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Clostridium difficile R20291, complete genome. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS rsbW YP_003216509.1 CDR20291_3551 anti-sigma-B factor (serine-protein kinase) 9450 9857 1
CDS sigB YP_003216510.1 CDR20291_3552 RNA polymerase sigma-B factor 9857 10630 1
rRNA 16SrRNA - CDR20291_r27 16S ribosomal RNA 10716 12345 1
rRNA 23SrRNA - CDR20291_r18 23S ribosomal RNA 12598 15548 1
rRNA 5SrRNA - CDR20291_r19 5S ribosomal RNA 15610 15726 1
CDS - YP_003216511.1 CDR20291_0001 putative small-molecule-binding protein 15853 16362 1
CDS - YP_003216512.1 CDR20291_0002 putative mechanosensitive ion channel protein 16374 17255 1
CDS serS1 YP_003216513.1 CDR20291_0003 seryl-tRNA synthetase 17713 18984 1
CDS - YP_003216514.1 CDR20291_0004 putative cytosine/adenosine deaminase 19304 19759 1
CDS dnaH YP_003216515.1 CDR20291_0005 DNA polymerase III subunit gamma/tau 20230 21867 1
CDS - YP_003216516.1 CDR20291_0006 hypothetical protein 21926 22276 1
CDS recD YP_003216517.1 CDR20291_0007 recombination protein 22289 22888 1
CDS - YP_003216518.1 CDR20291_0008 putative glycosyl transferase 23321 24526 -1
rRNA 16SrRNA - CDR20291_r01 16S ribosomal RNA 24945 26723 1
rRNA 23SrRNA - CDR20291_r02 23S ribosomal RNA 26820 29770 1
rRNA 5SrRNA - CDR20291_r03 5S ribosomal RNA 29899 30015 1
CDS - YP_003216519.1 CDR20291_0009 hypothetical protein 33930 34343 1
CDS pyc YP_003216520.1 CDR20291_0010 pyruvate carboxylase 34652 38083 1
CDS - YP_003216521.1 CDR20291_0011 putative translation elongation factor 38325 40253 1
CDS ctsR YP_003216522.1 CDR20291_0012 transcriptional regulator 40706 41170 1
CDS - YP_003216523.1 CDR20291_0013 putative DNA repair protein 41177 41671 1
CDS - YP_003216524.1 CDR20291_0014 putative ATP:guanido phosphotransferase 41687 42712 1
CDS clpC YP_003216525.1 CDR20291_0015 ATP-dependent Clp protease 42897 45146 1
CDS radA YP_003216526.1 CDR20291_0016 DNA repair protein 45326 46699 1
CDS - YP_003216527.1 CDR20291_0017 putative DNA-binding protein 46702 47772 1
CDS - YP_003216528.1 CDR20291_0018 hypothetical protein 47861 48955 1
CDS - YP_003216529.1 CDR20291_0019 hypothetical protein 49084 51261 1
CDS - YP_003216530.1 CDR20291_0020 AraC-family transcriptional regulator 51447 52292 -1
CDS - YP_003216531.1 CDR20291_0021 putative beta-glucosidase 52509 53675 1
CDS - YP_003216532.1 CDR20291_0022 putative beta-xylosidase 53697 55343 1
CDS - YP_003216533.1 CDR20291_0023 putative xylose transporter 55440 56813 1
CDS - YP_003216534.1 CDR20291_0024 transcriptional regulator 57258 58211 1
CDS acoA YP_003216535.1 CDR20291_0025 acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit 58243 59211 1
CDS acoB YP_003216536.1 CDR20291_0026 acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit 59236 60222 1
CDS acoC YP_003216537.1 CDR20291_0027 E2 component of acetoin dehydrogenase enzyme system (dihydrolipoamide acetyltransferase) 60235 61281 1
CDS acoL YP_003216538.1 CDR20291_0028 E3 component of acetoin dehydrogenase enzyme system (dihydrolipoyl dehydrogenase) 61448 63178 1
CDS - YP_003216539.1 CDR20291_0029 putative transcription antiterminator 63596 66544 1
CDS - YP_003216540.1 CDR20291_0030 PTS system, IIa component 66522 66986 1
CDS - YP_003216541.1 CDR20291_0031 PTS system, IIb component 67099 67401 1
CDS - YP_003216542.1 CDR20291_0032 PTS system, IIc component 67463 68827 1
CDS - YP_003216543.1 CDR20291_0033 hypothetical protein 68862 69335 1
CDS - YP_003216544.1 CDR20291_0034 putative sugar-phosphate aldolase 69507 70157 1
CDS - YP_003216545.1 CDR20291_0035 putative lipoate-protein ligase 70331 71263 1
CDS ispD YP_003216546.1 CDR20291_0036 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 71504 72250 1
CDS ispF YP_003216547.1 CDR20291_0037 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 72247 72732 1
CDS proS YP_003216548.1 CDR20291_0038 prolyl-tRNA synthetase 73099 74814 1
CDS - YP_003216549.1 CDR20291_0039 putative dual-specificity prolyl/cysteinyl-tRNA synthetase 74849 76381 1
CDS gltX YP_003216550.1 CDR20291_0040 glutamyl-tRNA synthetase 76821 78302 1
CDS cysS YP_003216551.1 CDR20291_0041 cysteinyl-tRNA synthetase 78817 80220 1
CDS - YP_003216552.1 CDR20291_0042 hypothetical protein 80223 80618 1
CDS - YP_003216553.1 CDR20291_0043 thymidylate synthase 81126 81956 1
CDS - YP_003216554.1 CDR20291_0044 dihydrofolate reductase region 81969 82463 1
CDS - YP_003216555.1 CDR20291_0045 hypothetical protein 82490 83866 1
CDS - YP_003216556.1 CDR20291_0046 thiamine biosynthesis protein thic 84193 84942 1
CDS - YP_003216557.1 CDR20291_0047 putative thymidylate synthase 85108 85410 1
CDS - YP_003216558.1 CDR20291_0048 putative tRNA/rRNA methyltransferase 85414 86160 1
CDS - YP_003216559.1 CDR20291_0049 hypothetical protein 86163 86690 1
CDS sigH YP_003216560.1 CDR20291_0050 RNA polymerase sigma-H factor 86740 87402 1
CDS - YP_003216561.1 CDR20291_0051 elongation factor TU 87476 88669 1
CDS rpmG YP_003216562.1 CDR20291_0052 50S ribosomal protein L33 88919 89068 1
CDS secE YP_003216563.1 CDR20291_0053 preprotein translocase SecE subunit 89094 89315 1
CDS nusG YP_003216564.1 CDR20291_0054 transcription antitermination protein 89335 89877 1
CDS rplK YP_003216565.1 CDR20291_0055 50S ribosomal protein L11 89913 90338 1
CDS rplA YP_003216566.1 CDR20291_0056 50S ribosomal protein L1 90408 91106 1
CDS rplJ YP_003216567.1 CDR20291_0057 50S ribosomal protein L10 91329 91835 1
CDS rplL YP_003216568.1 CDR20291_0058 50S ribosomal protein L7/L12 91893 92258 1
CDS - YP_003216569.1 CDR20291_0059 NADP-dependent 7-alpha-hydroxysteroid dehydrogenase 92650 93438 1
CDS rpoB YP_003216570.1 CDR20291_0060 DNA-directed RNA polymerase beta chain 93909 97625 1
CDS rpoC YP_003216571.1 CDR20291_0061 DNA-directed RNA polymerase beta' chain 97667 101152 1
CDS rpsL YP_003216572.1 CDR20291_0062 30S ribosomal protein S12 101438 101863 1
CDS rpsG YP_003216573.1 CDR20291_0063 30S ribosomal protein S7 101986 102456 1
CDS fusA YP_003216574.1 CDR20291_0064 translation elongation factor G 102505 104571 1
CDS - YP_003216575.1 CDR20291_0065 elongation factor TU 104662 105855 1
CDS rpsJ YP_003216576.1 CDR20291_0066 30S ribosomal protein S10 106228 106539 1
CDS rplC YP_003216577.1 CDR20291_0067 50S ribosomal protein L3 106631 107260 1
CDS rplD YP_003216578.1 CDR20291_0068 50S ribosomal protein L4 107260 107913 1
CDS rplW YP_003216579.1 CDR20291_0069 50S ribosomal protein L23 107913 108203 1
CDS rplB YP_003216580.1 CDR20291_0070 50S ribosomal protein L2 108233 109063 1
CDS rpsS YP_003216581.1 CDR20291_0071 30S ribosomal protein S19 109098 109379 1
CDS rplV YP_003216582.1 CDR20291_0072 50S ribosomal protein L22 109411 109746 1
CDS rpsC YP_003216583.1 CDR20291_0073 30S ribosomal protein S3 109769 110584 1
CDS rplP YP_003216584.1 CDR20291_0074 50S ribosomal protein L16 110620 111051 1
CDS rpmC YP_003216585.1 CDR20291_0075 50S ribosomal protein L29 111053 111256 1
CDS rpsQ YP_003216586.1 CDR20291_0076 30S ribosomal protein S17 111280 111534 1
CDS rplN YP_003216587.1 CDR20291_0077 50S ribosomal protein L14 111560 111928 1
CDS rplX YP_003216588.1 CDR20291_0078 50S ribosomal protein L24 111949 112257 1
CDS rplE YP_003216589.1 CDR20291_0079 50S ribosomal protein L5 112287 112829 1
CDS rpsN YP_003216590.1 CDR20291_0080 30S ribosomal protein S14 112847 113032 1
CDS rpsH YP_003216591.1 CDR20291_0081 30S ribosomal protein S8 113065 113463 1
CDS rplF YP_003216592.1 CDR20291_0082 50S ribosomal protein L6 113494 114036 1
CDS rplR YP_003216593.1 CDR20291_0083 50S ribosomal protein L18 114072 114440 1
CDS rpsE YP_003216594.1 CDR20291_0084 30S ribosomal protein S5 114461 114970 1
CDS rpmD YP_003216595.1 CDR20291_0085 50S ribosomal protein L30 114985 115170 1
CDS rplO YP_003216596.1 CDR20291_0086 50S ribosomal protein L15 115203 115646 1
CDS prlA YP_003216597.1 CDR20291_0087 preprotein translocase SecY subunit 115690 116958 1
CDS adk YP_003216598.1 CDR20291_0088 adenylate kinase 116960 117625 1
CDS map1 YP_003216599.1 CDR20291_0089 methionine aminopeptidase 117626 118372 1
CDS - YP_003216600.1 CDR20291_0090 putative ribosomal protein 118385 118663 1
CDS infA YP_003216601.1 CDR20291_0091 translation initiation factor IF-1 118701 118919 1
CDS rpmJ YP_003216602.1 CDR20291_0092 50S ribosomal protein L36 118955 119068 1