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Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
tRNA - - SeJ_A0001 tRNA-Glu 659 736 1
rRNA rrl - SeJ_A0002 23S ribosomal RNA 929 3834 1
rRNA rrf - SeJ_A0004 5S ribosomal RNA 3929 4044 1
CDS - ZP_03218387.1 SeJ_A0005 hypothetical protein 4090 4221 -1
CDS - ZP_03218293.1 SeJ_A0006 acetyltransferase, gnat family 4377 4814 -1
CDS metA ZP_03217890.1 SeJ_A0007 homoserine O-succinyltransferase 4971 5900 1
CDS aceB ZP_03218194.1 SeJ_A0008 malate synthase A 6166 7770 1
CDS aceA ZP_03218517.1 SeJ_A0009 isocitrate lyase 7802 9106 1
CDS aceK ZP_03218309.1 SeJ_A0011 isocitrate dehydrogenase kinase/phosphatase 9208 10959 1
CDS - ZP_03218385.1 SeJ_A0012 putative cytoplasmic protein 10923 11357 -1
CDS - ZP_03218371.1 SeJ_A0013 acetate operon repressor 11341 12165 -1
CDS metH ZP_03218261.1 SeJ_A0014 methionine synthase 12470 16153 1
CDS - ZP_03218174.1 SeJ_A0015 sodium-dependent inorganic phosphate 16420 18051 1
CDS - ZP_03218063.1 SeJ_A0016 peptidase E 18126 18815 -1
CDS - ZP_03217879.1 SeJ_A0017 nucleoprotein/polynucleotide-associated enzyme 19023 19562 1
CDS - ZP_03218496.1 SeJ_A0018 ribosomal large subunit pseudouridine synthase F 19609 20478 1
CDS - ZP_03218139.1 SeJ_A0019 conserved hypothetical protein 20475 20747 -1
CDS - ZP_03217972.1 SeJ_A0020 DeoR family regulatory protein 20958 21716 -1
CDS - ZP_03218276.1 SeJ_A0021 putative conserved hypothetical protein 21703 22566 -1
CDS - ZP_03218374.1 SeJ_A0022 conserved hypothetical protein 22583 23422 -1
CDS - ZP_03218223.1 SeJ_A0023 putative membrane protein 23446 25035 -1
CDS - ZP_03218359.1 SeJ_A0024 hypothetical protein 25285 25431 1
CDS lysC ZP_03218126.1 SeJ_A0025 aspartokinase III, lysine-sensitive 25413 26762 -1
CDS pgi ZP_03218324.1 SeJ_A0026 glucose-6-phosphate isomerase 27150 28799 1
CDS - ZP_03218592.1 SeJ_A0027 conserved hypothetical protein 29240 29485 1
CDS - ZP_03217973.1 SeJ_A0028 conserved hypothetical protein 29549 30187 1
CDS - ZP_03217856.1 SeJ_A0029 conserved hypothetical protein 30184 30918 1
CDS - ZP_03218238.1 SeJ_A0030 putative lipoprotein 30918 33014 1
CDS - ZP_03218116.1 SeJ_A0031 protein PsiE 33157 33567 1
CDS malG ZP_03218546.1 SeJ_A0034 maltose/maltodextrin ABC transporter, permease protein MalG 35410 36300 -1
CDS malF ZP_03218429.1 SeJ_A0035 maltose/maltodextrin ABC transporter, permease protein MalF 36315 37859 -1
CDS malE ZP_03218153.1 SeJ_A0036 maltose/maltodextrin-binding periplasmic protein MalE 37991 39181 -1
CDS malK ZP_03217859.1 SeJ_A0037 maltose/maltodextrin ABC transporter, ATP-binding protein MalK 39543 40652 1
CDS - ZP_03218018.1 SeJ_A0038 maltoporin 40741 42099 1
CDS malM ZP_03218508.1 SeJ_A0039 maltose operon protein MalM 42263 43180 1
CDS - ZP_03218586.1 SeJ_A0040 chorismate--pyruvate lyase 43361 43858 1
CDS ubiA ZP_03218344.1 SeJ_A0041 4-hydroxybenzoate polyprenyl transferase 43872 44744 1
CDS - ZP_03218079.1 SeJ_A0042 acyltransferase domain protein 44843 47263 -1
CDS dgkA ZP_03218445.1 SeJ_A0043 diacylglycerol kinase 47434 47802 1
CDS lexA ZP_03218348.1 SeJ_A0044 LexA repressor 47911 48519 1
CDS - ZP_03218247.1 SeJ_A0045 DNA-damage-inducible protein F 48698 50023 1
CDS - ZP_03218039.1 SeJ_A0046 putative cytoplasmic protein 50005 50133 1
CDS - ZP_03218354.1 SeJ_A0047 conserved domain protein 50155 50364 1
CDS - ZP_03218032.1 SeJ_A0048 zinc uptake regulation protein 50464 50979 -1
CDS - ZP_03218163.1 SeJ_A0049 conjugative transfer protein 51226 52536 1
CDS - ZP_03218548.1 SeJ_A0050 tRNA-dihydrouridine synthase A 52624 53622 1
CDS - ZP_03218361.1 SeJ_A0052 oxidoreductase, zinc-binding dehydrogenase family 54207 55190 -1
CDS dnaB ZP_03218198.1 SeJ_A0053 replicative DNA helicase 55255 56670 1
CDS alr ZP_03218246.1 SeJ_A0054 alanine racemase 56702 57781 1
CDS - ZP_03218342.1 SeJ_A0055 aromatic-amino-acid aminotransferase 57967 59160 1
CDS aphA ZP_03218442.1 SeJ_A0056 had superfamily (subfamily iiib) phosphatase 59347 60060 1
CDS - ZP_03218541.1 SeJ_A0057 conserved hypothetical protein 60189 60605 1
CDS - ZP_03218229.1 SeJ_A0058 protein YjbR 60608 60964 1
CDS - ZP_03217937.1 SeJ_A0059 conserved hypothetical protein 60965 61303 -1
CDS - ZP_03218395.1 SeJ_A0060 conserved hypothetical protein 61290 61733 -1
CDS uvrA ZP_03218127.1 SeJ_A0061 excinuclease ABC, A subunit 61877 64702 -1
CDS ssb ZP_03218466.1 SeJ_A0062 single-stranded DNA-binding protein 64950 65480 1
CDS - ZP_03218368.1 SeJ_A0063 hypothetical protein 65871 66011 1
CDS - ZP_03218608.1 SeJ_A0064 hypothetical protein 66520 67152 1
CDS - ZP_03218516.1 SeJ_A0065 putative integral membrane protein 67149 68537 1
CDS - ZP_03218080.1 SeJ_A0066 putative ABC exporter outer membrane component 68920 69846 1
CDS - ZP_03217870.1 SeJ_A0067 conserved hypothetical protein 69843 71120 1
CDS - ZP_03217941.1 SeJ_A0068 putative Ig domain protein 71137 87822 1
CDS - ZP_03218005.1 SeJ_A0069 putative type-1 secretion protein 87862 89928 1
CDS - ZP_03218269.1 SeJ_A0071 cyclic diguanylate phosphodiesterase (EAL) domain protein 91049 92650 1
CDS - ZP_03218523.1 SeJ_A0072 transposon tn10 tetd protein 92638 92961 -1
CDS soxR ZP_03218351.1 SeJ_A0073 redox-sensitive transcriptional activator SoxR 93048 93506 1
CDS - ZP_03218596.1 SeJ_A0074 glutathione S-transferase, N- domain 93799 94467 1
CDS - ZP_03218077.1 SeJ_A0075 hypothetical protein 94448 94582 -1
CDS - ZP_03218272.1 SeJ_A0076 inorganic anion transporter, sulfate permease (SulP) family 94815 96164 1
CDS - ZP_03218552.1 SeJ_A0079 LysR family regulatory protein 98055 98942 -1
CDS - ZP_03218469.1 SeJ_A0078 LrgA family protein 98941 99456 1
CDS - ZP_03217955.1 SeJ_A0080 LrgB family protein 99449 100138 1
CDS actP ZP_03218208.1 SeJ_A0081 cation/acetate symporter ActP 100177 101826 -1
CDS - ZP_03217944.1 SeJ_A0082 putative membrane protein 101823 102137 -1
CDS acsA ZP_03218095.1 SeJ_A0083 acetate--CoA ligase 102377 104335 -1
CDS nrfA ZP_03218204.1 SeJ_A0084 formate-dependent cytochrome c nitrite reductase, c552 subunit 104767 106203 1
CDS nrfB ZP_03217910.1 SeJ_A0085 cytochrome c nitrite reductase, pentaheme subunit 106315 106881 1
CDS nrfC ZP_03218015.1 SeJ_A0086 cytochrome c nitrite reductase, Fe-S protein 106878 107549 1
CDS nrfD ZP_03217998.1 SeJ_A0087 cytochrome c nitrite reductase, NrfD subunit 107546 108502 1
CDS ccmF ZP_03217942.1 SeJ_A0088 cytochrome c-type biogenesis protein CcmF 108495 110231 1
CDS - ZP_03218228.1 SeJ_A0089 cytochrome c-type biogenesis protein 110224 110733 1
CDS - ZP_03218375.1 SeJ_A0090 formate-dependent nitrite reductase complex subunit NrfG 110730 111350 1
CDS - ZP_03218542.1 SeJ_A0091 conserved hypothetical protein 111490 111618 -1
CDS - ZP_03218507.1 SeJ_A0092 proton glutamate symport protein 111695 113005 1
CDS - ZP_03218333.1 SeJ_A0093 tetratricopeptide repeat protein 113163 113852 -1
CDS - ZP_03218190.1 SeJ_A0096 membrane-bound beta-hydroxylase 116548 117456 -1
CDS - ZP_03218040.1 SeJ_A0097 protein PhnO 117714 118148 -1
CDS - ZP_03218179.1 SeJ_A0098 protein PhnB 118300 118743 -1
CDS phnA ZP_03218594.1 SeJ_A0099 alkylphosphonate utilization operon protein PhnA 118863 119198 -1
CDS - ZP_03218535.1 SeJ_A0100 proline/betaine transporter 119666 121168 1
CDS - ZP_03218240.1 SeJ_A0101 sensor protein BasS/pmrB 121335 122414 -1
CDS basR ZP_03218052.1 SeJ_A0102 DNA-binding response regulator BasR 122415 123083 -1
CDS - ZP_03218499.1 SeJ_A0103 membrane protein YjdB 123080 124723 -1
CDS - ZP_03218218.1 SeJ_A0104 arginine/agmatine antiporter 124857 126194 -1
CDS - ZP_03218290.1 SeJ_A0105 porin thermoregulatory protein EnvY 126334 127065 -1
CDS adiA ZP_03218571.1 SeJ_A0106 biodegradative arginine decarboxylase 127393 129663 -1
CDS - ZP_03217918.1 SeJ_A0107 melibiose operon regulatory protein 129893 130783 -1
CDS - ZP_03218420.1 SeJ_A0108 alpha-galactosidase 131094 132449 1
CDS - ZP_03218538.1 SeJ_A0109 melibiose carrier protein 132533 133963 1