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Photobacterium profundum 3TCK, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - P3TCK_r24381 23S ribosomal RNA 1 723 1
rRNA - - P3TCK_r24379 5S ribosomal RNA 829 956 1
tRNA - - P3TCK_t24377 tRNA-Asp 987 1060 1
CDS - ZP_01220957.1 P3TCK_23945 putative Na+/H+ antiporter 1939 3219 -1
CDS - ZP_01220958.1 P3TCK_23950 putative cobalamin-dependent methionine synthase 3414 7085 1
CDS - ZP_01220959.1 P3TCK_23955 aspartate kinase III 7157 8536 -1
CDS - ZP_01220960.1 P3TCK_23960 putative Serine-pyruvate aminotransferase/archaeal aspartateaminotransferase 9104 10222 1
CDS - ZP_01220961.1 P3TCK_23965 hypothetical protein 10304 12073 -1
CDS - ZP_01220962.1 P3TCK_23970 excinuclease ABC subunit A 12156 14981 -1
CDS - ZP_01220963.1 P3TCK_23975 single-strand DNA-binding protein 15344 15892 1
CDS - ZP_01220964.1 P3TCK_23980 transcriptional regulator 15965 16873 -1
CDS - ZP_01220965.1 P3TCK_23985 putative MSHA biogenesis protein MshH 17118 19043 1
CDS - ZP_01220966.1 P3TCK_23990 hypothetical MSHA biogenesis protein MshI 19201 20676 1
CDS - ZP_01220967.1 P3TCK_23995 hypothetical MSHA biogenesis protein MshJ 20673 21308 1
CDS - ZP_01220968.1 P3TCK_24000 hypothetical MSHA biogenesis protein MshK 21301 21633 1
CDS - ZP_01220969.1 P3TCK_24005 putative MSHA biogenesis protein MshL 21643 23322 1
CDS - ZP_01220970.1 P3TCK_24010 hypothetical type II secretory pathway, component ExeA 23326 24168 1
CDS - ZP_01220971.1 P3TCK_24015 hypothetical protein 24171 25394 1
CDS - ZP_01220972.1 P3TCK_24020 putative MSHA biogenesis protein MshE 25399 27111 1
CDS - ZP_01220973.1 P3TCK_24025 putative MSHA biogenesis protein MshG 27122 28342 1
CDS - ZP_01220974.1 P3TCK_24030 hypothetical protein 28323 28808 1
CDS - ZP_01220975.1 P3TCK_24035 putative MSHA pilin protein MshB 28833 29423 1
CDS - ZP_01220976.1 P3TCK_24040 putative MSHA pilin protein MshA 29437 29919 1
CDS - ZP_01220977.1 P3TCK_24045 hypothetical protein 30050 30520 1
CDS - ZP_01220978.1 P3TCK_24050 MshD 30510 31058 1
CDS - ZP_01220979.1 P3TCK_24055 MshO 31058 31846 1
CDS - ZP_01220980.1 P3TCK_24060 hypothetical protein 31836 32270 1
CDS - ZP_01220981.1 P3TCK_24065 MshQ 32263 37017 1
CDS - ZP_01220982.1 P3TCK_24070 putative MreB, Actin-like ATPase involved in cell morphogenesis 37212 38255 1
CDS - ZP_01220983.1 P3TCK_24075 putative rod shape-determining protein MreC 38296 39156 1
CDS - ZP_01220984.1 P3TCK_24080 hypothetical rod shape-determining protein MreD 39146 39634 1
CDS maf ZP_01220985.1 P3TCK_24085 Maf-like protein 39740 40330 1
CDS - ZP_01220986.1 P3TCK_24090 putative ribonuclease G and E 40343 41812 1
CDS - ZP_01220987.1 P3TCK_24095 hypothetical membrane protein 41833 45726 1
CDS - ZP_01220988.1 P3TCK_24100 putative carbon-nitrogen hydrolase 45772 46590 1
CDS - ZP_01220989.1 P3TCK_24105 putative TldD 46609 48054 1
CDS - ZP_01220990.1 P3TCK_24110 hypothetical protein 48156 48680 -1
CDS - ZP_01220991.1 P3TCK_24115 putative pmbA protein 48804 50147 1
CDS - ZP_01220992.1 P3TCK_24120 putative magnesium transporter 50274 51632 -1
CDS - ZP_01220993.1 P3TCK_24125 putative phosphocarrier protein NPr 51853 52128 -1
CDS - ZP_01220994.1 P3TCK_24130 hypothetical protein 52128 52976 -1
CDS - ZP_01220995.1 P3TCK_24135 putative nitrogen regulatory IIA protein PtsN 53013 53462 -1
CDS - ZP_01220996.1 P3TCK_24140 putative sigma-54 modulation protein 53465 53752 -1
CDS - ZP_01220997.1 P3TCK_24145 DNA-directed RNA polymerase subunit N 53779 55293 -1
CDS - ZP_01220998.1 P3TCK_24150 putative ABC transporter, ATP-binding protein 55347 56072 -1
CDS - ZP_01220999.1 P3TCK_24155 hypothetical protein yhbN precursor 56082 56585 -1
CDS - ZP_01221000.1 P3TCK_24160 hypothetical protein 56566 57129 -1
CDS - ZP_01221001.1 P3TCK_24165 putative low specificity phosphatase 57126 57683 -1
CDS - ZP_01221002.1 P3TCK_24170 hypothetical sugar phosphate isomerase 57683 58654 -1
CDS - ZP_01221003.1 P3TCK_24175 putative Ca2+/Na+ antiporter 58667 59632 -1
CDS - ZP_01221004.1 P3TCK_24180 putative ABC transporter, ATP-binding protein 60129 60944 1
CDS - ZP_01221005.1 P3TCK_24185 hypothetical protein 61164 61946 1
CDS - ZP_01221006.1 P3TCK_24190 putative ABC superfamily transport protein 62014 62514 1
CDS - ZP_01221007.1 P3TCK_24195 hypothetical protein 62526 63170 1
CDS - ZP_01221008.1 P3TCK_24200 hypothetical anti-sigma B factor antagonist 63163 63474 1
CDS - ZP_01221009.1 P3TCK_24205 putative BolA/YrbA family protein, transcriptional regulator 63494 63748 1
CDS - ZP_01221010.1 P3TCK_24210 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 63759 65015 1
CDS - ZP_01221011.1 P3TCK_24215 putative DegS serine protease 65114 66202 -1
CDS - ZP_01221012.1 P3TCK_24220 hypothetical protein 66205 66450 1
CDS - ZP_01221013.1 P3TCK_24225 putative DegQ serine protease 66466 67836 -1
CDS - ZP_01221014.1 P3TCK_24230 hypothetical protein 67987 68424 -1
CDS - ZP_01221015.1 P3TCK_24235 hypothetical ATPase 68603 69706 1
CDS - ZP_01221016.1 P3TCK_24240 50S ribosomal protein L13 69994 70422 1
CDS - ZP_01221017.1 P3TCK_24245 putative 30S ribosomal subunit protein S9 70438 70830 1
CDS - ZP_01221018.1 P3TCK_24250 putative ubiquinol-cytochrome c reductase, iron-sulfur subunit 71160 71750 1
CDS - ZP_01221019.1 P3TCK_24255 putative Ubiquinol-cytochrome c reductase, cytochrome B 71750 73015 1
CDS - ZP_01221020.1 P3TCK_24260 putative ubiquinol--cytochrome c reductase, cytochrome c1 73012 73749 1
CDS - ZP_01221021.1 P3TCK_24265 putative stringent starvation protein A 73837 74475 1
CDS - ZP_01221022.1 P3TCK_24270 putative stringent starvation protein B 74476 74982 1
CDS - ZP_01221023.1 P3TCK_24275 hypothetical hemolysin 75042 75581 -1
CDS - ZP_01221024.1 P3TCK_24280 putative phosphoheptose isomerase 75585 76175 -1
CDS - ZP_01221025.1 P3TCK_24285 hypothetical protein 76178 76501 -1
CDS - ZP_01221026.1 P3TCK_24290 hypothetical lipoprotein 76530 78362 -1
CDS - ZP_01221027.1 P3TCK_24295 putative methyltransferase 78445 79284 1
CDS - ZP_01221028.1 P3TCK_24300 hypothetical protein 79429 79671 -1
CDS mraW ZP_01221029.1 P3TCK_24305 S-adenosyl-methyltransferase 79625 79759 -1
CDS - ZP_01221030.1 P3TCK_24310 putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis 80364 81311 1
CDS - ZP_01221031.1 P3TCK_24315 putative cell division protein FtsL 81308 81628 1
CDS - ZP_01221032.1 P3TCK_24320 putative division protein FtsI; penicillin-binding protein 81632 83386 1
CDS - ZP_01221033.1 P3TCK_24325 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 83401 84921 1
CDS - ZP_01221034.1 P3TCK_24330 hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase 84918 86324 1
CDS - ZP_01221035.1 P3TCK_24335 phospho-N-acetylmuramoyl-pentapeptide- transferase 86321 87403 1
CDS murD ZP_01221036.1 P3TCK_24340 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 87404 88747 1
CDS - ZP_01221037.1 P3TCK_24345 putative cell division protein FtsW 88741 89976 1
CDS murG ZP_01221038.1 P3TCK_24350 N-acetylglucosaminyl transferase 89963 91027 1
CDS - ZP_01221039.1 P3TCK_24355 UDP-N-acetylmuramate--L-alanine ligase 91043 92503 1
CDS - ZP_01221040.1 P3TCK_24360 hypothetical cell division protein FtsQ 92774 93535 1
CDS - ZP_01221041.1 P3TCK_24365 putative cell division protein FtsA 93551 94807 1
CDS - ZP_01221042.1 P3TCK_24370 cell division protein FtsZ 94841 95466 1