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Escherichia sp. 4_1_40B, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
tRNA - - E4_010100t22673 tRNA-Trp 9 84 1
CDS - ZP_05439978.1 E4_010100022256 transcriptional regulator HdfR 180 1019 -1
CDS - ZP_05439979.1 E4_010100022261 hypothetical protein 1138 1476 1
CDS - ZP_05439980.1 E4_010100022266 putative ATP-dependent protease 1501 3021 -1
CDS - ZP_05439981.1 E4_010100022271 acetolactate synthase 2 catalytic subunit 3612 5258 1
CDS ilvM ZP_05439982.1 E4_010100022276 acetolactate synthase 2 regulatory subunit 5258 5518 1
CDS - ZP_05439983.1 E4_010100022281 branched-chain amino acid aminotransferase 5538 6467 1
CDS - ZP_05439984.1 E4_010100022286 dihydroxy-acid dehydratase 6532 8382 1
CDS - ZP_05439985.1 E4_010100022291 threonine dehydratase 8385 9929 1
CDS - ZP_05439986.1 E4_010100022296 DNA-binding transcriptional regulator IlvY 9981 10874 -1
CDS - ZP_05439987.1 E4_010100022301 ketol-acid reductoisomerase 11024 12499 1
CDS - ZP_05439988.1 E4_010100022306 peptidyl-prolyl cis-trans isomerase C (rotamase C) 12586 12867 -1
CDS - ZP_05439989.1 E4_010100022311 hypothetical protein 13066 13341 -1
CDS - ZP_05439990.1 E4_010100022316 hypothetical protein 13296 13514 -1
CDS - ZP_05439991.1 E4_010100022321 ATP-dependent DNA helicase Rep 13731 15752 1
CDS - ZP_05439992.1 E4_010100022326 guanosine pentaphosphate phosphohydrolase 15799 17283 -1
CDS - ZP_05439993.1 E4_010100022331 ATP-dependent RNA helicase RhlB 17419 18684 -1
CDS trxA ZP_05439994.1 E4_010100022336 thioredoxin 18815 19144 1
CDS - ZP_05439995.1 E4_010100022341 putative rho operon leader peptide 19285 19386 1
CDS rho ZP_05439996.1 E4_010100022346 transcription termination factor Rho 19471 20730 1
CDS - ZP_05439997.1 E4_010100022351 hypothetical protein 20740 20958 1
CDS - ZP_05439998.1 E4_010100022356 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 20970 22073 1
CDS - ZP_05439999.1 E4_010100022361 lipopolysaccharide biosynthesis protein WzzE 22085 23131 1
CDS - ZP_05440000.1 E4_010100022366 UDP-N-acetyl glucosamine-2-epimerase 23187 24317 1
CDS wecC ZP_05440001.1 E4_010100022371 UDP-N-acetyl-D-mannosamine dehydrogenase 24314 25576 1
CDS - ZP_05440002.1 E4_010100022376 dTDP-glucose 4,6-dehydratase 25576 26643 1
CDS - ZP_05440003.1 E4_010100022381 glucose-1-phosphate thymidylyltransferase 26662 27543 1
CDS - ZP_05440004.1 E4_010100022386 TDP-fucosamine acetyltransferase 27521 28195 1
CDS - ZP_05440005.1 E4_010100022391 TDP-4-oxo-6-deoxy-D-glucose transaminase 28200 29330 1
CDS - ZP_05440006.1 E4_010100022396 O-antigen translocase 29332 30582 1
CDS - ZP_05440007.1 E4_010100022401 4-alpha-L-fucosyltransferase 30579 31658 1
CDS - ZP_05440008.1 E4_010100022406 putative common antigen polymerase 31655 33007 1
CDS - ZP_05440009.1 E4_010100022411 putative UDP-N-acetyl-D-mannosaminuronic acid transferase 33010 33750 1
CDS - ZP_05440010.1 E4_010100022416 putative transport protein YifK 33941 35326 1
tRNA - - E4_010100t22675 tRNA-Arg 35429 35505 1
tRNA - - E4_010100t22677 tRNA-His 35564 35639 1
tRNA - - E4_010100t22679 tRNA-Leu 35660 35746 1
tRNA - - E4_010100t22681 tRNA-Pro 35789 35865 1
CDS - ZP_05440011.1 E4_010100022421 putative regulator of arylsulfatase activity 36012 37247 1
CDS - ZP_05440012.1 E4_010100022426 acrylsulfatase-like enzyme 37406 39061 -1
CDS - ZP_05440013.1 E4_010100022431 putative protoheme IX biogenesis protein 39740 40936 -1
CDS - ZP_05440014.1 E4_010100022436 putative uroporphyrinogen III C-methyltransferase 40939 42138 -1
CDS hemD ZP_05440015.1 E4_010100022441 uroporphyrinogen-III synthase 42160 42900 -1
CDS hemC ZP_05440016.1 E4_010100022446 porphobilinogen deaminase 42897 43838 -1
CDS cyaA ZP_05440017.1 E4_010100022451 adenylate cyclase 44225 46771 1
CDS cyaY ZP_05440018.1 E4_010100022456 frataxin-like protein 46811 47131 -1
CDS - ZP_05440019.1 E4_010100022461 hypothetical protein 46922 47407 1
CDS - ZP_05440020.1 E4_010100022466 predicted lipoprotein 47594 47797 1
CDS dapF ZP_05440021.1 E4_010100022471 diaminopimelate epimerase 47834 48658 1
CDS - ZP_05440022.1 E4_010100022476 hypothetical protein 48655 49362 1
CDS xerC ZP_05440023.1 E4_010100022481 site-specific tyrosine recombinase XerC 49359 50255 1
CDS - ZP_05440024.1 E4_010100022486 flavin mononucleotide phosphatase 50255 50971 1
CDS uvrD ZP_05440025.1 E4_010100022491 DNA-dependent helicase II 51055 53217 1
CDS - ZP_05440026.1 E4_010100022496 hypothetical protein 53364 54128 -1
CDS - ZP_05440027.1 E4_010100022501 hypothetical protein 54120 54254 1
CDS - ZP_05440028.1 E4_010100022506 magnesium/nickel/cobalt transporter CorA 54498 55448 1
CDS - ZP_05440029.1 E4_010100022511 conserved inner membrane protein 55491 55871 -1
CDS - ZP_05440030.1 E4_010100022516 hypothetical protein 55885 56301 -1
CDS - ZP_05440031.1 E4_010100022521 predicted chloramphenical resistance permease 56360 57250 -1
CDS - ZP_05440032.1 E4_010100022526 hypothetical protein 57302 57769 -1
CDS - ZP_05440033.1 E4_010100022531 phospholipase A 57934 58803 1
CDS - ZP_05440034.1 E4_010100022536 ATP-dependent DNA helicase RecQ 58930 60765 1
CDS - ZP_05440035.1 E4_010100022541 threonine efflux system 60829 61449 1
CDS rhtB ZP_05440036.1 E4_010100022546 homoserine/homoserine lactone efflux protein 61511 62131 -1
CDS - ZP_05440037.1 E4_010100022551 lysophospholipase L2 62242 63264 1
CDS - ZP_05440038.1 E4_010100022556 putative sugar phosphatase 63272 64072 1
CDS - ZP_05440039.1 E4_010100022561 predicted inner membrane protein 64148 65047 1
CDS - ZP_05440040.1 E4_010100022566 DNA-binding transcriptional activator, homocysteine-binding protein 64935 65888 -1
CDS - ZP_05440041.1 E4_010100022571 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 66125 68386 1
CDS - ZP_05440042.1 E4_010100022576 putative hydrolase 68426 69241 -1
CDS - ZP_05440043.1 E4_010100022581 uridine phosphorylase 69503 70264 1
CDS - ZP_05440044.1 E4_010100022586 DNA recombination protein RmuC 70420 71832 1
CDS ubiE ZP_05440045.1 E4_010100022591 ubiquinone/menaquinone biosynthesis methyltransferase 71927 72682 1
CDS - ZP_05440046.1 E4_010100022596 hypothetical protein 72696 73301 1
CDS ubiB ZP_05440047.1 E4_010100022601 putative ubiquinone biosynthesis protein UbiB 73298 74938 1
CDS tatA ZP_05440048.1 E4_010100022606 twin arginine translocase protein A 75017 75286 1
CDS - ZP_05440049.1 E4_010100022611 sec-independent translocase 75290 75805 1
CDS - ZP_05440050.1 E4_010100022616 twin-arginine protein translocation system subunit TatC 75808 76584 1
CDS - ZP_05440051.1 E4_010100022621 DNase TatD 76626 77408 1
CDS rfaH ZP_05440052.1 E4_010100022626 transcriptional activator RfaH 77405 77893 -1
CDS - ZP_05440053.1 E4_010100022631 3-octaprenyl-4-hydroxybenzoate decarboxylase 78060 79553 1
CDS fre ZP_05440054.1 E4_010100022636 FMN reductase 79599 80300 1
CDS fadA ZP_05440055.1 E4_010100022641 3-ketoacyl-CoA thiolase 80583 81746 -1
CDS fadB ZP_05440056.1 E4_010100022646 multifunctional fatty acid oxidation complex subunit alpha 81756 83945 -1
CDS - ZP_05440057.1 E4_010100022651 proline dipeptidase 84135 85466 1
CDS - ZP_05440058.1 E4_010100022656 hypothetical protein 85466 86080 1
CDS - ZP_05440059.1 E4_010100022661 potassium transporter 86119 87570 1
CDS hemG ZP_05440060.1 E4_010100022666 protoporphyrinogen oxidase 87582 88127 1