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Photobacterium damselae subsp. damselae CIP 102761, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06154453.1 VDA_001172 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase 100 1482 1
CDS - ZP_06154454.1 VDA_001173 phospho-N-acetylmuramoyl-pentapeptide- transferase 1479 2561 1
CDS - ZP_06154455.1 VDA_001174 UDP-N-acetylmuramoylalanine--D-glutamate ligase 2565 3908 1
CDS - ZP_06154456.1 VDA_001175 cell division protein FtsW 3902 5206 1
CDS - ZP_06154457.1 VDA_001176 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 5322 6257 1
CDS - ZP_06154458.1 VDA_001177 UDP-N-acetylmuramate--alanine ligase 6315 7733 1
CDS - ZP_06154459.1 VDA_001178 cell division protein FtsQ 8006 8797 1
CDS - ZP_06154460.1 VDA_001179 cell division protein FtsA 8797 10056 1
CDS - ZP_06154461.1 VDA_001180 cell division protein FtsZ 10092 11240 1
CDS - ZP_06154462.1 VDA_001181 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 11545 12432 1
CDS - ZP_06154463.1 VDA_001182 hypothetical protein 12538 12747 -1
CDS - ZP_06154464.1 VDA_001183 protein export cytoplasm protein SecA ATPase RNA helicase 13479 16199 1
CDS - ZP_06154465.1 VDA_001184 MutT protein [7,8-dihydro-8-oxoguanine-triphosphatase] 16361 16768 -1
CDS - ZP_06154466.1 VDA_001185 zinc-binding protein 16995 17204 -1
CDS - ZP_06154467.1 VDA_001186 hypothetical protein 17213 17950 -1
CDS - ZP_06154468.1 VDA_001187 dephospho-CoA kinase 18018 18620 -1
CDS - ZP_06154469.1 VDA_001188 leader peptidase (Prepilin peptidase)/N-methyltransferase 18622 19500 -1
CDS - ZP_06154470.1 VDA_001189 type 4 fimbrial assembly protein PilC 19683 20909 -1
CDS - ZP_06154471.1 VDA_001190 type 4 fimbrial assembly ATPase PilB 20975 22666 -1
CDS - ZP_06154472.1 VDA_001191 type IV pilin PilA 22667 23182 -1
CDS - ZP_06154473.1 VDA_001192 N-acetylmuramoyl-L-alanine amidase AmpD 23570 24148 1
CDS - ZP_06154474.1 VDA_001193 transcriptional repressor for pyruvate dehydrogenase complex 24508 25281 1
CDS - ZP_06154475.1 VDA_001194 pyruvate dehydrogenase E1 component 25362 28022 1
CDS - ZP_06154476.1 VDA_001195 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 28035 29912 1
CDS - ZP_06154477.1 VDA_001196 dihydrolipoamide dehydrogenase 30090 31520 1
CDS - ZP_06154478.1 VDA_001197 hypothetical protein 32162 34228 -1
CDS - ZP_06154479.1 VDA_001198 putative methyl-accepting chemotaxis protein 34420 36339 -1
CDS - ZP_06154480.1 VDA_001199 aconitate hydratase 2 36740 39337 1
CDS - ZP_06154481.1 VDA_001200 glycerate kinase 39448 40581 -1
CDS - ZP_06154482.1 VDA_001201 D-glycerate transporter, predicted 40592 41581 -1
CDS - ZP_06154483.1 VDA_001202 sugar diacid utilization regulator SdaR 41989 43146 -1
CDS - ZP_06154484.1 VDA_001203 hypothetical protein 43421 43570 1
CDS - ZP_06154485.1 VDA_001204 nitrogen regulatory protein P-II 43752 44090 1
CDS - ZP_06154486.1 VDA_001205 ammonium transporter 44154 45383 1
CDS - ZP_06154487.1 VDA_001206 ferric iron ABC transporter iron-binding protein 45574 46587 1
CDS - ZP_06154488.1 VDA_001207 ferric iron ABC transporter permease protein 46743 48368 1
CDS - ZP_06154489.1 VDA_001208 ferric iron ABC transporter ATP-binding protein 48368 49408 1
CDS - ZP_06154490.1 VDA_001209 quorum-sensing regulator of virulence HapR 49482 50078 -1
CDS - ZP_06154491.1 VDA_001210 hypoxanthine-guanine phosphoribosyltransferase 50299 50835 1
CDS - ZP_06154492.1 VDA_001211 carbonic anhydrase 50910 51581 -1
CDS - ZP_06154493.1 VDA_001212 hypothetical ABC transporter ATP-binding protein yadG 51680 52603 1
CDS - ZP_06154494.1 VDA_001213 ABC-type multidrug transport system permease component 52600 53370 1
CDS - ZP_06154495.1 VDA_001214 pantoate--beta-alanine ligase 53486 54376 -1
CDS - ZP_06154496.1 VDA_001215 3-methyl-2-oxobutanoate hydroxymethyltransferase 54386 55180 -1
CDS - ZP_06154497.1 VDA_001216 poly(A) polymerase 55688 56980 -1
CDS - ZP_06154498.1 VDA_001217 glutamyl-Q-tRNA synthetase 57193 58212 -1
CDS - ZP_06154499.1 VDA_001218 C4-type zinc finger protein, DksA/TraR family 58349 58798 -1
CDS - ZP_06154500.1 VDA_001219 sugar/maltose fermentation stimulation protein 58928 59641 -1
CDS - ZP_06154501.1 VDA_001220 ATP-dependent helicase HrpB 59865 62357 1
CDS - ZP_06154502.1 VDA_001221 multimodular transpeptidase-transglycosylase 62538 65081 1
tRNA - - VDA_rna013 tRNA-Thr 65338 65413 -1
tRNA - - VDA_rna014 tRNA-Asn 65466 65541 -1
tRNA - - VDA_rna015 tRNA-Phe 65546 65621 -1
tRNA - - VDA_rna016 tRNA-Thr 65679 65754 -1
tRNA - - VDA_rna017 tRNA-Asn 65807 65882 -1
tRNA - - VDA_rna018 tRNA-Phe 65887 65962 -1
tRNA - - VDA_rna019 tRNA-Thr 66020 66095 -1
tRNA - - VDA_rna020 tRNA-Asn 66148 66223 -1
tRNA - - VDA_rna021 tRNA-Phe 66264 66339 -1
tRNA - - VDA_rna022 tRNA-Thr 67427 67502 -1
tRNA - - VDA_rna023 tRNA-Asn 67555 67630 -1
tRNA - - VDA_rna024 tRNA-Phe 67635 67710 -1
tRNA - - VDA_rna025 tRNA-Thr 67768 67843 -1
tRNA - - VDA_rna026 tRNA-Asn 67896 67971 -1
tRNA - - VDA_rna027 tRNA-Phe 67976 68051 -1
tRNA - - VDA_rna028 tRNA-Thr 68109 68184 -1
tRNA - - VDA_rna029 tRNA-Asn 68237 68312 -1
tRNA - - VDA_rna030 tRNA-Phe 68353 68428 -1
CDS - ZP_06154503.1 VDA_001222 hypothetical protein 68640 68912 -1
CDS - ZP_06154504.1 VDA_001223 A/G-specific adenine glycosylase 69026 70096 -1
CDS - ZP_06154505.1 VDA_001224 tRNA(m7G46)-methyltransferase 70304 71041 1
CDS - ZP_06154506.1 VDA_001225 glutaminase 71160 72080 1
CDS - ZP_06154507.1 VDA_001226 coproporphyrinogen III oxidase, oxygen-independent 72606 73766 -1
CDS - ZP_06154508.1 VDA_001227 nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) 73766 74359 -1
CDS - ZP_06154509.1 VDA_001228 membrane protein 74757 75314 -1
CDS - ZP_06154510.1 VDA_001229 pyrroline-5-carboxylate reductase 75326 76144 -1
CDS - ZP_06154511.1 VDA_001230 hypothetical protein 76160 76861 -1
CDS - ZP_06154512.1 VDA_001231 twitching motility protein PilT 76884 77918 1
CDS - ZP_06154513.1 VDA_001232 type IV pilus (Tfp) assembly protein ATPase component PilU 77930 79036 1
CDS - ZP_06154514.1 VDA_001233 putative Holliday junction resolvase 79364 79789 -1
CDS - ZP_06154515.1 VDA_001234 hypothetical protein 79786 80349 -1
CDS - ZP_06154516.1 VDA_001235 glutathione synthetase 80503 81450 -1
CDS - ZP_06154517.1 VDA_001236 ribosomal RNA small subunit methyltransferase E 81471 82202 -1
CDS - ZP_06154518.1 VDA_001237 endonuclease I precursor 82334 83038 -1
CDS - ZP_06154519.1 VDA_001238 S-adenosylmethionine synthetase 83754 84908 -1
CDS - ZP_06154520.1 VDA_001239 transketolase 85326 87338 1
CDS - ZP_06154521.1 VDA_001240 D-erythrose-4-phosphate dehydrogenase 87584 88666 1
CDS - ZP_06154522.1 VDA_001241 phosphoglycerate kinase 88741 89904 1
CDS - ZP_06154523.1 VDA_001242 fructose-bisphosphate aldolase class II 90045 91121 1
CDS - ZP_06154524.1 VDA_001243 hypothetical protein 91470 92354 1
CDS - ZP_06154525.1 VDA_001244 hypothetical protein 93217 93945 1
CDS - ZP_06154526.1 VDA_001245 D-3-phosphoglycerate dehydrogenase 94013 95242 -1
CDS - ZP_06154527.1 VDA_001246 ribose 5-phosphate isomerase A 95533 96192 -1
CDS - ZP_06154528.1 VDA_001247 5-formyltetrahydrofolate cyclo-ligase 96394 96975 -1
CDS - ZP_06154529.1 VDA_001248 putative conserved exported protein precursor 98031 98504 1
CDS - ZP_06154530.1 VDA_001249 2-octaprenyl-6-methoxyphenol hydroxylase 98548 99735 1
CDS - ZP_06154531.1 VDA_001250 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 99738 100943 1
CDS - ZP_06154532.1 VDA_001251 hypothetical protein 102577 103050 1
CDS - ZP_06154533.1 VDA_001252 hypothetical protein 103095 103241 1
CDS - ZP_06154534.1 VDA_001253 hypothetical LysR-like regular protein 103333 104265 -1