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Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS repA NP_443803.1 NGR_a00010 replication protein RepA 101 1324 1
CDS repB NP_443802.1 NGR_a00020 replication protein RepB 1381 2361 1
CDS repC NP_443801.1 NGR_a00050 replication protein RepC 2516 3730 1
CDS - NP_443800.1 NGR_a00060 putative cold-shock DNA-binding domain-containing protein 6296 6505 1
CDS - NP_443799.1 NGR_a00070 DNA integration/recombination/inversion protein 6654 7571 -1
CDS - NP_443798.1 NGR_a00080 hypothetical 41.8 kDa protein 8103 9245 1
CDS - NP_443797.1 NGR_a00090 hypothetical 43.4 kDa protein 9271 10446 1
CDS - NP_443796.1 NGR_a00100 hypothetical 71.6 kDa protein 10904 12826 1
CDS - NP_443795.1 NGR_a00110 hypothetical 57.8 kDa protein 12823 14376 1
CDS - NP_443794.1 NGR_a00120 hypothetical 10.2 kDa integral membrane protein 14410 14706 1
CDS - NP_443793.1 NGR_a00130 conserved hypothetical 137.7 kDa protein 14763 18356 1
CDS - NP_443792.1 NGR_a00150 hypothetical 66.8 kDa protein 18466 20286 -1
CDS - NP_443791.1 NGR_a00160 hypothetical 47.6 kDa protein 20359 21654 -1
CDS - NP_444068.1 NGR_a00170 putative transposase number 2 of insertion sequence NGRIS-3a 21953 22744 -1
CDS - NP_443789.1 NGR_a00180 putative transposase number 1 of insertion sequence NGRIS-3a 22741 24291 -1
CDS - NP_443788.1 NGR_a00190 hypothetical 24.3 kDa protein 24639 25307 -1
CDS - NP_443787.1 NGR_a00200 putative periplasmic serine protease, DO/DeqQ family 25648 27540 -1
CDS - NP_443786.1 NGR_a00210 hypothetical 15.3 kDa precursor protein; potential periplasmic protein 27656 28072 -1
CDS - NP_443785.1 NGR_a00220 hypothetical 9.6 kDa integral membrane protein 28144 28419 -1
CDS - NP_443784.1 NGR_a00230 hypothetical 30.0 kDa precursor protein; potential periplasmic protein 30247 31062 -1
CDS - NP_443783.1 NGR_a00240 putative transposase number 2 for older and disrupted insertion sequence NGRIS-28c 31606 32979 -1
CDS - NP_443782.1 NGR_a00250 putative transposase number 1 of insertion sequence NGRIS-4a 33989 34258 1
CDS - NP_443781.1 NGR_a00260 putative transposase number 2 of insertion sequence NGRIS-4a 34449 34898 1
CDS - NP_443780.1 NGR_a00270 putative transposase number 3 of insertion sequence NGRIS-4a 34918 35184 1
CDS - NP_444021.1 NGR_a00280 putative transposase number 4 of insertion sequence NGRIS-4a 35174 37258 1
CDS - NP_443778.1 NGR_a00290 hypothetical protein 38266 38811 -1
CDS - NP_443777.1 NGR_a00300 hypothetical 12.1 kDa protein 38811 39134 -1
CDS - NP_443776.1 NGR_a00310 putative transposase of IS66 family of undefined transposable element 39350 39916 1
CDS - NP_443775.1 NGR_a00320 transcriptional regulator, Roc/MucR family 40340 40771 -1
CDS - NP_443774.1 NGR_a00330 hypothetical 21.8 kDa protein 41289 41867 -1
CDS - NP_443773.1 NGR_a00340 SyrB-like protein 41998 42444 -1
CDS - NP_443772.1 NGR_a00350 uncharacterized transcription regulator (Cro/CI family) 42590 43021 -1
CDS nodD1 NP_443771.1 NGR_a00360 LysR-type transcription regulator of nodulation genes; nodulation protein NodD1 43584 44552 -1
CDS - NP_443770.1 NGR_a00370 hypothetical 5.5 kDa protein 44655 44807 -1
CDS noeJ NP_443769.1 NGR_a00380 mannose-1-phosphate guanylyltransferase; nodulation protein NoeJ 45284 46822 -1
CDS noeK NP_443768.1 NGR_a00390 phosphomanomutase; nodulation protein NoeK 46885 48309 1
CDS nodZ NP_443767.1 NGR_a00400 chitin oligosaccharide fucosyltransferase; nodulation protein NodZ 48538 49506 1
CDS noeL NP_443766.1 NGR_a00410 GDP-mannose 4,6, dehydratase; nodulation protein NoeL 49751 50806 1
CDS nolK NP_443765.1 NGR_a00420 nucleotide sugar epimerase/dehydrogenase; nodulation protein NolK 50815 51759 1
CDS - NP_443764.1 NGR_a00430 putative phytoene synthase-like protein 53442 54320 1
CDS hpnD NP_443763.1 NGR_a00440 squalene synthase; HpnD 54317 55156 1
CDS - NP_443762.1 NGR_a00450 putative flavoprotein oxidoreductase 55156 56409 1
CDS shc NP_443761.1 NGR_a00460 probable squalene-hopene cyclase 56458 58401 1
CDS syrM2 NP_444176.1 NGR_a00470 LysR-type transcription regulator SyrM2; involved in flavonoid dependent regulation 59402 60421 -1
CDS - NP_444175.1 NGR_a00480 hypothetical 5.5 kDa protein 62803 62952 -1
CDS nopT NP_444174.1 NGR_a00490 nodulation outer protein NopT; probable type III effector 63187 63972 -1
CDS - NP_444173.1 NGR_a00500 putative transposase of degenerate insertion sequence NGRIS-25c 65976 67046 -1
CDS - NP_444171.1 NGR_a00520 conserved hypothetical 20.1 kDa TPR repeat-containing protein; possibly linked to type III secretion 69079 69627 -1
CDS rhcV NP_444170.1 NGR_a00530 innermembrane protein RhcV; component of type III secretion apparatus 69644 71737 -1
CDS - NP_444169.1 NGR_a00540 conserved hypothetical 31.2 kDa membrane protein; possibly linked to type III secretion 71927 72817 -1
CDS nopA YP_003097667.1 NGR_a00550 nodulation outer protein NopA; precursor of type III secretion pilus subunit 72924 73139 -1
CDS nopC YP_003097668.1 NGR_a00560 nodulation outer protein NopC; linked to type III secretion pilus 73210 73506 -1
CDS nopP NP_444168.1 NGR_a00570 nodulation outer protein NopP; probable type III effector 74205 75020 -1
CDS rhcU NP_444167.1 NGR_a00580 innermembrane protein RhcU; component of type III secretion apparatus 75818 76855 -1
CDS rhcT NP_444166.1 NGR_a00590 innermembrane protein RhcT; component of type III secretion apparatus 76852 77670 -1
CDS rhcS NP_444165.1 NGR_a00600 innermembrane protein RhcS; component of type III secretion apparatus 77679 77954 -1
CDS rhcR NP_444164.1 NGR_a00610 type III secretion system protein 77954 78622 -1
CDS rhcQ NP_444163.1 NGR_a00620 component RhcQ of type III secretion apparatus 78615 79691 -1
CDS - NP_444162.1 NGR_a00630 conserved hypothetical 20.4 kDa protein; possibly linked to type III secretion 79716 80252 -1
CDS rhcN NP_444161.1 NGR_a00640 ATPase RhcN for type III secretion 80228 81583 -1
CDS rhcL NP_444160.1 NGR_a00650 nodulation protein RhcL; putative regulator of RhcN activity in type III secretion 81580 82206 -1
CDS nolU NP_444159.1 NGR_a00660 nodulation protein NolU; possibly linked to type III secretion 82208 82846 -1
CDS rhcJ NP_444158.1 NGR_a00670 outermembrane protein RhcJ; component of type III secretion apparatus 82843 83712 -1
CDS nopB NP_444157.1 NGR_a00680 nodulation outer protein NopB; precursor of type III secretion pilus subunit 83722 84216 -1
CDS rhcC1 NP_444156.1 NGR_a00690 outermembrane protein RhcC1; component of type III secretion apparatus 84372 85076 1
CDS nopX NP_444155.1 NGR_a00700 nodulation outer protein NopX; probable subunit of type III translocon 85357 87147 1
CDS - NP_444154.1 NGR_a00710 conserved hypothetical 17.1 kDa protein; second copy encoded by pNGR234b 87297 87761 1
CDS - NP_444153.1 NGR_a00720 conserved uncharacterized 49.9 kDa enzyme; second copy encoded by pNGR234b 87761 89134 1
CDS - NP_444152.1 NGR_a00730 conserved putative cysteine synthase; second copy encoded by pNGR234b 89135 90145 1
CDS - NP_444151.1 NGR_a00740 conserved putative oxidoreductase; second copy encoded by pNGR234b 90142 91281 1
CDS - NP_444150.1 NGR_a00750 conserved putative siderophore biosynthesis protein; second copy encoded by pNGR234b 91281 93167 1
CDS - NP_444149.1 NGR_a00760 conserved uncharacterized MFS-type transporter; second copy encoded by pNGR234b 93164 94378 1
CDS nopL NP_444148.1 NGR_a00770 nodulation outer protein NopL; probable type III effector 94637 95653 1
CDS - NP_444147.1 NGR_a00780 conserved putative lipoprotein of 20.5 kDa 96093 96659 -1
CDS rhcC2 NP_444146.1 NGR_a00790 outermembrane protein RhcC2; component of type III secretion apparatus 96669 97940 -1
CDS ttsI NP_444145.1 NGR_a00800 transcription regulator of late flavonoid-inducible functions TtsI 98120 98800 -1
CDS nodD2 NP_444144.1 NGR_a00810 LysR-type transcription regulator of nodulation genes; nodulation protein NodD2 100504 101442 1
CDS - NP_444143.1 NGR_a00820 conserved hypothetical 55.5 kDa protein 101570 103087 -1
CDS - NP_444142.1 NGR_a00830 putative exopolysaccharide repressor protein 103514 103816 -1
CDS - NP_444141.1 NGR_a00840 hypothetical 6.5 kDa protein 103948 104124 -1
CDS - NP_444140.1 NGR_a00850 conserved hypothetical 7.6 kDa protein 104121 104324 -1
CDS - NP_444139.1 NGR_a00860 conserved hypothetical 18.0 kDa protein 104347 104835 -1
CDS nifK2 NP_444114.1 NGR_a00870 nitrogenase molybdenum-iron protein beta chain NifK2 105088 106629 -1
CDS nifD2 NP_444137.1 NGR_a00880 nitrogenase molybdenum-iron protein alpha chain NifD2 106725 108239 -1
CDS nifH NP_444136.1 NGR_a00890 nitrogenase reductase 108336 109226 -1
CDS - NP_444135.1 NGR_a00900 hypothetical 14.9 kDa protein 110150 110557 -1
CDS - NP_444134.1 NGR_a00910 hypothetical 11.0 kDa protein 110943 111263 1
CDS - NP_444133.1 NGR_a00920 conserved periplasmic solute-binding protein of ABC-transporter 111961 113952 1
CDS nifS NP_444132.1 NGR_a00930 nitrogen fixation protein NifS; nitrogenase cofactor synthesis 114799 115962 1
CDS nifW NP_444131.1 NGR_a00940 nitrogenase stabilizing/protective protein 116126 116578 1
CDS - NP_444130.1 NGR_a00950 hypothetical 13.3 kDa protein 117217 117594 1
CDS - NP_444129.1 NGR_a00960 conserved hypothetical 59.0 kDa protein 117628 119169 1
CDS - NP_444128.1 NGR_a00970 conserved hypothetical 15.6 kDa protein 119317 119754 -1
CDS - NP_444127.1 NGR_a00980 hypothetical 19.4 kDa protein 120662 121207 -1
CDS - NP_444126.1 NGR_a00990 conserved monooxygenase oxidoreductas of 37.7 kDa protein; involved in flavonoid-dependent IAA synthesis 121245 122273 -1
CDS - NP_444125.1 NGR_a01000 conserved histidinol-phosphate aminotransferase-like protein; involved in flavonoid-dependent IAA synthesis 122680 123786 -1
CDS - NP_444124.1 NGR_a01010 conserved hypothetical 39.0 kDa membrane protein; uncharacterized transporter 124206 125339 -1
CDS - NP_444123.1 NGR_a01020 transcriptional regulator (Cro/CI family) 126076 126507 -1
CDS - NP_444122.1 NGR_a01030 conserved probable Zn-dependent protease, M16 family 127018 128361 -1
CDS - NP_444121.1 NGR_a01040 conserved probable Zn-dependent protease, M16 family 128358 129896 -1