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Photobacterium damselae subsp. damselae CIP 102761, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_06157709.1 VDA_000163 hypothetical protein 990 1664 -1
CDS - ZP_06157710.1 VDA_000164 sex pilus assembly and synthesis protein TraW 2313 3083 -1
CDS - ZP_06157711.1 VDA_000165 IncF plasmid conjugative transfer pilus assembly protein TraC 4265 6343 -1
CDS - ZP_06157712.1 VDA_000166 TraB pilus assembly 6816 8030 -1
CDS - ZP_06157713.1 VDA_000167 IncF plasmid conjugative transfer pilus assembly protein TraK 8034 8765 -1
CDS - ZP_06157714.1 VDA_000168 hypothetical protein 9604 9735 -1
CDS - ZP_06157715.1 VDA_000169 hypothetical protein 12337 13149 1
CDS - ZP_06157716.1 VDA_000170 transposase 14090 15184 -1
CDS - ZP_06157717.1 VDA_000171 transposase 15342 16436 -1
CDS - ZP_06157718.1 VDA_000172 resolvase 17213 17824 -1
CDS - ZP_06157719.1 VDA_000173 hypothetical protein 17832 18662 -1
CDS - ZP_06157720.1 VDA_000174 Tn5044 transposase 18901 19440 1
CDS - ZP_06157721.1 VDA_000175 TnpA 19522 21870 1
CDS - ZP_06157722.1 VDA_000176 magnesium transporting ATPase P-type 1 24906 26888 -1
CDS - ZP_06157723.1 VDA_000177 hypothetical protein 26839 27333 1
CDS - ZP_06157724.1 VDA_000178 transposase 29851 32898 1
CDS - ZP_06157725.1 VDA_000179 chromosome (plasmid) partitioning protein ParA 34449 35615 1
CDS - ZP_06157726.1 VDA_000180 chromosome (plasmid) partitioning protein ParB 35615 36664 1
CDS - ZP_06157727.1 VDA_000181 type III secretion cytoplasmic protein (YscL) 38455 39090 -1
CDS - ZP_06157728.1 VDA_000182 type III secretion cytoplasmic protein (YscK) 39069 39734 -1
CDS - ZP_06157729.1 VDA_000183 type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) 39727 40524 -1
CDS - ZP_06157730.1 VDA_000184 putative type III export protein 40880 41401 -1
CDS - ZP_06157731.1 VDA_000185 putative type III secretion protein 41401 41607 -1
CDS - ZP_06157732.1 VDA_000186 type III export protein YscF 41761 42009 -1
CDS - ZP_06157733.1 VDA_000187 type III secretion inner membrane protein YscD 42219 43520 -1
CDS - ZP_06157734.1 VDA_000188 type III secretion system outer membrane pore YscC 43526 45400 -1
CDS - ZP_06157735.1 VDA_000189 hypothetical protein 45841 46818 -1
CDS - ZP_06157736.1 VDA_000190 type III secretion host injection and negative regulator protein (YopD) 47821 48681 -1
CDS - ZP_06157737.1 VDA_000191 type III secretion host injection protein (YopB) 48691 49812 -1
CDS - ZP_06157738.1 VDA_000192 type III secretion LcrG inhibitor (LcrV,secretion and targeting control protein V antigen) 50320 52146 -1
CDS - ZP_06157739.1 VDA_000193 Type III secretion inner membrane channel protein 52920 55043 -1
CDS - ZP_06157740.1 VDA_000194 type III secretion system effector delivery regulator TyeA 56115 56303 -1
CDS - ZP_06157741.1 VDA_000195 type III secretion regulator YopN 56380 57273 -1
CDS - ZP_06157742.1 VDA_000196 Type III secretion cytoplasmic ATP synthase 57518 58783 1
CDS - ZP_06157743.1 VDA_000197 type III secretion spans bacterial envelope protein (YscO) 59068 59241 1
CDS - ZP_06157744.1 VDA_000198 type III secretion protein (YscP) 59251 60579 1
CDS - ZP_06157745.1 VDA_000199 type III secretion inner membrane protein YscQ 60579 61544 1
CDS - ZP_06157746.1 VDA_000200 yop virulence translocation protein R 61541 62191 1
CDS - ZP_06157747.1 VDA_000201 type III secretion protein SpaR 62468 63250 1
CDS - ZP_06157748.1 VDA_000202 type III secretion inner membrane protein HrpY 63269 64327 1
CDS - ZP_06157749.1 VDA_000203 putative protein-tyrosine phosphatase Aop effector AopH 65127 66845 1
CDS - ZP_06157750.1 VDA_000204 hypothetical protein 68672 69733 -1
CDS - ZP_06157751.1 VDA_000205 hypothetical protein 70497 70691 -1
CDS - ZP_06157752.1 VDA_000206 hypothetical protein 71352 73022 -1
CDS - ZP_06157753.1 VDA_000207 putative transposase 73757 74413 1
CDS - ZP_06157754.1 VDA_000208 type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) 74597 75478 -1
CDS - ZP_06157755.1 VDA_000209 outer membrane protein 77842 78663 -1
CDS - ZP_06157756.1 VDA_000210 DNA-binding response regulator 80503 81213 1
CDS - ZP_06157757.1 VDA_000211 putative transposase 81422 82108 -1
CDS - ZP_06157758.1 VDA_000212 hypothetical protein 82137 82256 -1
CDS - ZP_06157759.1 VDA_000213 hypothetical protein 83103 84269 1
CDS - ZP_06157760.1 VDA_000214 hypothetical protein 84297 86024 1
CDS - ZP_06157761.1 VDA_000215 hypothetical protein 86200 87195 -1
CDS - ZP_06157762.1 VDA_000216 transposase 88915 89946 -1
CDS - ZP_06157763.1 VDA_000217 hypothetical protein 90427 91575 1
CDS - ZP_06157764.1 VDA_000218 Riorf46 protein 91888 93201 1
CDS - ZP_06157765.1 VDA_000219 putative superfamily I DNA helicase 93375 96893 -1
CDS - ZP_06157766.1 VDA_000220 putative transposase 97236 97922 1
CDS - ZP_06157767.1 VDA_000221 putative inner membrane protein 98776 100290 -1
CDS - ZP_06157768.1 VDA_000222 iSPsy3 transposase 100761 101462 -1
CDS - ZP_06157769.1 VDA_000223 hydrophilic protein virA protein 105099 105800 1
CDS - ZP_06157770.1 VDA_000224 putative protein-tyrosine phosphatase Aop effector AopH 107984 109702 -1
CDS - ZP_06157771.1 VDA_000225 putative transposase 110234 110701 1
CDS - ZP_06157772.1 VDA_000226 ADP-ribosyltransferase toxin aexT (Exoenzyme T) 110913 112457 -1
CDS - ZP_06157773.1 VDA_000227 site-specific recombinase resolvase family 116681 117310 -1
CDS - ZP_06157774.1 VDA_000228 putative transposase 117607 118293 1
CDS - ZP_06157775.1 VDA_000229 hypothetical protein 118491 119525 1
CDS - ZP_06157776.1 VDA_000230 hypothetical protein 120072 120860 1
CDS - ZP_06157777.1 VDA_000231 ribonucleoside-diphosphate reductase alpha subunit 121397 123586 1
CDS - ZP_06157778.1 VDA_000232 ribonucleotide reductase 2 123639 124571 1
CDS - ZP_06157779.1 VDA_000233 predicted manganese transporter 11 TMS 124883 126094 -1
CDS - ZP_06157780.1 VDA_000234 transposase 126804 127127 -1
CDS - ZP_06157781.1 VDA_000235 transposase OrfAB subunit B 128173 128850 1
CDS - ZP_06157782.1 VDA_000236 iSPsy3 transposase 130877 131947 -1
CDS - ZP_06157783.1 VDA_000237 hypothetical protein 132751 133323 1
CDS - ZP_06157784.1 VDA_000238 transposase 133478 134104 -1
CDS - ZP_06157785.1 VDA_000239 putative transposase 134105 134686 -1
CDS - ZP_06157786.1 VDA_000240 hypothetical protein 134695 134889 -1
CDS - ZP_06157787.1 VDA_000241 transposase 137599 138630 -1
CDS - ZP_06157788.1 VDA_000242 transposase 139944 141152 1
CDS - ZP_06157789.1 VDA_000243 Riorf46 protein 141812 143176 1
CDS - ZP_06157790.1 VDA_000244 chromosome partitioning protein ParA 143689 144345 1
CDS - ZP_06157791.1 VDA_000245 transposase 144702 145910 -1
CDS - ZP_06157792.1 VDA_000246 ribonucleotide reductase of class Ia (aerobic) alpha subunit 146769 148712 1
CDS - ZP_06157793.1 VDA_000247 transposase 148699 151101 -1
CDS - ZP_06157794.1 VDA_000248 resolvase 151830 152471 1
CDS - ZP_06157795.1 VDA_000249 hypothetical protein 152896 153090 -1
CDS - ZP_06157796.1 VDA_000250 cytotoxic necrotizing factor 1 153341 156454 -1
CDS - ZP_06157797.1 VDA_000251 N-acetylmuramoyl-L-alanine amidase 158694 159464 1
CDS - ZP_06157798.1 VDA_000252 hypothetical protein 161612 162787 -1
CDS - ZP_06157799.1 VDA_000253 hypothetical protein 163232 166534 -1
CDS - ZP_06157800.1 VDA_000254 Riorf46 protein 166814 168166 1
CDS - ZP_06157801.1 VDA_000255 extensin-like protein:NEAr transporter 170153 171811 1
CDS - ZP_06157802.1 VDA_000256 putative transposase 172247 172933 1
CDS - ZP_06157803.1 VDA_000257 hypothetical protein 173676 174275 1
CDS - ZP_06157804.1 VDA_000258 hypothetical protein 174802 175557 1
CDS - ZP_06157805.1 VDA_000259 hypothetical protein 175973 176104 1
CDS - ZP_06157806.1 VDA_000260 antirestriction protein 176122 176952 1
CDS - ZP_06157807.1 VDA_000261 DNA-binding protein H-NS 177152 177451 -1
CDS - ZP_06157808.1 VDA_000262 hypothetical protein 178220 178765 1