xBASE Logo
About | Contact | Home

Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
rRNA rrs - SeJ_A3878 16S ribosomal RNA 3 1536 1
tRNA - - SeJ_A3877 tRNA-Glu 1622 1699 1
rRNA rrl - SeJ_A3876 23S ribosomal RNA 1892 4797 1
rRNA rrf - SeJ_A3874 5S ribosomal RNA 4990 5105 1
tRNA - - SeJ_A3873 tRNA-Thr 5119 5196 1
rRNA rrf - SeJ_A3872 5S ribosomal RNA 5235 5350 1
CDS - ZP_03222007.1 SeJ_A3871 putative inner membrane protein 5600 5725 1
CDS - ZP_03222016.1 SeJ_A3870 putative lipoprotein 6179 6361 -1
CDS - ZP_03222012.1 SeJ_A3869 conserved hypothetical protein 6376 6540 1
CDS - ZP_03222019.1 SeJ_A3868 RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 6638 9751 -1
CDS - ZP_03221991.1 SeJ_A3867 acriflavine resistance protein E 9763 10920 -1
CDS - ZP_03221927.1 SeJ_A3866 conserved hypothetical protein 11102 11260 -1
CDS - ZP_03221942.1 SeJ_A3865 transcriptional repressor 11333 11995 1
CDS - ZP_03221928.1 SeJ_A3864 bacterial signalling protein N repeat 11998 14097 -1
CDS - ZP_03222004.1 SeJ_A3863 putative periplasmic protein 14247 14411 -1
CDS - ZP_03221956.1 SeJ_A3862 DNA methylase 14494 15378 -1
CDS fis ZP_03221944.1 SeJ_A3861 DNA-binding protein Fis 15464 15760 -1
CDS dusB ZP_03222017.1 SeJ_A3860 tRNA-dihydrouridine synthase B 15786 16751 -1
CDS prmA ZP_03221970.1 SeJ_A3859 ribosomal protein L11 methyltransferase 17412 18293 -1
CDS panF ZP_03221935.1 SeJ_A3858 sodium/pantothenate symporter 18305 19756 -1
CDS - ZP_03221978.1 SeJ_A3857 putative membrane protein 19746 19988 -1
CDS accC ZP_03222001.1 SeJ_A3856 acetyl-CoA carboxylase, biotin carboxylase 20097 21446 -1
CDS accB ZP_03221943.1 SeJ_A3855 acetyl-CoA carboxylase, biotin carboxyl carrier protein 21457 21927 -1
CDS - ZP_03221996.1 SeJ_A3854 membrane protein YedZ 22320 22919 -1
CDS - ZP_03222010.1 SeJ_A3853 protein YedY 22920 23924 -1
CDS - ZP_03221933.1 SeJ_A3852 protein YhdH 24037 25011 -1
CDS mreB ZP_03221988.1 SeJ_A3850 rod shape-determining protein MreB 27464 28507 1
CDS mreC ZP_03222009.1 SeJ_A3849 rod shape-determining protein MreC 28572 29624 1
CDS mreD ZP_03221981.1 SeJ_A3848 rod shape-determining protein MreD 29624 30115 1
CDS maf ZP_03221967.1 SeJ_A3847 septum formation protein Maf 30124 30717 1
CDS cafA ZP_03221971.1 SeJ_A3846 ribonuclease G 30707 32176 1
CDS - ZP_03221950.1 SeJ_A3845 conserved hypothetical protein 32283 36083 1
CDS tldD ZP_03221989.1 SeJ_A3844 protein TldD 36228 37673 1
CDS aaeR ZP_03221937.1 SeJ_A3843 transcriptional activator AaeR 37795 38724 -1
CDS aaeX ZP_03221961.1 SeJ_A3842 protein AaeX 38906 39109 1
CDS aaeA ZP_03222005.1 SeJ_A3841 p-hydroxybenzoic acid efflux pump subunit aaeA 39117 40049 1
CDS aaeB ZP_03221947.1 SeJ_A3840 p-hydroxybenzoic acid efflux pump subunit aaeB 40055 42022 1
CDS - ZP_03221926.1 SeJ_A3839 barstar 42194 42466 1
CDS - ZP_03221955.1 SeJ_A3838 conserved hypothetical protein 42526 42792 -1
CDS - ZP_03221990.1 SeJ_A3837 protein YhcN 42896 43159 -1
CDS argR ZP_03221980.1 SeJ_A3836 arginine repressor 43524 43994 -1
CDS mdh ZP_03221995.1 SeJ_A3835 malate dehydrogenase, NAD-dependent 44409 45347 1
CDS - ZP_03221936.1 SeJ_A3834 putative GntR-family transcriptional regulator 45467 46096 1
CDS - ZP_03221946.1 SeJ_A3833 transcriptional regulator 46083 46748 1
CDS - ZP_03222000.1 SeJ_A3832 anion transporter 46959 48227 1
CDS - ZP_03221974.1 SeJ_A3831 L(+)-tartrate dehydratase subunit alpha 48260 49159 1
CDS - ZP_03221957.1 SeJ_A3830 L(+)-tartrate dehydratase subunit beta 49159 49776 1
CDS - ZP_03221962.1 SeJ_A3829 oxaloacetate decarboxylase gamma chain 2 49933 50181 1
CDS oadA ZP_03221931.1 SeJ_A3828 oxaloacetate decarboxylase alpha subunit 50198 51973 1
CDS - ZP_03221940.1 SeJ_A3827 oxaloacetate decarboxylase beta chain 51989 53287 1
CDS - ZP_03221949.1 SeJ_A3826 putative inner membrane protein 53376 54038 1
CDS degS ZP_03221945.1 SeJ_A3825 periplasmic serine peptidase DegS 54072 55142 -1
CDS - ZP_03221994.1 SeJ_A3824 protease DegQ 55235 56602 -1
CDS rplM ZP_03221965.1 SeJ_A3821 ribosomal protein L13 58776 59204 1
CDS rpsI ZP_03221973.1 SeJ_A3820 ribosomal protein S9 59220 59612 1
CDS sspA ZP_03221969.1 SeJ_A3818 stringent starvation protein A 60827 61465 1
CDS sspB ZP_03221951.1 SeJ_A3817 stringent starvation protein B 61471 61971 1
CDS - ZP_03221964.1 SeJ_A3816 transcriptional regulator NanR 62089 62871 1
CDS nanA ZP_03221932.1 SeJ_A3815 N-acetylneuraminate lyase 63006 63899 1
CDS - ZP_03221941.1 SeJ_A3814 putative sialic acid transporter 64015 65505 1
CDS - ZP_03221987.1 SeJ_A3813 bifunctional enzyme NanE/nanK 65552 66241 1
CDS - ZP_03221954.1 SeJ_A3812 putative N-acetylmannosamine kinase 66238 67113 1
CDS - ZP_03221953.1 SeJ_A3811 putative cytoplasmic protein 67110 67577 1
CDS - ZP_03222003.1 SeJ_A3810 cytosine deaminase 67659 68939 -1
CDS - ZP_03221977.1 SeJ_A3809 cytosine permease 68926 70275 -1
CDS - ZP_03221993.1 SeJ_A3808 conserved hypothetical protein 70295 71398 -1
CDS gltD ZP_03222014.1 SeJ_A3807 glutamate synthase (NADPH), small subunit 71606 73024 -1
CDS - ZP_03221963.1 SeJ_A3805 radical SAM protein, TIGR01212 family 78166 79095 1
CDS - ZP_03221968.1 SeJ_A3804 PAS fold family protein 79189 81525 1
CDS elbB ZP_03221939.1 SeJ_A3802 enhancing lycopene biosynthesis protein 2 81752 82405 1
CDS mtgA ZP_03221929.1 SeJ_A3801 monofunctional biosynthetic peptidoglycan transglycosylase 82402 83130 1
CDS - ZP_03221938.1 SeJ_A3800 conserved hypothetical protein 83205 83837 -1
CDS ptsO ZP_03222013.1 SeJ_A3799 phosphocarrier protein NPr 84084 84356 -1
CDS - ZP_03221959.1 SeJ_A3798 conserved hypothetical protein 84353 85207 -1
CDS ptsN ZP_03221952.1 SeJ_A3797 PTS IIA-like nitrogen-regulatory protein PtsN 85253 85744 -1
CDS yfiA ZP_03221976.1 SeJ_A3796 ribosomal subunit interface protein 85862 86149 -1
CDS rpoN ZP_03221975.1 SeJ_A3795 RNA polymerase sigma-54 factor 86172 87605 -1
CDS lptB ZP_03221998.1 SeJ_A3794 lipopolysaccharide ABC transporter, ATP-binding protein 87653 88378 -1
CDS lptA ZP_03221948.1 SeJ_A3793 lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-binding protein 88385 88939 -1
CDS - ZP_03222011.1 SeJ_A3792 conserved hypothetical protein 88908 89483 -1
CDS kdsC ZP_03221984.1 SeJ_A3791 3-deoxy-manno-octulosonate-8-phosphatase 89480 90046 -1
CDS kdsD ZP_03222006.1 SeJ_A3790 arabinose 5-phosphate isomerase 90067 91053 -1
CDS - ZP_03222008.1 SeJ_A3789 sodium/calcium exchanger protein 91067 92044 -1
CDS - ZP_03221986.1 SeJ_A3788 toluene ABC transporter, ATP-binding protein 92257 93069 1
CDS - ZP_03221983.1 SeJ_A3787 toluene ABC transporter, permease protein 93077 93859 1
CDS - ZP_03221934.1 SeJ_A3786 Mce family protein 93864 94415 1
CDS ttg2D ZP_03221930.1 SeJ_A3785 toluene tolerance protein Ttg2D 94434 95069 1
CDS - ZP_03221997.1 SeJ_A3784 putative stas domain protein 95069 95365 1
CDS - ZP_03221999.1 SeJ_A3783 protein YrbA 95553 95807 1
CDS murA ZP_03222015.1 SeJ_A3782 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 95861 97120 1
CDS - ZP_03221982.1 SeJ_A3781 transcriptional regulator 97178 97465 -1
CDS ispB ZP_03222002.1 SeJ_A3780 octaprenyl-diphosphate synthase 97697 98809 -1
CDS rpmA ZP_03221992.1 SeJ_A3778 ribosomal protein L27 99257 99514 1
CDS - ZP_03221985.1 SeJ_A3777 putative transporter 99644 100609 1
CDS - ZP_03221979.1 SeJ_A3776 GTP-binding protein Obg/CgtA 100625 101797 1
CDS - ZP_03221958.1 SeJ_A3775 hypothetical protein 101794 101919 -1
CDS dacB ZP_03221966.1 SeJ_A3774 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 101928 103361 -1
CDS - ZP_03221960.1 SeJ_A3773 hypothetical protein 103427 103555 1
CDS greA ZP_03221972.1 SeJ_A3772 transcription elongation factor GreA 103609 104085 1
CDS - ZP_03222018.1 SeJ_A3771 putative RNA-binding protein 104241 104573 -1