Lactobacillus iners LactinV 11V1-d

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve rpsK nucleotide sequence in FASTA format

Retrieve rpsK protein sequence in FASTA format

Retrieve HMPREF9214_1171 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using HMPREF9214_1171 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners )

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