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Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - YP_001542003.1 Dshi_3792 extracellular solute-binding protein 167 1822 1
CDS - YP_001542004.1 Dshi_3793 binding-protein-dependent transport systems inner membrane component 1905 2858 1
CDS - YP_001542005.1 Dshi_3794 binding-protein-dependent transport systems inner membrane component 2862 3749 1
CDS - YP_001542006.1 Dshi_3795 oligopeptide/dipeptide ABC transporter, ATPase subunit 3746 4741 1
CDS - YP_001542007.1 Dshi_3796 oligopeptide/dipeptide ABC transporter, ATPase subunit 4738 5739 1
CDS - YP_001542008.1 Dshi_3797 Asp/Glu racemase 5736 6419 1
CDS - YP_001542009.1 Dshi_3798 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 6416 6958 -1
CDS - YP_001542010.1 Dshi_3799 HupE/UreJ protein 7084 7680 1
CDS - YP_001542011.1 Dshi_3800 hypothetical protein 7685 8299 1
CDS - YP_001542012.1 Dshi_3801 catalase/peroxidase HPI 8358 10535 -1
CDS - YP_001542013.1 Dshi_3802 LysR family transcriptional regulator 10649 11578 1
CDS - YP_001542014.1 Dshi_3803 hypothetical protein 11636 11827 1
CDS - YP_001542015.1 Dshi_3804 LuxR family transcriptional regulator 11802 12791 1
CDS - YP_001542016.1 Dshi_3805 putative monovalent cation/H+ antiporter subunit A 12918 15827 1
CDS - YP_001542017.1 Dshi_3806 putative monovalent cation/H+ antiporter subunit C 15829 16182 1
CDS - YP_001542018.1 Dshi_3807 putative monovalent cation/H+ antiporter subunit D 16179 17699 1
CDS - YP_001542019.1 Dshi_3808 putative monovalent cation/H+ antiporter subunit E 17704 18195 1
CDS - YP_001542020.1 Dshi_3809 multiple resistance and pH regulation protein F 18192 18461 1
CDS - YP_001542021.1 Dshi_3810 monovalent cation/proton antiporter, MnhG/PhaG subunit 18469 18858 1
CDS - YP_001542022.1 Dshi_3811 fumarylacetoacetase 18901 20142 -1
CDS - YP_001542023.1 Dshi_3812 homogentisate 1,2-dioxygenase 20139 21494 -1
CDS - YP_001542024.1 Dshi_3813 MarR family transcriptional regulator 21527 21970 -1
CDS - YP_001542025.1 Dshi_3814 beta-lactamase domain-containing protein 22097 23047 1
CDS - YP_001542026.1 Dshi_3815 FAD-dependent oxidoreductase 23077 24702 1
CDS - YP_001542027.1 Dshi_3816 hypothetical protein 24705 24890 1
CDS - YP_001542028.1 Dshi_3817 beta-ketoadipyl CoA thiolase 25016 26218 1
CDS paaA YP_001542029.1 Dshi_3818 phenylacetate-CoA oxygenase subunit PaaA 26236 27213 1
CDS paaB YP_001542030.1 Dshi_3819 phenylacetate-CoA oxygenase subunit PaaB 27210 27542 1
CDS - YP_001542031.1 Dshi_3820 phenylacetate-CoA oxygenase, PaaI subunit 27542 28309 1
CDS - YP_001542032.1 Dshi_3821 phenylacetate-CoA oxygenase, PaaJ subunit 28311 28769 1
CDS - YP_001542033.1 Dshi_3822 phenylacetate-CoA oxygenase/reductase, PaaK subunit 28782 29852 1
CDS - YP_001542034.1 Dshi_3823 TetR family transcriptional regulator 29860 30456 -1
CDS - YP_001542035.1 Dshi_3824 phenylacetate-CoA ligase 30459 31769 -1
CDS - YP_001542036.1 Dshi_3825 phenylacetic acid degradation protein PaaD 31792 32217 -1
CDS - YP_001542037.1 Dshi_3826 3-hydroxyacyl-CoA dehydrogenase NAD-binding 32430 34451 1
CDS - YP_001542038.1 Dshi_3827 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 34493 36529 1
CDS - YP_001542039.1 Dshi_3828 PaaX family transcriptional regulator 36567 37361 1
CDS - YP_001542040.1 Dshi_3829 hypothetical protein 37489 37941 1
CDS - YP_001542041.1 Dshi_3830 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 38247 39386 1
CDS - YP_001542042.1 Dshi_3831 sucrose-6F-phosphate phosphohydrolase 39383 40162 1
CDS - YP_001542043.1 Dshi_3832 glucosylglycerol-phosphate synthase 40174 41664 1
CDS - YP_001542044.1 Dshi_3833 phospholipase D/transphosphatidylase 41763 43181 -1
CDS - YP_001542045.1 Dshi_3834 signal transduction histidine kinase 43171 44907 -1
CDS - YP_001542046.1 Dshi_3835 RNA polymerase sigma factor 44882 45445 -1
CDS - YP_001542047.1 Dshi_3836 hypothetical protein 45442 45621 -1
CDS - YP_001542048.1 Dshi_3837 two-component response regulator 45758 46573 1
CDS - YP_001542049.1 Dshi_3838 hypothetical protein 46686 48080 -1
CDS - YP_001542050.1 Dshi_3839 Ferritin Dps family protein 48216 48713 -1
CDS - YP_001542051.1 Dshi_3840 thiamine pyrophosphate binding domain-containing protein 48774 50414 -1
CDS - YP_001542052.1 Dshi_3841 glutamate dehydrogenase 50414 51757 -1
CDS - YP_001542053.1 Dshi_3842 hypothetical protein 51857 52027 -1
CDS - YP_001542054.1 Dshi_3843 hypothetical protein 52170 52586 -1
CDS - YP_001542055.1 Dshi_3844 cyclic nucleotide-binding protein 52616 53344 1
CDS - YP_001542056.1 Dshi_3847 nuclease 54662 55786 1
CDS - YP_001542057.1 Dshi_3848 hypothetical protein 55886 56080 -1
CDS - YP_001542058.1 Dshi_3849 hypothetical protein 56108 56320 -1
CDS - YP_001542059.1 Dshi_3850 hypothetical protein 56328 56588 -1
CDS - YP_001542060.1 Dshi_3851 hypothetical protein 56652 56915 -1
CDS - YP_001542061.1 Dshi_3852 hypothetical protein 57076 58143 -1
CDS - YP_001542062.1 Dshi_3853 resolvase domain-containing protein 58283 59263 1
CDS - YP_001542063.1 Dshi_3854 hypothetical protein 59311 60357 -1
CDS - YP_001542064.1 Dshi_3855 cobyrinic acid ac-diamide synthase 60736 62127 1
CDS - YP_001542065.1 Dshi_3856 nuclease 62250 63425 1
CDS - YP_001542066.1 Dshi_3857 polysaccharide biosynthesis protein CapD 63834 65726 1
CDS - YP_001542067.1 Dshi_3858 protein of unknown function DUF940 membrane lipoprotein putative 66007 68247 1
CDS - YP_001542068.1 Dshi_3859 hypothetical protein 68244 69005 1
CDS - YP_001542069.1 Dshi_3860 hypothetical protein 69139 69381 1
CDS - YP_001542070.1 Dshi_3861 UDP-glucose 6-dehydrogenase 69562 70758 1
CDS - YP_001542071.1 Dshi_3862 hypothetical protein 70763 72700 1
CDS - YP_001542072.1 Dshi_3863 hypothetical protein 72755 73885 -1
CDS - YP_001542073.1 Dshi_3864 sulfotransferase 73902 74681 -1
CDS - YP_001542074.1 Dshi_3865 hypothetical protein 74804 75793 -1
CDS - YP_001542075.1 Dshi_3866 glycosyl transferase group 1 75905 79813 -1
CDS - YP_001542076.1 Dshi_3867 hypothetical protein 79818 80708 -1
CDS - YP_001542077.1 Dshi_3868 UDP-glucose 4-epimerase 80804 81883 -1
CDS - YP_001542078.1 Dshi_3869 hypothetical protein 81946 83121 -1
CDS - YP_001542079.1 Dshi_3870 peptidase S1 and S6 chymotrypsin/Hap 83556 84359 -1
CDS - YP_001542080.1 Dshi_3871 RTX toxins and related Ca2+-binding protein-like protein 84768 88262 1
CDS - YP_001542081.1 Dshi_3872 hemolysin-type calcium-binding region 88354 94041 1
CDS - YP_001542082.1 Dshi_3873 hypothetical protein 94097 94681 -1
CDS - YP_001542083.1 Dshi_3874 ATP-binding protein 94737 95561 -1
CDS - YP_001542084.1 Dshi_3875 integrase catalytic region 95558 97051 -1
CDS - YP_001542085.1 Dshi_3876 resolvase domain-containing protein 97190 97789 1
CDS - YP_001542086.1 Dshi_3877 thiamine biosynthesis protein ThiC 98310 100118 1
CDS - YP_001542087.1 Dshi_3878 transposase IS4 family protein 100522 101904 -1
CDS - YP_001542088.1 Dshi_3879 hypothetical protein 102305 103117 1
CDS - YP_001542089.1 Dshi_3880 hypothetical protein 103401 103925 1
CDS - YP_001542090.1 Dshi_3881 hypothetical protein 104842 105309 1
CDS - YP_001542091.1 Dshi_3882 transposase, putative 105261 105971 1
CDS - YP_001542092.1 Dshi_3883 hypothetical protein 106070 106648 -1
CDS - YP_001542093.1 Dshi_3884 multi anti extrusion protein MatE 106635 108044 -1
CDS - YP_001542094.1 Dshi_3885 phospholipase D/transphosphatidylase 108221 109795 1
CDS - YP_001542095.1 Dshi_3886 hypothetical protein 110041 110658 1
CDS - YP_001542096.1 Dshi_3887 cytochrome c class I 110663 111094 -1
CDS - YP_001542097.1 Dshi_3888 L-amino-acid oxidase 111091 112716 -1
CDS - YP_001542098.1 Dshi_3889 hypothetical protein 112739 113458 -1
CDS - YP_001542099.1 Dshi_3890 hypothetical protein 113475 113804 -1
CDS - YP_001542100.1 Dshi_3891 cytochrome c oxidase subunit I type 113801 116362 -1
CDS - YP_001542101.1 Dshi_3892 cytochrome c oxidase subunit II 116359 117396 -1
CDS - YP_001542102.1 Dshi_3893 cytochrome c class I 117396 117893 -1