription antiterminator 52621 54702 -1
CDS - ZP_05402998.1 CdifQCD-2_020200018256 putative isochorismatase 55190 55711 -1
CDS - ZP_05402999.1 CdifQCD-2_020200018261 hypothetical protein 56337 57185 -1
CDS - ZP_05403000.1 CdifQCD-2_020200018266 hypothetical protein 57223 57735 -1
CDS - ZP_05403001.1 CdifQCD-2_020200018271 putative phage-related protein 57728 57952 -1
CDS - ZP_05403002.1 CdifQCD-2_020200018276 hypothetical protein 58005 58958 -1
CDS - ZP_05403003.1 CdifQCD-2_020200018281 hypothetical protein 58986 60374 -1
CDS - ZP_05403004.1 CdifQCD-2_020200018286 LysR family transcriptional regulator 60647 61528 1
CDS - ZP_05403005.1 CdifQCD-2_020200018291 carbohydrate kinase 61716 62708 -1
CDS - ZP_05403006.1 CdifQCD-2_020200018296 hypothetical protein 62713 63453 -1
CDS - ZP_05403007.1 CdifQCD-2_020200018301 putative selenocysteine synthase 63518 64627 -1
CDS - ZP_05403008.1 CdifQCD-2_020200018306 dihydroorotase 64645 65778 -1
CDS - ZP_05403009.1 CdifQCD-2_020200018311 hypothetical protein 65780 66874 -1
CDS - ZP_05403010.1 CdifQCD-2_020200018316 PTS system, IIC component 67012 68313 -1
CDS - ZP_05403011.1 CdifQCD-2_020200018321 GntR family transcriptional regulator 68512 69213 -1
CDS - ZP_05403012.1 CdifQCD-2_020200018326 PTS system, IIA component 69425 69742 -1
CDS - ZP_05403013.1 CdifQCD-2_020200018331 PTS system, IIB component 69790 70101 -1
CDS - ZP_05403014.1 CdifQCD-2_020200018336 hypothetical protein 70250 70729 -1
CDS - ZP_05403015.1 CdifQCD-2_020200018341 putative signaling protein 70797 72899 -1
CDS - ZP_05403016.1 CdifQCD-2_020200018346 putative metallo-beta-lactamase superfamily protein 72912 73709 -1
CDS - ZP_05403017.1 CdifQCD-2_020200018351 putative peptidase 73794 75257 -1
CDS - ZP_05403018.1 CdifQCD-2_020200018356 hypothetical protein 75382 76440 1
CDS - ZP_05403019.1 CdifQCD-2_020200018361 DNA replication protein DnaC 76449 77441 1
tRNA - - CdifQCD-2_020200t18573 tRNA-Thr 77821 77895 -1
tRNA - - CdifQCD-2_020200t18575 tRNA-Val 77929 78004 -1
tRNA - - CdifQCD-2_020200t18577 tRNA-Glu 78009 78083 -1
tRNA - - CdifQCD-2_020200t18579 tRNA-Lys 78090 78165 -1
CDS - ZP_05403020.1 CdifQCD-2_020200018366 adenylosuccinate synthetase 78497 79786 -1
CDS - ZP_05403021.1 CdifQCD-2_020200018371 hypothetical protein 79868 80176 -1
CDS - ZP_05403022.1 CdifQCD-2_020200018376 replicative DNA helicase 80381 81709 -1
CDS - ZP_05403023.1 CdifQCD-2_020200018381 50S ribosomal protein L9 81728 82177 -1
CDS - ZP_05403024.1 CdifQCD-2_020200018386 putative RNA/single-stranded DNA exonuclease 82178 84172 -1
CDS - ZP_05403025.1 CdifQCD-2_020200018391 hypothetical protein 84183 85139 -1
CDS - ZP_05403026.1 CdifQCD-2_020200018396 hypothetical protein 85147 85467 -1
CDS - ZP_05403027.1 CdifQCD-2_020200018401 30S ribosomal protein S18 85610 85837 -1
CDS - ZP_05403028.1 CdifQCD-2_020200018406 single-strand binding protein 85856 86290 -1
CDS - ZP_05403029.1 CdifQCD-2_020200018411 30S ribosomal protein S6 86326 86604 -1
CDS - ZP_05403030.1 CdifQCD-2_020200018416 putative amino acid aminotransferase 86818 88014 -1
CDS - ZP_05403031.1 CdifQCD-2_020200018421 hypothetical protein 88117 88302 -1
CDS - ZP_05403032.1 CdifQCD-2_020200018426 hypothetical protein 88317 88580 -1
CDS - ZP_05403033.1 CdifQCD-2_020200018431 hypothetical protein 88653 89255 -1
CDS - ZP_05403034.1 CdifQCD-2_020200018436 putative transcriptional regulator 89360 90598 -1
CDS - ZP_05403035.1 CdifQCD-2_020200018441 hypothetical protein 90913 91488 1
CDS - ZP_05403036.1 CdifQCD-2_020200018446 putative selenocysteine lyase 91624 92766 -1
CDS - ZP_05403037.1 CdifQCD-2_020200018451 stage 0 sporulation protein J 92799 93662 -1
CDS - ZP_05403038.1 CdifQCD-2_020200018456 sporulation initiation inhibitor 93664 94437 -1
CDS - ZP_05403039.1 CdifQCD-2_020200018461 putative stage 0 sporulation protein 94572 95357 -1
CDS - ZP_05403040.1 CdifQCD-2_020200018466 16S rRNA methyltransferase GidB 95520 96239 -1
CDS - ZP_05403041.1 CdifQCD-2_020200018471 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 96232 98127 -1
CDS trmE ZP_05403042.1 CdifQCD-2_020200018476 tRNA modification GTPase TrmE 98222 99601 -1
CDS - ZP_05403043.1 CdifQCD-2_020200018481 SpoIIIJ-associated protein 99713 100342 -1
CDS - ZP_05403044.1 CdifQCD-2_020200018486 putative sporulation membrane protein 100311 101018 -1
CDS - ZP_05403045.1 CdifQCD-2_020200018491 hypothetical protein 101050 101301 -1
CDS rnpA ZP_05403046.1 CdifQCD-2_020200018496 ribonuclease P 101333 101677 -1
CDS - ZP_05403047.1 CdifQCD-2_020200018501 50S ribosomal protein L34 101755 101892 -1
CDS - ZP_05403048.1 CdifQCD-2_020200018506 chromosomal replication initiator protein 102551 103870 1