• Summary page

Sequences

• contig00206, whole genome shotgun sequence
• contig00039, whole genome shotgun sequence
• contig00162, whole genome shotgun sequence
• contig00196, whole genome shotgun sequence
• contig00085, whole genome shotgun sequence
• contig00176, whole genome shotgun sequence
• contig00023, whole genome shotgun sequence
• contig00204, whole genome shotgun sequence
• contig00021, whole genome shotgun sequence
• contig00053, whole genome shotgun sequence
• contig00064, whole genome shotgun sequence
• contig00111, whole genome shotgun sequence
• contig00033, whole genome shotgun sequence
• contig00242, whole genome shotgun sequence
• contig00167, whole genome shotgun sequence
• contig00067, whole genome shotgun sequence
• contig00025, whole genome shotgun sequence
• contig00245, whole genome shotgun sequence
• contig00187, whole genome shotgun sequence
• contig00232, whole genome shotgun sequence
• contig00161, whole genome shotgun sequence
• contig00260, whole genome shotgun sequence
• contig00229, whole genome shotgun sequence
• contig00038, whole genome shotgun sequence
• contig00044, whole genome shotgun sequence
• contig00016, whole genome shotgun sequence
• contig00098, whole genome shotgun sequence
• contig00165, whole genome shotgun sequence
• contig00184, whole genome shotgun sequence
• contig00238, whole genome shotgun sequence
• contig00077, whole genome shotgun sequence
• contig00036, whole genome shotgun sequence
• contig00218, whole genome shotgun sequence
• contig00192, whole genome shotgun sequence
• contig00068, whole genome shotgun sequence
• contig00234, whole genome shotgun sequence
• contig00020, whole genome shotgun sequence
• contig00217, whole genome shotgun sequence
• contig00104, whole genome shotgun sequence
• contig00070, whole genome shotgun sequence
• contig00173, whole genome shotgun sequence
• contig00087, whole genome shotgun sequence
• contig00156, whole genome shotgun sequence
• contig00092, whole genome shotgun sequence
• contig00073, whole genome shotgun sequence
• contig00079, whole genome shotgun sequence
• contig00249, whole genome shotgun sequence
• contig00219, whole genome shotgun sequence
• contig00208, whole genome shotgun sequence
• contig00001, whole genome shotgun sequence
• contig00022, whole genome shotgun sequence
• contig00273, whole genome shotgun sequence
• contig00188, whole genome shotgun sequence
• contig00107, whole genome shotgun sequence
• contig00228, whole genome shotgun sequence
• contig00252, whole genome shotgun sequence
• contig00271, whole genome shotgun sequence
• contig00215, whole genome shotgun sequence
• contig00019, whole genome shotgun sequence
• contig00190, whole genome shotgun sequence
• contig00081, whole genome shotgun sequence
• contig00256, whole genome shotgun sequence
• contig00226, whole genome shotgun sequence
• contig00058, whole genome shotgun sequence
• contig00263, whole genome shotgun sequence
• contig00030, whole genome shotgun sequence
• contig00274, whole genome shotgun sequence
• contig00220, whole genome shotgun sequence
• contig00203, whole genome shotgun sequence
• contig00178, whole genome shotgun sequence
• contig00211, whole genome shotgun sequence
• contig00268, whole genome shotgun sequence
• contig00200, whole genome shotgun sequence
• contig00099, whole genome shotgun sequence
• contig00235, whole genome shotgun sequence
• contig00029, whole genome shotgun sequence
• contig00168, whole genome shotgun sequence
• contig00205, whole genome shotgun sequence
• contig00240, whole genome shotgun sequence
• contig00241, whole genome shotgun sequence
• contig00261, whole genome shotgun sequence
• contig00056, whole genome shotgun sequence
• contig00013, whole genome shotgun sequence
• contig00170, whole genome shotgun sequence
• contig00046, whole genome shotgun sequence
• contig00195, whole genome shotgun sequence
• contig00052, whole genome shotgun sequence
• contig00009, whole genome shotgun sequence
• contig00254, whole genome shotgun sequence
• contig00042, whole genome shotgun sequence
• contig00026, whole genome shotgun sequence
• contig00074, whole genome shotgun sequence
• contig00011, whole genome shotgun sequence
• contig00032, whole genome shotgun sequence
• contig00103, whole genome shotgun sequence
• contig00198, whole genome shotgun sequence
• contig00266, whole genome shotgun sequence
• contig00171, whole genome shotgun sequence
• contig00264, whole genome shotgun sequence
• contig00244, whole genome shotgun sequence
• contig00086, whole genome shotgun sequence
• contig00090, whole genome shotgun sequence
• contig00269, whole genome shotgun sequence
• contig00072, whole genome shotgun sequence
• contig00186, whole genome shotgun sequence
• contig00193, whole genome shotgun sequence
• contig00164, whole genome shotgun sequence
• contig00177, whole genome shotgun sequence
• contig00015, whole genome shotgun sequence
• contig00191, whole genome shotgun sequence
• contig00233, whole genome shotgun sequence
• contig00222, whole genome shotgun sequence
• contig00163, whole genome shotgun sequence
• contig00251, whole genome shotgun sequence
• contig00057, whole genome shotgun sequence
• contig00185, whole genome shotgun sequence
• contig00157, whole genome shotgun sequence
• contig00259, whole genome shotgun sequence
• contig00093, whole genome shotgun sequence
• contig00213, whole genome shotgun sequence
• contig00230, whole genome shotgun sequence
• contig00202, whole genome shotgun sequence
• contig00059, whole genome shotgun sequence
• contig00048, whole genome shotgun sequence
• contig00075, whole genome shotgun sequence
• contig00169, whole genome shotgun sequence
• contig00017, whole genome shotgun sequence
• contig00050, whole genome shotgun sequence
• contig00061, whole genome shotgun sequence
• contig00258, whole genome shotgun sequence
• contig00066, whole genome shotgun sequence
• contig00054, whole genome shotgun sequence
• contig00078, whole genome shotgun sequence
• contig00024, whole genome shotgun sequence
• contig00063, whole genome shotgun sequence
• contig00083, whole genome shotgun sequence
• contig00275, whole genome shotgun sequence
• contig00080, whole genome shotgun sequence
• contig00250, whole genome shotgun sequence
• contig00216, whole genome shotgun sequence
• contig00158, whole genome shotgun sequence
• contig00194, whole genome shotgun sequence
• contig00225, whole genome shotgun sequence
• contig00221, whole genome shotgun sequence
• contig00037, whole genome shotgun sequence
• contig00172, whole genome shotgun sequence
• contig00031, whole genome shotgun sequence
• contig00207, whole genome shotgun sequence
• contig00034, whole genome shotgun sequence
• contig00199, whole genome shotgun sequence
• contig00237, whole genome shotgun sequence
• contig00214, whole genome shotgun sequence
• contig00049, whole genome shotgun sequence
• contig00091, whole genome shotgun sequence
• contig00108, whole genome shotgun sequence
• contig00069, whole genome shotgun sequence
• contig00262, whole genome shotgun sequence
• contig00231, whole genome shotgun sequence
• contig00236, whole genome shotgun sequence
• contig00209, whole genome shotgun sequence
• contig00062, whole genome shotgun sequence
• contig00201, whole genome shotgun sequence
• contig00224, whole genome shotgun sequence
• contig00239, whole genome shotgun sequence
• contig00051, whole genome shotgun sequence
• contig00027, whole genome shotgun sequence
• contig00055, whole genome shotgun sequence
• contig00018, whole genome shotgun sequence
• contig00181, whole genome shotgun sequence
• contig00010, whole genome shotgun sequence
• contig00154, whole genome shotgun sequence
• contig00272, whole genome shotgun sequence
• contig00045, whole genome shotgun sequence
• contig00002, whole genome shotgun sequence
• contig00270, whole genome shotgun sequence
• contig00166, whole genome shotgun sequence
• contig00227, whole genome shotgun sequence
• contig00060, whole genome shotgun sequence
• contig00014, whole genome shotgun sequence
• contig00189, whole genome shotgun sequence
• contig00047, whole genome shotgun sequence
• contig00007, whole genome shotgun sequence
• contig00043, whole genome shotgun sequence
• contig00253, whole genome shotgun sequence
• contig00248, whole genome shotgun sequence
• contig00212, whole genome shotgun sequence
• contig00255, whole genome shotgun sequence

Taxonomy

cellular organisms
» Bacteria
» Firmicutes
» Bacilli
» Lactobacillales
» Lactobacillaceae
» Lactobacillus
» Lactobacillus crispatus

Lactobacillus crispatus 214-1

pyrF - orotidine 5'-phosphate decarboxylase / HUMPS family protein

Analysis Tools

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve pyrF nucleotide sequence in FASTA format

Retrieve pyrF protein sequence in FASTA format

Retrieve HMPREF0891_0976 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF0891_0976 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus )

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Annotation

Product:

orotidine 5'-phosphate decarboxylase / HUMPS family protein

GenBank ID: ZP_06626180.1

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