• Summary page

Sequences

• contig00038, whole genome shotgun sequence
• contig00037, whole genome shotgun sequence
• contig00078, whole genome shotgun sequence
• contig00026, whole genome shotgun sequence
• contig00010, whole genome shotgun sequence
• contig00031, whole genome shotgun sequence
• contig00023, whole genome shotgun sequence
• contig00021, whole genome shotgun sequence
• contig00049, whole genome shotgun sequence
• contig00066, whole genome shotgun sequence
• contig00032, whole genome shotgun sequence
• contig00068, whole genome shotgun sequence
• contig00075, whole genome shotgun sequence
• contig00025, whole genome shotgun sequence
• contig00014, whole genome shotgun sequence
• contig00036, whole genome shotgun sequence
• contig00040, whole genome shotgun sequence
• contig00015, whole genome shotgun sequence
• contig00057, whole genome shotgun sequence
• contig00084, whole genome shotgun sequence
• contig00034, whole genome shotgun sequence
• contig00059, whole genome shotgun sequence
• contig00044, whole genome shotgun sequence
• contig00080, whole genome shotgun sequence
• contig00070, whole genome shotgun sequence
• contig00046, whole genome shotgun sequence
• contig00016, whole genome shotgun sequence
• contig00020, whole genome shotgun sequence
• contig00062, whole genome shotgun sequence
• contig00074, whole genome shotgun sequence
• contig00067, whole genome shotgun sequence
• contig00086, whole genome shotgun sequence
• contig00050, whole genome shotgun sequence
• contig00024, whole genome shotgun sequence
• contig00076, whole genome shotgun sequence
• contig00064, whole genome shotgun sequence
• contig00104, whole genome shotgun sequence
• contig00002, whole genome shotgun sequence
• contig00022, whole genome shotgun sequence
• contig00001, whole genome shotgun sequence
• contig00035, whole genome shotgun sequence
• contig00030, whole genome shotgun sequence
• contig00033, whole genome shotgun sequence
• contig00045, whole genome shotgun sequence
• contig00019, whole genome shotgun sequence
• contig00073, whole genome shotgun sequence
• contig00058, whole genome shotgun sequence
• contig00029, whole genome shotgun sequence
• contig00063, whole genome shotgun sequence
• contig00027, whole genome shotgun sequence
• contig00047, whole genome shotgun sequence
• contig00051, whole genome shotgun sequence
• contig00028, whole genome shotgun sequence
• contig00018, whole genome shotgun sequence
• contig00009, whole genome shotgun sequence
• contig00004, whole genome shotgun sequence
• contig00041, whole genome shotgun sequence
• contig00013, whole genome shotgun sequence
• contig00060, whole genome shotgun sequence
• contig00054, whole genome shotgun sequence
• contig00012, whole genome shotgun sequence
• contig00043, whole genome shotgun sequence
• contig00005, whole genome shotgun sequence
• contig00039, whole genome shotgun sequence
• contig00042, whole genome shotgun sequence
• contig00048, whole genome shotgun sequence
• contig00007, whole genome shotgun sequence

Taxonomy

cellular organisms
» Bacteria
» Firmicutes
» Bacilli
» Lactobacillales
» Lactobacillaceae
» Lactobacillus
» Lactobacillus iners

Lactobacillus iners LactinV 03V1-b

rnr - ribonuclease R

Analysis Tools

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve rnr nucleotide sequence in FASTA format

Retrieve rnr protein sequence in FASTA format

Retrieve HMPREF9212_0685 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF9212_0685 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners )

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Annotation

Product:

ribonuclease R

GenBank ID: ZP_07699873.1

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