Pedobacter heparinus DSM 2366

View alignment of region with nucmer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve Phep_1515 nucleotide sequence in FASTA format

Retrieve Phep_1515 protein sequence in FASTA format

Retrieve Phep_1515 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using Phep_1515 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Bacteroidetes/Chlorobi group Bacteroidetes Sphingobacteria Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus )

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