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Lactobacillus iners DSM 13335, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS sasA ZP_05743395.1 HMPREF0520_0003 LPXTG cell wall surface anchor family protein 44 259 1
CDS - ZP_05743396.1 HMPREF0520_0004 conserved hypothetical protein 398 622 1
CDS - ZP_05743397.1 HMPREF0520_0005 conserved hypothetical protein 626 1324 1
CDS corC ZP_05743398.1 HMPREF0520_0006 magnesium and cobalt efflux protein CorC 1370 2713 1
CDS hpt ZP_05743399.1 HMPREF0520_0007 hypoxanthine phosphoribosyltransferase 2806 3372 1
CDS srmB3 ZP_05743400.1 HMPREF0520_0008 ATP-dependent RNA helicase 3428 4663 1
tRNA - - HMPREF0520_t0001 tRNA-Arg 4682 4754 -1
CDS - ZP_05743401.1 HMPREF0520_0009 conserved hypothetical protein 4806 4985 -1
CDS mnaA ZP_05743402.1 HMPREF0520_0010 UDP-N-acetylglucosamine 2-epimerase 5098 6240 1
CDS fld ZP_05743403.1 HMPREF0520_0011 flavodoxin 6306 6752 -1
CDS map2 ZP_05743404.1 HMPREF0520_0012 methionyl aminopeptidase 6885 7706 1
CDS - ZP_05743405.1 HMPREF0520_0013 conserved hypothetical protein 7710 8630 1
CDS galU ZP_05743406.1 HMPREF0520_0014 UTP-glucose-1-phosphate uridylyltransferase 8670 9557 1
CDS - ZP_05743407.1 HMPREF0520_0015 cell surface hydrolase 9977 10930 1
CDS rumA2 ZP_05743408.1 HMPREF0520_0016 23S rRNA (uracil-5-)-methyltransferase RumA 11173 12558 -1
CDS recX ZP_05743409.1 HMPREF0520_0017 regulatory protein RecX 12654 13469 1
CDS - ZP_05743410.1 HMPREF0520_0018 conserved hypothetical protein 13489 13980 1
CDS - ZP_05743411.1 HMPREF0520_0019 conserved hypothetical protein 13984 14430 -1
CDS ysiA ZP_05743412.1 HMPREF0520_0020 hemolysin 14538 15413 1
CDS prfC ZP_05743413.1 HMPREF0520_0021 peptide chain release factor RF3 15413 16984 1
CDS - ZP_05743414.1 HMPREF0520_0022 conserved hypothetical protein 17123 20074 1
CDS polA ZP_05743415.1 HMPREF0520_0023 DNA-directed DNA polymerase I 20104 22776 1
CDS fpg ZP_05743416.1 HMPREF0520_0024 DNA-formamidopyrimidine glycosylase 22789 23619 1
CDS coaE ZP_05743417.1 HMPREF0520_0025 dephospho-CoA kinase 23616 24209 1
CDS iro ZP_05743418.1 HMPREF0520_0026 iron oxidase 24213 24680 1
CDS - ZP_05743419.1 HMPREF0520_0027 conserved hypothetical protein 24684 26030 1
CDS dnaI ZP_05743420.1 HMPREF0520_0028 primosomal protein DnaI 26014 26946 1
CDS thrS ZP_05743421.1 HMPREF0520_0029 threonine-tRNA ligase 27215 29146 1
CDS infC ZP_05743422.1 HMPREF0520_0030 initiation factor IF3 29447 29851 1
CDS rpl ZP_05743423.1 HMPREF0520_0031 50S ribosomal protein L35 29873 30073 1
CDS rplT ZP_05743424.1 HMPREF0520_0032 50S ribosomal protein L20 30110 30466 1
CDS lacR2 ZP_05743425.1 HMPREF0520_0033 lactose PTS family porter repressor 30601 31362 1
CDS fruB ZP_05743426.1 HMPREF0520_0034 1-phosphofructokinase 31362 32276 1
CDS fruA ZP_05743427.1 HMPREF0520_0035 PTS family fructose porter, IIABC component 32304 34196 1
CDS - ZP_05743428.1 HMPREF0520_0036 hydrolase 34315 34833 1
CDS - ZP_05743429.1 HMPREF0520_0037 GTP-binding protein 34833 35945 1
CDS nadD ZP_05743430.1 HMPREF0520_0038 nicotinate-nucleotide adenylyltransferase 35945 36574 1
CDS - ZP_05743431.1 HMPREF0520_0039 HD domain protein 36567 37175 1
CDS - ZP_05743432.1 HMPREF0520_0040 conserved hypothetical protein 37187 37531 1
CDS - ZP_05743433.1 HMPREF0520_0041 conserved hypothetical protein 37541 38701 1
CDS - ZP_05743434.1 HMPREF0520_0042 conserved hypothetical protein 38702 39229 1
CDS csrR ZP_05743435.1 HMPREF0520_0043 DNA-binding response regulator 39345 40070 1
CDS lisK ZP_05743436.1 HMPREF0520_0044 sensor histidine kinase 40048 41589 1
CDS oxaA ZP_05743437.1 HMPREF0520_0045 membrane protein OxaA 41674 42633 -1
CDS - ZP_05743438.1 HMPREF0520_0046 TrmH family RNA methyltransferase 42776 43543 1
CDS - ZP_05743439.1 HMPREF0520_0047 conserved hypothetical protein 43616 43963 1
CDS pheS ZP_05743440.1 HMPREF0520_0048 phenylalanyl-tRNA synthetase 44254 45303 1
CDS pheT ZP_05743441.1 HMPREF0520_0049 phenylalanyl-tRNA synthetase 45303 47717 1
CDS pabC ZP_05743442.1 HMPREF0520_0050 aminodeoxychorismate lyase 47741 48841 1
CDS greA2 ZP_05743443.1 HMPREF0520_0051 transcription elongation factor GreA 48875 49399 1
CDS pbp ZP_05743444.1 HMPREF0520_0052 penicillin-binding protein 2B 49454 51556 1
CDS - ZP_05743445.1 HMPREF0520_0053 conserved hypothetical protein 51563 54145 1
CDS - ZP_05743446.1 HMPREF0520_0054 mannose/fructose/sorbose family PTS system 54277 54684 1
CDS - ZP_05743447.1 HMPREF0520_0055 PTS family porter 54702 55193 1
CDS - ZP_05743448.1 HMPREF0520_0056 PTS family porter 55210 56034 1
CDS - ZP_05743449.1 HMPREF0520_0057 PTS family porter 56031 56858 1
CDS - ZP_05743450.1 HMPREF0520_0058 MgtC family protein 56859 57563 1
CDS rpoN ZP_05743451.1 HMPREF0520_0059 DNA-directed RNA polymerase sigma subunit RpoN 57577 58857 1
CDS pepX ZP_05743452.1 HMPREF0520_0060 xaa-Pro dipeptidyl-peptidase 58931 61315 -1
CDS pepN ZP_05743453.1 HMPREF0520_0061 aminopeptidase N 61466 64006 1
tRNA - - HMPREF0520_t0002 tRNA-Arg 64084 64157 1
CDS rpmG2 ZP_05743454.1 HMPREF0520_0062 conserved hypothetical protein 64331 64480 1
CDS fthC ZP_05743455.1 HMPREF0520_0063 5-formyltetrahydrofolate cyclo-ligase 64537 65088 1
CDS - ZP_05743456.1 HMPREF0520_0064 conserved hypothetical protein 65102 65800 1
CDS - ZP_05743457.1 HMPREF0520_0065 conserved hypothetical protein 65800 66018 1
CDS - ZP_05743458.1 HMPREF0520_0066 conserved hypothetical protein 66053 66454 1
CDS - ZP_05743459.1 HMPREF0520_0067 conserved hypothetical protein 66509 66688 -1
CDS miaA ZP_05743460.1 HMPREF0520_0068 tRNA delta(2)-isopentenylpyrophosphate transferase 66757 67698 1
CDS glnA ZP_05743461.1 HMPREF0520_0069 glutamate-ammonia ligase 67803 69140 1
CDS - ZP_05743462.1 HMPREF0520_0070 major facilitator superfamily transporter permease 69270 70418 1
CDS - ZP_05743463.1 HMPREF0520_0071 ABC superfamily ATP binding cassette transporter ABC protein, ABC protein 70458 71411 1
CDS - ZP_05743464.1 HMPREF0520_0072 ABC superfamily ATP binding cassette transporter, membrane protein 71404 72912 1
CDS pulA ZP_05743465.1 HMPREF0520_0073 pullulanase 72979 74967 1
CDS - ZP_05743466.1 HMPREF0520_0074 cation-transporting ATPase 74973 77258 -1
tRNA - - HMPREF0520_t0003 tRNA-Ser 77354 77440 1
CDS - ZP_05743467.1 HMPREF0520_0075 conserved hypothetical protein 77515 78090 1
CDS eno2 ZP_05743468.1 HMPREF0520_0076 phosphopyruvate hydratase 78244 79530 1
CDS pulA2 ZP_05743469.1 HMPREF0520_0077 pullulanase 79667 81538 1
CDS - ZP_05743470.1 HMPREF0520_0078 ABC superfamily ATP binding cassette transporter, ABC protein 81586 83178 1
CDS metN ZP_05743471.1 HMPREF0520_0079 D-methionine ABC superfamily ATP binding cassette transporter, ABC protein 83559 84608 1
CDS metI ZP_05743472.1 HMPREF0520_0080 D-methionine ABC superfamily ATP binding cassette transporter, permease protein 84601 85302 1
CDS - ZP_05743473.1 HMPREF0520_0081 integral membrane protein 85503 86804 1
CDS - ZP_05743474.1 HMPREF0520_0082 YbaK/EbsC family protein 86859 87365 -1
CDS - ZP_05743475.1 HMPREF0520_0083 ribosomal protein L11 methyltransferase 87451 88359 1
CDS - ZP_05743476.1 HMPREF0520_0084 conserved hypothetical protein 88396 88776 1
CDS relA2 ZP_05743477.1 HMPREF0520_0085 GTP diphosphokinase 88786 91038 1
CDS dtd ZP_05743478.1 HMPREF0520_0086 D-tyrosyl-tRNA(Tyr) deacylase 91038 91475 1
CDS hisS ZP_05743479.1 HMPREF0520_0087 histidine-tRNA ligase 91722 93008 1
CDS aspS ZP_05743480.1 HMPREF0520_0088 aspartate-tRNA ligase 93011 94849 1
CDS - ZP_05743481.1 HMPREF0520_0089 flavin reductase 94930 95502 1
CDS - ZP_05743482.1 HMPREF0520_0090 YitT family protein 95627 96505 1
CDS - ZP_05743483.1 HMPREF0520_0091 conserved hypothetical protein 96557 97390 -1
CDS rpsU ZP_05743484.1 HMPREF0520_0092 30S ribosomal protein S21 97592 97768 1
CDS - ZP_05743485.1 HMPREF0520_0093 GatB/Yqey family protein 97865 98308 1
CDS phoH ZP_05743486.1 HMPREF0520_0094 PhoH family protein 98325 99290 1
CDS - ZP_05743487.1 HMPREF0520_0095 conserved hypothetical protein 99287 99814 1
CDS era ZP_05743488.1 HMPREF0520_0096 GTP-binding protein Era 99830 100732 1
CDS recO ZP_05743489.1 HMPREF0520_0097 DNA repair protein RecO 100736 101482 1
CDS glyQ ZP_05743490.1 HMPREF0520_0098 glycyl-tRNA synthetase 101737 102642 1
CDS glyS ZP_05743491.1 HMPREF0520_0099 glycyl-tRNA synthetase 102644 104713 1