• Summary page

Sequences

• E_faecalisR712-1.0_Cont0.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont3.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont4.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont5.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont6.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont7.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont16.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont17.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont19.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont31.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont32.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont32.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont42.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont43.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont44.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont47.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont48.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont52.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont53.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont54.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont55.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont56.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont58.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont61.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont63.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont65.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont67.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont67.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont67.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont67.4, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont68.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont73.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont74.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont75.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont77.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont77.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont78.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont79.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont79.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont80.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont89.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont105.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont105.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont115.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont116.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont117.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont119.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont129.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont129.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont130.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont131.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont131.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont133.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont135.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont136.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont137.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont137.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont138.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont138.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont138.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont147.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont148.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont149.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont150.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont151.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont152.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont154.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont159.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont161.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont162.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont167.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont168.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont169.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont169.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont178.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont179.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont180.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont181.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont183.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont183.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont184.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont185.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont186.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont187.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont188.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont189.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont190.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont191.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont193.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont195.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont196.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont197.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont197.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont206.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont207.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont207.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont208.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont209.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont209.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont209.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont212.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont212.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont212.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont216.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont225.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont226.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont226.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont226.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont227.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont249.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont249.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont249.3, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont252.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont255.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont260.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont265.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont271.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont276.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont276.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont285.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont290.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont304.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont326.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont411.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont423.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont423.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont513.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont667.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont691.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont723.1, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont723.2, whole genome shotgun sequence
• E_faecalisR712-1.0_Cont870.1, whole genome shotgun sequence

Taxonomy

cellular organisms
» Bacteria
» Firmicutes
» Bacilli
» Lactobacillales
» Enterococcaceae
» Enterococcus
» Enterococcus faecalis

Enterococcus faecalis R712

HMPREF9377_02408 - 23S rRNA (uracil-5-)-methyltransferase RumA

Analysis Tools

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve HMPREF9377_02408 nucleotide sequence in FASTA format

Retrieve HMPREF9377_02408 protein sequence in FASTA format

Retrieve HMPREF9377_02408 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF9377_02408 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis )

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Annotation

Product:

23S rRNA (uracil-5-)-methyltransferase RumA

GenBank ID: ZP_06630433.1

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