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Ruminococcus sp. 18P13 draft genome. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - CBL16294.1 RUM_00110 hypothetical protein 199 465 -1
tRNA - - RUM_T_24650 - 2041 2116 -1
CDS - CBL16295.1 RUM_00130 hypothetical protein 2279 3298 -1
CDS - CBL16296.1 RUM_00140 Dockerin type I repeat./Ricin-type beta-trefoil lectin domain. 4122 7064 1
CDS - CBL16297.1 RUM_00150 diguanylate cyclase (GGDEF) domain 7152 9383 -1
CDS - CBL16298.1 RUM_00170 hypothetical protein 11318 12019 -1
CDS - CBL16299.1 RUM_00180 VTC domain. 12012 12761 -1
CDS - CBL16300.1 RUM_00190 hypothetical protein 13236 16316 1
CDS - CBL16301.1 RUM_00200 hypothetical protein 16462 17562 -1
CDS - CBL16302.1 RUM_00210 glutamate-5-semialdehyde dehydrogenase 17596 18843 -1
CDS - CBL16303.1 RUM_00230 Lactate dehydrogenase and related dehydrogenases 19694 20647 -1
CDS - CBL16304.1 RUM_00250 hypothetical protein 21171 21569 1
CDS - CBL16305.1 RUM_00270 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 23872 25854 -1
CDS - CBL16306.1 RUM_00280 Clostripain family. 26109 28283 1
CDS - CBL16307.1 RUM_00290 hypothetical protein 28583 28855 1
CDS - CBL16308.1 RUM_00300 Cysteine protease 29433 33524 1
CDS - CBL16309.1 RUM_00310 serine hydroxymethyltransferase 33715 34968 1
CDS - CBL16310.1 RUM_00320 Recombination protein MgsA 35043 36305 1
CDS - CBL16311.1 RUM_00330 Ribosomal protein S1 36289 37224 -1
CDS - CBL16312.1 RUM_00340 hypothetical protein 37296 37658 -1
CDS - CBL16313.1 RUM_00350 hypothetical protein 37657 37758 1
CDS - CBL16314.1 RUM_00360 Uncharacterized protein conserved in bacteria 37857 38057 1
CDS - CBL16315.1 RUM_00370 bacterial peptide chain release factor 1 (bRF-1) 38097 39182 1
CDS - CBL16316.1 RUM_00380 translation factor SUA5 39203 40228 1
CDS - CBL16317.1 RUM_00400 Aspartyl aminopeptidase 40947 42374 1
CDS - CBL16318.1 RUM_00410 Sporulation factor SpoIIGA. 42506 43357 1
CDS - CBL16319.1 RUM_00420 RNA polymerase, sigma 29 subunit, SigE 43396 44094 1
CDS - CBL16320.1 RUM_00430 pantothenate kinase, type III 44181 44960 1
CDS - CBL16321.1 RUM_00440 Predicted membrane protein 45006 45623 1
CDS - CBL16322.1 RUM_00450 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 46016 46825 1
CDS - CBL16323.1 RUM_00460 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 46853 47662 1
CDS - CBL16324.1 RUM_00470 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 47676 48479 1
CDS - CBL16325.1 RUM_00480 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 48525 49649 1
CDS - CBL16326.1 RUM_00490 dihydropyrimidinase 49776 51128 1
CDS - CBL16327.1 RUM_00500 dihydroorotate oxidase B, catalytic subunit 51166 52626 1
CDS - CBL16328.1 RUM_00510 Purine catabolism regulatory protein-like family. 52650 53810 1
CDS - CBL16329.1 RUM_00520 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 53828 55162 1
CDS - CBL16330.1 RUM_00530 hypothetical protein 55175 55567 1
CDS - CBL16331.1 RUM_00540 amidase, hydantoinase/carbamoylase family 55628 56890 1
CDS - CBL16332.1 RUM_00550 Alcohol dehydrogenase, class IV 56904 58061 1
CDS - CBL16333.1 RUM_00560 hypothetical protein 58083 58433 -1
CDS - CBL16334.1 RUM_00570 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family 58504 59586 -1
CDS - CBL16335.1 RUM_00580 DNA primase, catalytic core 59598 61343 -1
CDS - CBL16336.1 RUM_00590 deoxyguanosinetriphosphate triphosphohydrolase, putative 61348 62343 -1
CDS - CBL16337.1 RUM_00600 Uncharacterized conserved protein 62429 63061 -1
CDS - CBL16338.1 RUM_00610 LSU ribosomal protein L31P 63113 63316 -1
CDS - CBL16339.1 RUM_00620 Phosphomannomutase 63451 65172 -1
rRNA 16S - RUM_R_24670 16S ribosomal RNA 65921 67414 1
tRNA - - RUM_T_24220 - 67526 67601 1
tRNA - - RUM_T_24230 - 67612 67688 1
rRNA 23S - RUM_R_24660 23S ribosomal RNA 67895 70725 1
CDS - CBL16340.1 RUM_00630 hydroxylamine reductase 71154 72824 -1
CDS - CBL16341.1 RUM_00640 hypothetical protein 72997 75312 -1
CDS - CBL16342.1 RUM_00650 conserved protein of unknown function cotranscribed with Bmr (bmrU) 75317 76228 -1
tRNA - - RUM_T_24240 - 76451 76526 1
CDS - CBL16343.1 RUM_00670 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 80894 81688 -1
CDS - CBL16344.1 RUM_00680 Phosphopantetheine attachment site. 81685 81933 -1
CDS - CBL16345.1 RUM_00690 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 81930 82679 -1
CDS - CBL16346.1 RUM_00700 Phosphopantetheine attachment site. 82676 82924 -1
CDS - CBL16347.1 RUM_00710 Beta-ketoacyl synthase, N-terminal domain./Beta-ketoacyl synthase, C-terminal domain. 82940 84643 -1
CDS - CBL16348.1 RUM_00720 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 84654 85397 -1
CDS - CBL16349.1 RUM_00730 Predicted thioesterase involved in non-ribosomal peptide biosynthesis 85390 86148 -1
CDS - CBL16350.1 RUM_00740 Peptide arylation enzymes 86141 87973 -1
CDS - CBL16351.1 RUM_00760 ABC-type antimicrobial peptide transport system, ATPase component 89049 89750 1
CDS - CBL16352.1 RUM_00770 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 89747 91963 1
CDS - CBL16353.1 RUM_00780 Phosphopantetheinyl transferase 91956 92708 1
CDS - CBL16354.1 RUM_00790 crotonyl-CoA reductase 92671 93936 1
CDS - CBL16355.1 RUM_00800 3-oxoacyl-(acyl-carrier-protein) synthase 93933 95138 1
CDS - CBL16356.1 RUM_00810 Long-chain acyl-CoA synthetases (AMP-forming) 95135 96712 1
CDS - CBL16357.1 RUM_00830 hypothetical protein 96959 97174 1
CDS - CBL16358.1 RUM_00840 Acyl transferase domain. 97164 98360 1
CDS - CBL16359.1 RUM_00850 Condensation domain. 98365 99672 1
CDS - CBL16360.1 RUM_00880 Phosphotransferase enzyme family. 102074 102823 -1
CDS - CBL16361.1 RUM_00890 acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE 102839 105439 -1
CDS - CBL16362.1 RUM_00900 hypothetical protein 105805 106371 1
CDS - CBL16363.1 RUM_00910 hypothetical protein 106861 107133 1
CDS - CBL16364.1 RUM_00920 hypothetical protein 107250 107471 1
CDS - CBL16365.1 RUM_00930 hypothetical protein 107455 107709 1
CDS - CBL16366.1 RUM_00940 Mn-containing catalase 107709 108284 1
CDS - CBL16367.1 RUM_00950 Membrane protein involved in the export of O-antigen and teichoic acid 108312 109760 -1
CDS - CBL16368.1 RUM_00960 Fucose 4-O-acetylase and related acetyltransferases 109760 110833 -1
CDS - CBL16369.1 RUM_00970 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 110836 112038 -1
CDS - CBL16370.1 RUM_00980 hypothetical protein 112043 113233 -1
CDS - CBL16371.1 RUM_01000 Uncharacterized conserved protein 114225 115211 -1
CDS - CBL16372.1 RUM_01020 4-diphosphocytidyl-2-methyl-D-erithritol synthase 116262 116975 -1
CDS - CBL16373.1 RUM_01030 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 116993 118138 -1
CDS - CBL16374.1 RUM_01040 Bacterial transferase hexapeptide (three repeats). 118161 118850 -1
CDS - CBL16375.1 RUM_01050 Glycosyltransferase 118878 120056 -1
CDS - CBL16376.1 RUM_01060 dTDP-4-dehydrorhamnose 3,5-epimerase 120077 120685 -1
CDS - CBL16377.1 RUM_01070 dTDP-4-dehydrorhamnose reductase 120685 121545 -1
CDS - CBL16378.1 RUM_01080 cytidyltransferase-related domain 121542 121988 -1
CDS - CBL16379.1 RUM_01090 dTDP-glucose 4,6-dehydratase 122000 123034 -1
CDS - CBL16380.1 RUM_01100 Glucose-1-phosphate thymidylyltransferase 123050 123946 -1
CDS - CBL16381.1 RUM_01120 Site-specific recombinases, DNA invertase Pin homologs 124447 125910 1
CDS - CBL16382.1 RUM_01140 folylpolyglutamate synthase/dihydrofolate synthase 126135 127409 1
CDS - CBL16383.1 RUM_01150 GTP cyclohydrolase I 127421 127972 1
CDS - CBL16384.1 RUM_01160 uncharacterized domain HDIG 127969 128445 1
CDS - CBL16385.1 RUM_01170 Dihydropteroate synthase 128454 129275 1
CDS - CBL16386.1 RUM_01180 dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 129268 130086 1
CDS - CBL16387.1 RUM_01190 Dihydrofolate reductase 130083 130577 1