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Pseudoalteromonas tunicata D2, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA - - PTD2_r16264 16S ribosomal RNA 1 890 1
rRNA - - PTD2_r16266 23S ribosomal RNA 1160 4049 1
rRNA - - PTD2_r16262 5S ribosomal RNA 4177 4295 1
CDS - ZP_01134856.1 PTD2_14377 putative sensory box histidine kinase/response regulator 4707 7454 1
CDS - ZP_01134857.1 PTD2_14382 hypothetical protein 7458 7793 1
CDS - ZP_01134858.1 PTD2_14387 response regulator 7790 9001 1
CDS - ZP_01134859.1 PTD2_14392 putative D-amino acid dehydrogenase, small subunit 9141 10445 -1
CDS - ZP_01134860.1 PTD2_14397 dihydrodipicolinate synthetase family protein 10493 11401 1
CDS - ZP_01134861.1 PTD2_14402 Proline racemase 11483 12484 1
CDS - ZP_01134862.1 PTD2_14407 ketoglutarate semialdehyde dehydrogenase 12495 13973 1
CDS - ZP_01134863.1 PTD2_14412 transcriptional regulator, GntR family protein 14112 14768 1
CDS - ZP_01134864.1 PTD2_14417 hypothetical protein 14802 15197 -1
CDS - ZP_01134865.1 PTD2_14422 putative phage shock protein E 15361 15759 -1
CDS - ZP_01134866.1 PTD2_14427 hypothetical protein 15885 16478 -1
CDS - ZP_01134867.1 PTD2_14432 RNA polymerase sigma-70 factor 16468 17031 -1
CDS - ZP_01134868.1 PTD2_14437 TonB-like periplasmic protein 17302 17940 -1
CDS ribA ZP_01134869.1 PTD2_14442 GTP cyclohydrolase II protein 17645 17812 1
CDS - ZP_01134870.1 PTD2_14447 GTP cyclohydrolase II protein 18183 18332 1
CDS ribA ZP_01134871.1 PTD2_14452 GTP cyclohydrolase II protein 18401 18793 1
CDS - ZP_01134872.1 PTD2_14457 hypothetical protein 18902 19681 1
CDS - ZP_01134873.1 PTD2_14462 putative regulatory protein, inhibitor of RecA recombinase and coprotease activities 19681 20145 1
CDS - ZP_01134874.1 PTD2_14467 alanyl-tRNA synthetase 20156 22756 1
CDS - ZP_01134875.1 PTD2_14472 Aspartokinase 22763 23977 1
CDS - ZP_01134876.1 PTD2_14477 carbon storage regulator 24072 24260 1
CDS - ZP_01134877.1 PTD2_14482 hypothetical protein 24346 25206 -1
CDS - ZP_01134878.1 PTD2_14487 putative lipoprotein 25333 27138 1
CDS - ZP_01134879.1 PTD2_14492 putative efflux protein 27175 27729 -1
CDS - ZP_01134880.1 PTD2_14497 hypothetical protein 27728 27841 1
CDS - ZP_01134881.1 PTD2_14502 putative mechanosensitive ion channel 27949 28821 1
CDS - ZP_01134882.1 PTD2_14507 hypothetical protein 29066 29875 1
CDS - ZP_01134883.1 PTD2_14512 putative orphan protein; putative membrane protein 29923 30399 -1
CDS - ZP_01134884.1 PTD2_14517 hypothetical protein 30412 31200 -1
CDS - ZP_01134885.1 PTD2_14522 hypothetical protein 31188 31289 1
CDS - ZP_01134886.1 PTD2_14527 hypothetical protein 31286 31603 -1
CDS - ZP_01134887.1 PTD2_14532 hydrophobe/amphiphile efflux-1 family protein 31713 34715 -1
CDS - ZP_01134888.1 PTD2_14537 efflux transporter, MFP subunit, AcrA/E family protein 34828 36030 -1
CDS - ZP_01134889.1 PTD2_14542 enoyl-CoA hydratase 36251 37048 1
CDS - ZP_01134890.1 PTD2_14547 putative effector of murein hydrolase LrgA 37140 37481 1
CDS - ZP_01134891.1 PTD2_14552 hypothetical protein 37478 38182 1
CDS - ZP_01134892.1 PTD2_14557 hypothetical protein 38388 38597 -1
CDS - ZP_01134893.1 PTD2_14562 putative lipoprotein 38596 40308 1
CDS - ZP_01134894.1 PTD2_14567 ATP-dependent RNA helicase 40406 41632 -1
CDS - ZP_01134895.1 PTD2_14572 hypothetical protein 41726 42418 1
CDS - ZP_01134896.1 PTD2_14577 predicted calcium-binding protein 42516 48239 1
CDS - ZP_01134897.1 PTD2_14582 flavodoxin 48318 48839 -1
CDS - ZP_01134898.1 PTD2_14587 site-specific tyrosine recombinase XerD 48939 49844 1
CDS - ZP_01134899.1 PTD2_14592 disulfide bond isomerase, periplasmic; chaperone; activated by DsbD; homodimeric 49905 50630 1
CDS - ZP_01134900.1 PTD2_14597 Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific 50696 52438 1
CDS - ZP_01134901.1 PTD2_14602 peptide chain release factor 2 (RF-2) 52948 53730 1
CDS lysS ZP_01134902.1 PTD2_14607 lysyl-tRNA synthetase 53758 55293 1
CDS - ZP_01134903.1 PTD2_14612 hypothetical protein 55584 55856 1
tRNA - - PTD2_t16214 tRNA-Ser 56049 56138 1
tRNA - - PTD2_t16216 tRNA-Arg 56166 56239 1
tRNA - - PTD2_t16218 tRNA-Arg 56300 56373 1
tRNA - - PTD2_t16220 tRNA-Arg 56435 56508 1
tRNA - - PTD2_t16222 tRNA-Arg 56570 56643 1
CDS - ZP_01134904.1 PTD2_14617 hypothetical protein 56806 57657 1
CDS - ZP_01134905.1 PTD2_14622 hypothetical protein 57733 58206 1
CDS - ZP_01134906.1 PTD2_14627 LasA protease precursor 58263 59474 -1
CDS - ZP_01134907.1 PTD2_14632 putative oxaloacetate decarboxylase, gamma subunit 60138 60356 1
CDS - ZP_01134908.1 PTD2_14637 oxaloacetate decarboxylase 60369 62147 1
CDS - ZP_01134909.1 PTD2_14642 Oxaloacetate decarboxylase, beta subunit 62156 63286 1
CDS - ZP_01134910.1 PTD2_14647 hypothetical protein 63390 63566 1
CDS - ZP_01134911.1 PTD2_14652 hypothetical protein 63539 65698 -1
CDS - ZP_01134912.1 PTD2_14657 Periplasmic binding protein 65766 66599 -1
CDS - ZP_01134913.1 PTD2_14662 putative cobalamin biosynthesis protein 66583 67533 -1
CDS - ZP_01134914.1 PTD2_14667 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; MtnN 67534 68241 -1
CDS - ZP_01134915.1 PTD2_14672 hypothetical protein 68378 68971 -1
CDS - ZP_01134916.1 PTD2_14677 hypothetical protein 69110 70138 -1
CDS - ZP_01134917.1 PTD2_14682 Secreted protein 70383 72185 1
CDS - ZP_01134918.1 PTD2_14687 aerobic respiration control sensor protein arcB 72230 74542 1
CDS - ZP_01134919.1 PTD2_14692 aerobic respiration control protein arcA (Dye resistance protein) 74550 75266 -1
CDS - ZP_01134920.1 PTD2_14697 hypothetical protein 75373 75855 -1
CDS - ZP_01134921.1 PTD2_14702 Signal transduction histidine kinase (contains HAMP domain) 75890 77509 -1
CDS - ZP_01134922.1 PTD2_14707 putative ribosomal RNA small subunit methyltransferase C 77711 78742 -1
CDS - ZP_01134923.1 PTD2_14712 tRNA (m7G46) methyltransferase, SAM-dependent 78808 79533 -1
CDS - ZP_01134924.1 PTD2_14717 A/G-specific adenine glycosylase 79664 80734 1
CDS - ZP_01134925.1 PTD2_14722 hypothetical protein 80763 81029 1
CDS - ZP_01134926.1 PTD2_14727 putative sensory box histidine kinase/response regulator 81077 83785 -1
CDS - ZP_01134927.1 PTD2_14732 hypothetical protein 83873 84064 1
tRNA - - PTD2_t16224 tRNA-Thr 84266 84338 1
tRNA - - PTD2_t16226 tRNA-Phe 84392 84464 1
tRNA - - PTD2_t16228 tRNA-Thr 84505 84577 1
tRNA - - PTD2_t16230 tRNA-Phe 84589 84661 1
CDS - ZP_01134928.1 PTD2_14737 hypothetical protein 84923 85246 -1
CDS - ZP_01134929.1 PTD2_14742 hypothetical protein 85374 85682 -1
CDS - ZP_01134930.1 PTD2_14747 putative outer membrane transport protein 86024 87421 1
CDS - ZP_01134931.1 PTD2_14752 efflux transporter, RND family, MFP subunit 87426 88721 1
CDS - ZP_01134932.1 PTD2_14757 putative multidrug resistance protein (AcrB/AcrD/AcrF family) 88764 91892 1
CDS - ZP_01134933.1 PTD2_14762 hypothetical protein 92438 93004 1
CDS - ZP_01134934.1 PTD2_14767 proline aminopeptidase P II 93017 94318 1
CDS - ZP_01134935.1 PTD2_14772 2-octaprenyl-6-methoxyphenol hydroxylase 94320 95513 1
CDS - ZP_01134936.1 PTD2_14777 putative monooxygenase, FAD/NAD(P)-binding domain 95510 96700 1
CDS - ZP_01134937.1 PTD2_14782 hypothetical protein 96778 97026 -1
CDS - ZP_01134938.1 PTD2_14787 hypothetical protein 97038 97775 -1
CDS - ZP_01134939.1 PTD2_14792 putative transcriptional regulator 97833 98471 1
CDS - ZP_01134940.1 PTD2_14797 hypothetical protein 98623 99726 1
CDS - ZP_01134941.1 PTD2_14802 N-terminal winged-HTH domain fused to TolB-like domain 99701 101701 -1
CDS - ZP_01134942.1 PTD2_14807 putative bacterial regulatory protein LysR Family protein 101792 102637 -1
CDS - ZP_01134943.1 PTD2_14812 putative orphan protein; putative enzyme 102764 103366 1