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Escherichia sp. 4_1_40B, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05438934.1 E4_010100016983 Prophage integrase 357 1619 -1
tRNA - - E4_010100t17705 tRNA-Phe 1817 1892 -1
CDS - ZP_05438935.1 E4_010100016988 hypothetical protein 1990 2109 1
CDS - ZP_05438936.1 E4_010100016993 putative transcriptional regulator 1999 2574 -1
CDS dipZ ZP_05438937.1 E4_010100016998 thiol:disulfide interchange protein precursor 2611 4308 -1
CDS - ZP_05438938.1 E4_010100017003 divalent-cation tolerance protein CutA 4284 4622 -1
CDS - ZP_05438939.1 E4_010100017008 anaerobic C4-dicarboxylate transporter 4738 6039 -1
CDS aspA ZP_05438940.1 E4_010100017013 aspartate ammonia-lyase 6157 7593 -1
CDS fxsA ZP_05438941.1 E4_010100017018 FxsA 7930 8406 1
CDS - ZP_05438942.1 E4_010100017023 inner membrane protein YjeH 8422 9678 -1
CDS groES ZP_05438943.1 E4_010100017028 co-chaperonin GroES 9954 10247 1
CDS groEL ZP_05438944.1 E4_010100017033 chaperonin GroEL 10291 11937 1
CDS - ZP_05438945.1 E4_010100017038 hypothetical protein 12075 12428 1
CDS - ZP_05438946.1 E4_010100017043 hypothetical protein 12631 13500 -1
CDS - ZP_05438947.1 E4_010100017048 putative lysine aminomutase 13895 14923 -1
CDS - ZP_05438948.1 E4_010100017053 elongation factor P 14965 15531 1
CDS - ZP_05438949.1 E4_010100017058 entericidin A 15586 15708 1
CDS - ZP_05438950.1 E4_010100017063 entericidin B membrane lipoprotein 15819 15965 1
CDS - ZP_05438951.1 E4_010100017068 suppresser of groEL 15991 16458 1
CDS - ZP_05438952.1 E4_010100017073 outer membrane lipoprotein Blc 16455 16988 -1
CDS ampC ZP_05438953.1 E4_010100017078 beta-lactamase 17077 18210 -1
CDS - ZP_05438954.1 E4_010100017083 fumarate reductase subunit D 18273 18632 -1
CDS - ZP_05438955.1 E4_010100017088 fumarate reductase subunit C 18643 19038 -1
CDS - ZP_05438956.1 E4_010100017093 fumarate reductase iron-sulfur subunit 19049 19783 -1
CDS - ZP_05438957.1 E4_010100017098 fumarate reductase flavoprotein subunit 19776 21584 -1
CDS - ZP_05438958.1 E4_010100017103 lysyl-tRNA synthetase 21909 22886 1
CDS - ZP_05438959.1 E4_010100017108 putative transporter 23105 24607 1
CDS - ZP_05438960.1 E4_010100017113 hypothetical protein 24659 24973 1
CDS - ZP_05438961.1 E4_010100017118 conserved inner membrane protein 24970 25284 1
CDS - ZP_05438962.1 E4_010100017123 hypothetical protein 25313 28636 -1
CDS psd ZP_05438963.1 E4_010100017128 phosphatidylserine decarboxylase 28658 29626 -1
CDS - ZP_05438964.1 E4_010100017133 ribosome-associated GTPase 29723 30775 -1
CDS - ZP_05438965.1 E4_010100017138 oligoribonuclease 30870 31415 1
tRNA - - E4_010100t17707 tRNA-Gly 31626 31701 1
tRNA - - E4_010100t17709 tRNA-Gly 31738 31813 1
tRNA - - E4_010100t17711 tRNA-Gly 31849 31924 1
CDS - ZP_05438966.1 E4_010100017143 predicted Fe-S electron transport protein 32194 33333 -1
CDS - ZP_05438967.1 E4_010100017148 hypothetical protein 33332 34879 1
CDS - ZP_05438968.1 E4_010100017153 putative ATPase 34851 35312 1
CDS - ZP_05438969.1 E4_010100017158 N-acetylmuramoyl-l-alanine amidase II 35331 36668 1
CDS mutL ZP_05438970.1 E4_010100017163 DNA mismatch repair protein 36678 38525 1
CDS miaA ZP_05438971.1 E4_010100017168 tRNA delta(2)-isopentenylpyrophosphate transferase 38518 39468 1
CDS hfq ZP_05438972.1 E4_010100017173 RNA-binding protein Hfq 39554 39862 1
CDS - ZP_05438973.1 E4_010100017178 putative GTPase HflX 39938 41218 1
CDS - ZP_05438974.1 E4_010100017183 FtsH protease regulator HflK 41304 42563 1
CDS - ZP_05438975.1 E4_010100017188 FtsH protease regulator HflC 42566 43570 1
CDS - ZP_05438976.1 E4_010100017193 conserved inner membrane protein 43652 43849 1
CDS - ZP_05438977.1 E4_010100017198 adenylosuccinate synthetase 43953 45251 1
CDS - ZP_05438978.1 E4_010100017203 transcriptional repressor NsrR 45456 45881 1
CDS - ZP_05438979.1 E4_010100017208 exoribonuclease R 45920 48361 1
CDS - ZP_05438980.1 E4_010100017213 23S rRNA (guanosine-2'-O-)-methyltransferase 48541 49272 1
CDS - ZP_05438981.1 E4_010100017218 hypothetical protein 49399 49800 1
CDS - ZP_05438982.1 E4_010100017223 predicted transcriptional regulator effector protein 49819 50517 1
CDS - ZP_05438983.1 E4_010100017228 hypothetical protein 50568 51227 1
CDS - ZP_05438984.1 E4_010100017233 conserved inner membrane protein 51245 51643 1
CDS - ZP_05438985.1 E4_010100017238 hypothetical protein 51653 52291 1
CDS - ZP_05438986.1 E4_010100017243 predicted synthetase/amidase 52294 53457 1
CDS - ZP_05438987.1 E4_010100017248 isovaleryl CoA dehydrogenase 53541 55166 1
CDS - ZP_05438988.1 E4_010100017253 hypothetical protein 55283 55570 -1
CDS - ZP_05438989.1 E4_010100017258 hypothetical protein 55707 56036 -1
CDS - ZP_05438990.1 E4_010100017263 esterase 56218 56967 1
CDS - ZP_05438991.1 E4_010100017268 transcriptional repressor UlaR 56964 57719 -1
CDS - ZP_05438992.1 E4_010100017273 putative L-ascorbate 6-phosphate lactonase 57827 58891 -1
CDS ulaA ZP_05438993.1 E4_010100017278 ascorbate-specific PTS system enzyme IIC 59246 60643 1
CDS - ZP_05438994.1 E4_010100017283 L-ascorbate-specific enzyme IIB component of PTS 60659 60964 1
CDS - ZP_05438995.1 E4_010100017288 L-ascorbate-specific enzyme IIA component of PTS 60974 61438 1
CDS ulaD ZP_05438996.1 E4_010100017293 3-keto-L-gulonate-6-phosphate decarboxylase 61452 62102 1
CDS - ZP_05438997.1 E4_010100017298 L-xylulose 5-phosphate 3-epimerase 62112 62966 1
CDS sgaE ZP_05438998.1 E4_010100017303 L-ribulose-5-phosphate 4-epimerase 62966 63652 1
CDS - ZP_05438999.1 E4_010100017308 hypothetical protein 63781 64056 -1
CDS rpsF ZP_05439000.1 E4_010100017313 30S ribosomal protein S6 64384 64779 1
CDS - ZP_05439001.1 E4_010100017318 primosomal replication protein N 64786 65100 1
CDS rpsR ZP_05439002.1 E4_010100017323 30S ribosomal protein S18 65105 65332 1
CDS rplI ZP_05439003.1 E4_010100017328 50S ribosomal protein L9 65374 65823 1
CDS - ZP_05439004.1 E4_010100017333 putative dicarboxylate-binding periplasmic protein 65935 66906 -1
CDS - ZP_05439005.1 E4_010100017338 putative transport protein 66959 68260 -1
CDS - ZP_05439006.1 E4_010100017343 putative ATP-independent transporter subunit 68303 68803 -1
CDS - ZP_05439007.1 E4_010100017348 putative oxidoreductase 68800 70881 -1
CDS - ZP_05439008.1 E4_010100017353 coenzyme A transferase 70878 72419 -1
CDS - ZP_05439009.1 E4_010100017358 hypothetical protein 72429 73205 -1
CDS - ZP_05439010.1 E4_010100017363 xylose isomerase domain-containing protein 73215 74057 -1
CDS - ZP_05439011.1 E4_010100017368 3-ketoacyl-(acyl-carrier-protein) reductase 74067 74858 -1
CDS - ZP_05439012.1 E4_010100017373 TetR family transcriptional regulator 75071 75718 1
CDS - ZP_05439013.1 E4_010100017378 hypothetical protein 75702 76340 -1
CDS - ZP_05439014.1 E4_010100017383 peptidyl-prolyl cis-trans isomerase 76559 77179 1
CDS - ZP_05439015.1 E4_010100017388 D-alanine/D-serine/glycine permease 77488 78900 1
CDS - ZP_05439016.1 E4_010100017393 iron-sulfur cluster repair di-iron protein 78945 79607 -1
CDS - ZP_05439017.1 E4_010100017398 predicted inner membrane protein 79715 80680 -1
CDS - ZP_05439018.1 E4_010100017403 NAD(P)H:quinone oxidoreductase 80789 81649 -1
CDS - ZP_05439019.1 E4_010100017408 hypothetical protein 81738 82118 1
CDS cpdB ZP_05439020.1 E4_010100017413 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 82241 84184 -1
CDS - ZP_05439021.1 E4_010100017418 adenosine-3'(2'),5'-bisphosphate nucleotidase 84374 85114 1
CDS - ZP_05439022.1 E4_010100017423 predicted transcriptional regulator 85104 85661 -1
CDS - ZP_05439023.1 E4_010100017428 hypothetical protein 85986 86192 1
CDS - ZP_05439024.1 E4_010100017433 predicted inner membrane protein 86254 87597 -1
CDS - ZP_05439025.1 E4_010100017438 methionine sulfoxide reductase A 87920 88558 -1
CDS - ZP_05439026.1 E4_010100017443 hypothetical protein 88666 88794 1
CDS - ZP_05439027.1 E4_010100017448 predicted outer membrane protein and surface antigen 88764 90497 1
CDS - ZP_05439028.1 E4_010100017453 hypothetical protein 90494 94273 1
CDS - ZP_05439029.1 E4_010100017458 hypothetical protein 94276 94617 1