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Photobacterium damselae subsp. damselae CIP 102761, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06156816.1 VDA_000275 NADH dehydrogenase subunit N 104 1816 1
CDS - ZP_06156817.1 VDA_000276 hydrogenase-4 component C 1816 2769 1
CDS - ZP_06156818.1 VDA_000277 hydrogenase 4 subunit 2779 4524 1
CDS - ZP_06156819.1 VDA_000278 formate hydrogenlyase subunit 7 5079 5942 1
CDS - ZP_06156820.1 VDA_000279 electron transport protein hydN 7242 7787 1
CDS - ZP_06156821.1 VDA_000280 formate dehydrogenase H 7822 9966 1
CDS - ZP_06156822.1 VDA_000281 formate hydrogenlyase transcriptional activator 10207 12426 1
CDS - ZP_06156823.1 VDA_000282 formate dehydrogenase chain D 12459 13289 1
CDS - ZP_06156824.1 VDA_000283 [NiFe] hydrogenase nickel incorporation-associated protein HypB 13645 14721 1
CDS - ZP_06156825.1 VDA_000284 transporter 14880 15485 1
CDS - ZP_06156826.1 VDA_000285 hypothetical protein 15581 16441 -1
CDS - ZP_06156827.1 VDA_000286 UPF0061 domain-containing protein 16523 17998 -1
CDS - ZP_06156828.1 VDA_000287 beta-lactamase CARB-3 precursor (Carbenicillinase 3) 18430 19062 1
CDS - ZP_06156829.1 VDA_000288 ABC-type Fe3+ transport system permease component 19250 20296 1
CDS - ZP_06156830.1 VDA_000289 ABC transporter ATPase subunit 20301 21095 1
CDS - ZP_06156831.1 VDA_000290 iron(III) ABC transporter solute-binding protein 21092 22114 1
CDS - ZP_06156832.1 VDA_000291 hypothetical protein 22265 22645 1
CDS - ZP_06156833.1 VDA_000292 hypothetical Ap4A phosphorylase II 22669 23475 1
CDS - ZP_06156834.1 VDA_000293 arylesterase precursor 24028 24630 -1
CDS - ZP_06156835.1 VDA_000294 putative ABC transporter ATP-binding protein 24629 25309 1
CDS - ZP_06156836.1 VDA_000295 hypothetical permease 25306 27783 1
CDS - ZP_06156837.1 VDA_000296 hypothetical protein 28421 29248 -1
CDS - ZP_06156838.1 VDA_000297 hypothetical protein 29736 31601 -1
CDS - ZP_06156839.1 VDA_000298 arginine decarboxylase catabolic 32490 34769 1
CDS - ZP_06156840.1 VDA_000299 pantothenate:Na+ symporter 34892 36304 -1
CDS - ZP_06156841.1 VDA_000300 integral membrane protein 36367 37299 -1
tRNA - - VDA_rna002 tRNA-Ser 37865 37955 1
tRNA - - VDA_rna003 tRNA-Asp 37998 38074 1
CDS - ZP_06156842.1 VDA_000301 transcriptional regulator 38192 39097 -1
CDS - ZP_06156843.1 VDA_000302 urease accessory protein UreG 39211 39831 -1
CDS - ZP_06156844.1 VDA_000303 urease accessory protein UreF 39844 40509 -1
CDS - ZP_06156845.1 VDA_000304 urease accessory protein UreE 40539 40823 -1
CDS - ZP_06156846.1 VDA_000305 urease alpha subunit 41015 42718 -1
CDS - ZP_06156847.1 VDA_000306 urease gamma subunit 43045 43218 -1
CDS - ZP_06156848.1 VDA_000307 urease accessory protein UreD 43372 44220 -1
CDS - ZP_06156849.1 VDA_000308 nickel ABC transporter nickel-binding protein nikA2 44741 46315 1
CDS - ZP_06156850.1 VDA_000309 binding-protein-dependent transport systems inner membrane component 46306 47268 1
CDS - ZP_06156851.1 VDA_000310 dipeptide transport system permease protein DppC 47265 48062 1
CDS - ZP_06156852.1 VDA_000311 oligopeptide transport ATP-binding protein OppD 48049 48744 1
CDS - ZP_06156853.1 VDA_000312 putative dipeptide ABC transporter 48737 49333 1
CDS - ZP_06156854.1 VDA_000313 hexose phosphate transport protein 49405 50781 -1
CDS - ZP_06156855.1 VDA_000314 arsenical-resistance protein ACR3 51118 52191 -1
CDS - ZP_06156856.1 VDA_000315 metal-dependent hydrolase 52952 54769 1
CDS - ZP_06156857.1 VDA_000316 MSHA pilin protein MshA 55690 56247 -1
CDS - ZP_06156858.1 VDA_000317 transcriptional regulator LysR family 56353 57255 -1
CDS - ZP_06156859.1 VDA_000318 predicted D-lactate dehydrogenase Fe-S protein FAD/FMN-containing 57416 60241 1
CDS - ZP_06156860.1 VDA_000319 hypothetical protein 60715 62919 1
CDS - ZP_06156861.1 VDA_000320 transposase OrfAB subunit B 63791 64468 1
CDS - ZP_06156862.1 VDA_000321 hypothetical protein 64592 65797 1
CDS - ZP_06156863.1 VDA_000322 murine toxin 65860 67716 1
CDS - ZP_06156864.1 VDA_000323 hypothetical protein 68374 68997 1
CDS - ZP_06156865.1 VDA_000324 hypothetical amidinotransferase family protein 69593 70825 -1
CDS - ZP_06156866.1 VDA_000325 transcriptional regulator AraC family 71506 72432 1
CDS - ZP_06156867.1 VDA_000326 peptidase T2 asparaginase 2 72538 73464 -1
CDS - ZP_06156868.1 VDA_000327 cytosol aminopeptidase PepA 73479 74852 -1
CDS - ZP_06156869.1 VDA_000328 (GlcNAc)2 ABC transporter permease component 2 74868 75890 -1
CDS - ZP_06156870.1 VDA_000329 (GlcNAc)2 ABC transporter permease component 1 75893 76879 -1
CDS - ZP_06156871.1 VDA_000330 (GlcNAc)2 ABC transporter: substrate-binding protein 76969 78636 -1
CDS - ZP_06156872.1 VDA_000331 beta-mannosidase 78885 81389 -1
CDS - ZP_06156873.1 VDA_000332 putative ARAC-type regulatory protein 81618 82460 -1
CDS - ZP_06156874.1 VDA_000333 fructose-like phosphotransferase enzyme IIB component 2 (PTS system fructose-like EIIB component 2) 82768 83082 -1
CDS - ZP_06156875.1 VDA_000334 PTS system fructose-specific IIC component 83117 84121 -1
tRNA - - VDA_rna004 tRNA-Ser 84578 84668 1
CDS - ZP_06156876.1 VDA_000335 nucleotidyltransferase 84927 86150 -1
CDS - ZP_06156877.1 VDA_000336 hypothetical protein 86710 87849 -1
CDS - ZP_06156878.1 VDA_000337 hypothetical protein 88503 88766 1
CDS - ZP_06156879.1 VDA_000338 MSHA pilin protein MshA 88984 89568 1
CDS - ZP_06156880.1 VDA_000339 hypothetical protein 89723 91072 1
CDS - ZP_06156881.1 VDA_000340 hypothetical protein 91147 92454 1
CDS - ZP_06156882.1 VDA_000341 ABC transporter periplasmic spermidine putrescine-binding protein PotD 92508 93539 -1
CDS - ZP_06156883.1 VDA_000342 oxidoreductase 93735 95015 1
tRNA - - VDA_rna005 tRNA-Ser 95154 95244 1
CDS - ZP_06156884.1 VDA_000343 5'-nucleotidase 95711 97378 1
CDS - ZP_06156885.1 VDA_000344 hypothetical protein 97531 98166 1
CDS - ZP_06156886.1 VDA_000345 hypothetical protein 98262 98408 -1
CDS - ZP_06156887.1 VDA_000346 putative Cold shock-like protein 98810 99019 1
CDS - ZP_06156888.1 VDA_000347 hypothetical protein 99194 99853 1
CDS - ZP_06156889.1 VDA_000348 hypothetical permease 99850 100617 1
CDS - ZP_06156890.1 VDA_000349 hypothetical protein 100791 101279 1
CDS - ZP_06156891.1 VDA_000350 MOSC domain protein 101509 102189 1
CDS - ZP_06156892.1 VDA_000351 cysteine desulfurase 102236 103477 -1
CDS - ZP_06156893.1 VDA_000352 hypothetical protein 103455 104087 -1
CDS - ZP_06156894.1 VDA_000353 hypothetical protein 104296 106875 -1
CDS - ZP_06156895.1 VDA_000354 di-/tripeptide transporter 107529 108989 1
CDS - ZP_06156896.1 VDA_000355 hypothetical protein 109230 110228 1
CDS - ZP_06156897.1 VDA_000356 lysophospholipase L2 110235 111206 1
CDS - ZP_06156898.1 VDA_000357 hypothetical protein 111294 112163 -1
CDS - ZP_06156899.1 VDA_000358 hypothetical protein 112380 113156 1
CDS - ZP_06156900.1 VDA_000359 thioredoxin 2 113243 113677 -1
CDS - ZP_06156901.1 VDA_000360 hypothetical protein 113948 114145 -1
tRNA - - VDA_rna006 tRNA-Ser 114566 114656 1
CDS - ZP_06156902.1 VDA_000361 endoribonuclease L-PSP 115117 116382 1
CDS - ZP_06156903.1 VDA_000362 sensory box/GGDEF family protein 116777 118429 1
CDS - ZP_06156904.1 VDA_000363 putative alpha-1,2-mannosidase 118669 121065 1
CDS - ZP_06156905.1 VDA_000364 uroporphyrinogen-III methyltransferase 121121 121882 -1
CDS - ZP_06156906.1 VDA_000365 nitrite transporter NirC 121904 122722 -1
CDS - ZP_06156907.1 VDA_000366 nitrite reductase [NAD(P)H] large subunit 123165 125729 -1
CDS - ZP_06156908.1 VDA_000367 siroheme synthase/precorrin-2 oxidase/sirohydrochlorin ferrochelatase 125894 126841 -1
CDS - ZP_06156909.1 VDA_000368 putative outer membrane protein 127055 127609 -1
CDS - ZP_06156910.1 VDA_000369 transcriptional regulator LysR family 127790 128677 1