Escherichia coli O111:H- str. 11128

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve fimD nucleotide sequence in FASTA format

Retrieve fimD protein sequence in FASTA format

Retrieve ECO111_5171 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using ECO111_5171 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli Escherichia coli O111:H- )

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