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Pseudoalteromonas tunicata D2, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - PTD2_r09339 23S ribosomal RNA 253 3142 1
rRNA - - PTD2_r09337 5S ribosomal RNA 3270 3388 1
CDS - ZP_01133222.1 PTD2_06254 transporter, drug/metabolite exporter family protein 4171 5148 -1
CDS - ZP_01133223.1 PTD2_06259 hypothetical protein 5276 5635 1
CDS - ZP_01133224.1 PTD2_06264 heavy metal efflux system protein, putative 5699 6949 1
CDS - ZP_01133225.1 PTD2_06269 heavy metal efflux pump, CzcA family protein 6963 10070 1
CDS - ZP_01133226.1 PTD2_06274 putative Xaa-Pro aminopeptidase 10227 11306 1
CDS - ZP_01133227.1 PTD2_06279 ornithine cyclodeaminase 11316 12266 1
CDS - ZP_01133228.1 PTD2_06284 putative orphan protein 12390 12791 1
CDS - ZP_01133229.1 PTD2_06289 bifunctional protein 13044 15641 1
CDS - ZP_01133230.1 PTD2_06294 hypothetical protein 15749 16480 -1
CDS - ZP_01133231.1 PTD2_06299 hypothetical protein 16574 17323 -1
CDS - ZP_01133232.1 PTD2_06304 alcohol dehydrogenase, zinc-containing 17440 18453 -1
CDS - ZP_01133233.1 PTD2_06309 hypothetical protein 18523 18621 1
CDS - ZP_01133234.1 PTD2_06314 hypothetical protein 18636 19253 1
CDS - ZP_01133235.1 PTD2_06319 hypothetical protein 19246 20322 1
CDS - ZP_01133236.1 PTD2_06324 hypothetical protein 20364 20987 -1
CDS - ZP_01133237.1 PTD2_06329 acetyltransferase, GNAT family protein 20987 21577 -1
CDS - ZP_01133238.1 PTD2_06334 transcriptional regulator, GntR family protein 21667 23151 1
CDS - ZP_01133239.1 PTD2_06339 hypothetical protein 23194 23646 1
CDS - ZP_01133240.1 PTD2_06344 putative metalloprotease; probable metal binding site 23762 24820 1
CDS - ZP_01133241.1 PTD2_06349 predicted exonuclease of the beta-lactamase fold involved in RNA processing 24944 26326 -1
CDS - ZP_01133242.1 PTD2_06354 hypothetical protein 26607 26828 1
CDS - ZP_01133243.1 PTD2_06359 hypothetical protein 26884 27816 -1
CDS - ZP_01133244.1 PTD2_06364 hypothetical protein 28055 28219 -1
CDS - ZP_01133245.1 PTD2_06369 TonB-dependent receptor 28269 31142 1
CDS - ZP_01133246.1 PTD2_06374 TonB-dependent receptor 31834 34881 1
CDS - ZP_01133247.1 PTD2_06379 TonB-dependent receptor 35569 38442 1
CDS - ZP_01133248.1 PTD2_06384 hypothetical protein 38564 38953 1
CDS - ZP_01133249.1 PTD2_06389 hypothetical protein 39067 40059 -1
CDS - ZP_01133250.1 PTD2_06394 hypothetical protein 40153 40614 -1
CDS - ZP_01133251.1 PTD2_06399 response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) protein 40649 42037 -1
CDS - ZP_01133252.1 PTD2_06404 nitrogen availability sensory kinase (soluble) in two-component regulatory system with GlnG, nitrogen regulation 42063 43139 -1
CDS - ZP_01133253.1 PTD2_06409 hypothetical protein 43266 43787 -1
CDS glnA ZP_01133254.1 PTD2_06414 glutamine synthetase 43919 45325 -1
CDS - ZP_01133255.1 PTD2_06419 hypothetical protein 45405 45560 -1
CDS - ZP_01133256.1 PTD2_06424 GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A); involved in LPS core synthesis 45848 47668 1
CDS - ZP_01133257.1 PTD2_06429 hypothetical protein 47744 48388 -1
CDS - ZP_01133258.1 PTD2_06434 tRNA processing exoribonuclease BN 48501 49385 1
CDS - ZP_01133259.1 PTD2_06439 Peptidase S33, proline iminopeptidase 1 49394 50392 1
CDS - ZP_01133260.1 PTD2_06444 D-Tyr-tRNA(Tyr) deacylase; removes other D-aminoacids from mischarged tRNA 50396 50833 1
CDS - ZP_01133261.1 PTD2_06449 hypothetical protein 50822 51511 -1
CDS - ZP_01133262.1 PTD2_06454 putative acyltransferase 51670 52578 1
CDS - ZP_01133263.1 PTD2_06459 putative outer membrane phospholipase A precursor 52688 53710 -1
CDS - ZP_01133264.1 PTD2_06464 hypothetical protein 53975 55087 -1
CDS - ZP_01133265.1 PTD2_06469 diaminopimelate decarboxylase, PLP-binding protein 55092 56297 -1
CDS - ZP_01133266.1 PTD2_06474 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 56297 57037 -1
CDS dapA ZP_01133267.1 PTD2_06479 dihydrodipicolinate synthase 57049 57948 -1
CDS - ZP_01133268.1 PTD2_06484 hypothetical protein 57952 58227 1
CDS - ZP_01133269.1 PTD2_06489 Secreted protein containing internal repeats 58494 59168 -1
CDS - ZP_01133270.1 PTD2_06494 acetolactate synthase II large subunit 59660 61309 1
CDS - ZP_01133271.1 PTD2_06499 acetolactate synthase II, small subunit 61306 61545 1
CDS - ZP_01133272.1 PTD2_06504 branched-chain amino acid aminotransferase 61599 62522 1
CDS - ZP_01133273.1 PTD2_06509 dihydroxyacid dehydratase; possibly homodimieric 62593 64449 1
CDS - ZP_01133274.1 PTD2_06514 threonine deaminase 64451 65992 1
CDS - ZP_01133275.1 PTD2_06519 hypothetical protein 66130 67173 1
CDS - ZP_01133276.1 PTD2_06524 hypothetical protein 67285 68463 1
CDS - ZP_01133277.1 PTD2_06529 beta-carbonic anhydrase 68476 69132 1
CDS - ZP_01133278.1 PTD2_06534 hypothetical protein 69263 69514 -1
CDS - ZP_01133279.1 PTD2_06539 Rep helicase, a single-stranded DNA-dependent ATPase 69694 71709 1
CDS - ZP_01133280.1 PTD2_06544 putative GGDEF domain protein 71706 74282 -1
CDS - ZP_01133281.1 PTD2_06549 Cytochrome c5 74420 74815 -1
CDS - ZP_01133282.1 PTD2_06554 hypothetical Zn-dependent peptidase 75062 76516 1
CDS - ZP_01133283.1 PTD2_06559 hypothetical protein 76500 77933 1
CDS - ZP_01133284.1 PTD2_06564 putative sigma cross-reacting protein 27A 77980 78636 -1
CDS - ZP_01133285.1 PTD2_06569 multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) 79088 81838 1
CDS - ZP_01133286.1 PTD2_06574 GTP-binding protein 82129 82788 -1
CDS - ZP_01133287.1 PTD2_06579 Cytochrome c4 83090 83722 1
CDS - ZP_01133288.1 PTD2_06584 hypothetical protein 83797 84501 -1
CDS - ZP_01133289.1 PTD2_06589 hypothetical protein 84525 84914 1
CDS - ZP_01133290.1 PTD2_06594 hypothetical protein 84952 85845 -1
CDS - ZP_01133291.1 PTD2_06599 hypothetical protein 85858 86838 -1
CDS - ZP_01133292.1 PTD2_06604 DNA excision repair enzyme subunit, with UvrBC 86863 89682 -1
CDS - ZP_01133293.1 PTD2_06609 putative transporter (MFS family) protein 89993 91288 1
CDS - ZP_01133294.1 PTD2_06614 Single-strand binding protein (SSB) (Helix-destabilizing protein) 91307 92023 1
CDS - ZP_01133295.1 PTD2_06619 putative cation transporter component 92136 92948 1
CDS - ZP_01133296.1 PTD2_06624 protein with EAL domain 93052 94758 1
CDS - ZP_01133297.1 PTD2_06629 putative D-cysteine desulfhydrase, PLP-dependent enzyme 94783 95679 -1
CDS - ZP_01133298.1 PTD2_06634 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV)with frame shift 95786 96724 1
CDS - ZP_01133299.1 PTD2_06639 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV) with frame shift 96714 97301 1
CDS - ZP_01133300.1 PTD2_06644 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV) 97298 97948 1
CDS - ZP_01133301.1 PTD2_06649 hypothetical protein 97926 98249 1
CDS - ZP_01133302.1 PTD2_06654 MSHA biogenesis protein MshL 98233 99924 1
CDS - ZP_01133303.1 PTD2_06659 hypothetical protein 99925 100041 -1
CDS - ZP_01133304.1 PTD2_06664 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshM (pilus type IV) 100020 100826 1
CDS - ZP_01133305.1 PTD2_06669 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshN (pilus type IV) 100823 101947 1
CDS - ZP_01133306.1 PTD2_06674 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV) 101947 103665 1
CDS - ZP_01133307.1 PTD2_06679 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) 103658 104893 1
CDS - ZP_01133308.1 PTD2_06684 hypothetical protein 104894 105391 1
CDS - ZP_01133309.1 PTD2_06689 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshB (pilus type IV) 105547 106149 1
CDS - ZP_01133310.1 PTD2_06694 MSHA pilin protein MshA 106198 106731 1
CDS - ZP_01133311.1 PTD2_06699 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshC (pilus type IV) 106735 107214 1
CDS - ZP_01133312.1 PTD2_06704 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV) 107201 107821 1
CDS - ZP_01133313.1 PTD2_06709 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshO (pilus type IV) 107821 108654 1
CDS - ZP_01133314.1 PTD2_06714 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshP (pilus type IV) 108658 109146 1
CDS - ZP_01133315.1 PTD2_06719 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (pilus type IV) 109124 113311 1
CDS - ZP_01133316.1 PTD2_06724 hypothetical protein 113368 115428 1
CDS - ZP_01133317.1 PTD2_06729 Rod shape-determining protein 115588 116631 1
CDS - ZP_01133318.1 PTD2_06734 putative rod shape-determining protein 116631 117470 1
CDS - ZP_01133319.1 PTD2_06739 rod shape-determining protein 117463 117942 1