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Salmonella enterica subsp. enterica serovar Newport str. SL317, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_02700480.1 SNSL317_A0958 phage terminase large subunit 669 2600 1
CDS - ZP_02700481.1 SNSL317_A0959 gpW 2584 2787 1
CDS - ZP_02700482.2 SNSL317_A0960 phage portal protein, lambda family 2745 4364 1
CDS - ZP_02700483.1 SNSL317_A0961 gifsy-1 prophage head-tail preconnector gp5 4354 5850 1
CDS - ZP_02700484.1 SNSL317_A0962 bacteriophage lambda head decoration protein D 5863 6210 1
CDS - ZP_02700485.1 SNSL317_A0963 phage major capsid protein E 6265 7293 1
CDS - ZP_02700486.1 SNSL317_A0964 gifsy-1 prophage DNA packaging protein gp9 7351 7710 1
CDS - ZP_02700487.1 SNSL317_A0965 phage Head-Tail Attachment 7721 8104 1
CDS - ZP_02700488.1 SNSL317_A0966 prophage minor tail protein Z 8182 8706 1
CDS - ZP_02700489.2 SNSL317_A0968 peyer'S patch-specific virulence factor GipA 8755 10005 -1
CDS - ZP_02700490.1 SNSL317_A0967 phage minor tail protein U 9994 10395 1
CDS - ZP_02700491.1 SNSL317_A0969 gifsy-1 prophage VmtV 10406 11149 1
CDS - ZP_02700492.1 SNSL317_A0970 phage minor tail protein G 11200 11595 1
CDS - ZP_02700494.1 SNSL317_A0972 gifsy-1 prophage VmtH 11901 14996 1
CDS - ZP_02700495.1 SNSL317_A0973 phage minor tail protein 14999 15328 1
CDS - ZP_02700496.1 SNSL317_A0974 phage minor tail protein L 15338 16036 1
CDS - ZP_02700498.2 SNSL317_A0976 bacteriophage lambda tail assembly protein I 16819 17325 1
CDS - ZP_02700499.1 SNSL317_A0977 host specificity protein 17387 20749 1
CDS - ZP_02700500.1 SNSL317_A0978 conserved hypothetical protein 20794 21030 1
CDS - ZP_02700501.1 SNSL317_A0979 side tail fiber protein 21084 23456 1
CDS - ZP_02700503.1 SNSL317_A0980 appr-1-p processing enzyme family protein 23453 24277 1
CDS - ZP_02700504.1 SNSL317_A0981 phage tail assembly protein 24267 24845 1
CDS - ZP_02700506.2 SNSL317_A0983 integrase, catalytic region 26241 26360 1
CDS - ZP_02700507.1 SNSL317_A0985 hypothetical protein 27327 27455 1
CDS - ZP_03080168.1 SNSL317_A0986 leucine-rich repeat protein 27659 29128 -1
CDS lepA ZP_02700510.1 SNSL317_A0987 GTP-binding protein LepA 29557 31356 1
CDS lepB ZP_02700511.1 SNSL317_A0988 signal peptidase I 31373 32347 1
CDS rnc ZP_02700512.1 SNSL317_A0990 ribonuclease III 32564 33301 1
CDS era ZP_02700513.1 SNSL317_A0991 GTP-binding protein Era 33298 34203 1
CDS recO ZP_02700514.1 SNSL317_A0992 DNA repair protein RecO 34215 34943 1
CDS pdxJ ZP_02700515.1 SNSL317_A0993 pyridoxine 5'-phosphate synthase 34955 35686 1
CDS acpS ZP_02700516.1 SNSL317_A0994 holo-(acyl-carrier-protein) synthase 35686 36066 1
CDS - ZP_02700517.1 SNSL317_A0995 ferredoxin 36178 36438 -1
CDS - ZP_02700518.2 SNSL317_A0996 putative transcriptional regulator 36476 37402 -1
CDS - ZP_02700519.1 SNSL317_A0997 major facilitator family transporter 37518 38714 1
CDS panE ZP_02700520.1 SNSL317_A0998 2-dehydropantoate 2-reductase 38736 39653 1
CDS - ZP_02700521.1 SNSL317_A0999 transcriptional regulator, RpiR family protein 39692 40540 -1
CDS murQ ZP_02700522.1 SNSL317_A1000 N-acetylmuramic acid 6-phosphate etherase 40656 41549 1
CDS - ZP_02700523.1 SNSL317_A1001 phosphotransferase system, eiic 41560 42921 1
CDS yfhB ZP_02700524.1 SNSL317_A1002 HAD superfamily (subfamily IF) hydrolase, YfhB 42925 43560 1
CDS - ZP_02700525.2 SNSL317_A1003 tRNA-specific adenosine deaminase 43618 44136 1
CDS - ZP_02700526.1 SNSL317_A1004 lytic transglycosylase, catalytic 44187 45731 -1
CDS - ZP_02700527.2 SNSL317_A1005 conserved hypothetical protein 45736 45873 -1
CDS purL ZP_02700528.1 SNSL317_A1006 phosphoribosylformylglycinamidine synthase 45987 49874 1
CDS - ZP_02700530.1 SNSL317_A1009 conserved hypothetical protein 51889 52575 1
CDS - ZP_02700531.1 SNSL317_A1010 transcriptional regulatory protein ZraR 52572 53909 1
CDS - ZP_02700532.2 SNSL317_A1011 nitrogen regulatory protein P-II 53986 54324 1
CDS - ZP_02700533.1 SNSL317_A1012 inner membrane transporter YbgH 54373 55833 -1
CDS - ZP_02700534.1 SNSL317_A1013 lysine decarboxylase, constitutive 55889 58033 -1
CDS - ZP_02700535.1 SNSL317_A1014 lysine/cadaverine transport protein 58116 59447 -1
CDS - ZP_02700536.1 SNSL317_A1015 transcriptional activator CadC 59808 61349 -1
CDS hmp ZP_02700538.1 SNSL317_A1016 flavohemoprotein 61531 62721 -1
CDS - ZP_02700539.1 SNSL317_A1017 conserved hypothetical protein 62762 62908 1
CDS glyA ZP_02700540.1 SNSL317_A1018 serine hydroxymethyltransferase 63046 64299 1
CDS - ZP_02700542.1 SNSL317_A1019 probable 3-phenylpropionic acid transporter 64495 65634 1
CDS - ZP_02700543.1 SNSL317_A1020 stationary phase-inducible protein CsiE 65629 66906 -1
CDS - ZP_02700544.2 SNSL317_A1021 conserved hypothetical protein 67002 67670 1
CDS - ZP_02700545.1 SNSL317_A1022 high-affinity nickel-transporter 67661 68647 1
CDS asrC ZP_02700546.1 SNSL317_A1023 sulfite reductase, subunit C 68648 69661 -1
CDS asrB ZP_02700547.1 SNSL317_A1024 sulfite reductase, subunit B 69672 70490 -1
CDS asrA ZP_02700548.1 SNSL317_A1025 sulfite reductase, subunit A 70494 71537 -1
CDS - ZP_02700549.1 SNSL317_A1026 conserved hypothetical protein 71719 72597 -1
CDS suhB ZP_02700550.1 SNSL317_A1027 inositol-1-monophosphatase 72742 73545 -1
CDS - ZP_02700552.1 SNSL317_A1028 RNA methyltransferase 73664 74395 1
CDS iscR ZP_02700553.1 SNSL317_A1029 iron-sulfur cluster assembly transcription factor IscR 74555 75049 1
CDS - ZP_02700554.1 SNSL317_A1030 hypothetical protein 75058 75177 -1
CDS iscS ZP_02700555.1 SNSL317_A1031 cysteine desulfurase IscS 75230 76444 1
CDS iscU ZP_02700556.1 SNSL317_A1032 FeS cluster assembly scaffold IscU 76472 76858 1
CDS iscA ZP_02700557.1 SNSL317_A1033 iron-sulfur cluster assembly protein IscA 76887 77210 1
CDS hscB ZP_02700558.1 SNSL317_A1034 Fe-S protein assembly co-chaperone HscB 77406 77921 1
CDS hscA ZP_02700559.1 SNSL317_A1035 Fe-S protein assembly chaperone HscA 77934 79784 1
CDS fdx ZP_02700560.1 SNSL317_A1036 ferredoxin, 2Fe-2S type, ISC system 79786 80121 1
CDS iscX ZP_02700561.1 SNSL317_A1037 FeS assembly protein IscX 80133 80333 1
CDS - ZP_02700563.1 SNSL317_A1038 peptidase B 80511 81794 1
CDS sseB ZP_02700564.1 SNSL317_A1039 SseB protein 81901 82677 1
CDS - ZP_02700565.1 SNSL317_A1041 hypothetical protein 83063 83191 1
CDS - ZP_02700567.1 SNSL317_A1042 conserved hypothetical protein 83246 83914 -1
CDS - ZP_02700568.2 SNSL317_A1043 hypothetical protein 83956 84180 1
CDS - ZP_02700569.1 SNSL317_A1044 conserved hypothetical protein 84160 85002 -1
CDS - ZP_02700570.1 SNSL317_A1045 YfhM 85211 90145 1
CDS pbpC ZP_02700571.1 SNSL317_A1046 penicillin-binding protein 1C 90146 92461 1
CDS - ZP_02700572.1 SNSL317_A1047 anaerobic dimethyl sulfoxide reductase chain a 92617 94995 1
CDS dmsB ZP_02700573.1 SNSL317_A1048 dimethylsulfoxide reductase, chain B 94992 95621 1
CDS - ZP_02700574.1 SNSL317_A1049 putative anaerobic reductase component 95614 96423 1
CDS - ZP_02700575.1 SNSL317_A1050 putative polyferredoxin 96423 97286 1
CDS ndk ZP_02700577.1 SNSL317_A1051 nucleoside diphosphate kinase 97407 97838 1
CDS - ZP_02700578.1 SNSL317_A1052 radical SAM enzyme, Cfr family 98045 99211 1
CDS - ZP_02700579.2 SNSL317_A1053 type IV pilus biogenesis/stability protein PilW 99244 99366 1
CDS - ZP_02700580.1 SNSL317_A1054 helix-turn-helix domain protein 99503 100501 1
CDS ispG ZP_02700581.1 SNSL317_A1055 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 100528 101646 1
CDS hisS ZP_02700582.1 SNSL317_A1057 histidyl-tRNA synthetase 101757 103031 1
CDS - ZP_02700583.1 SNSL317_A1058 conserved hypothetical protein 103045 103665 1
CDS - ZP_02700584.1 SNSL317_A1059 outer membrane assembly lipoprotein YfgL 103676 104854 1
CDS - ZP_03080169.1 SNSL317_A1061 hypothetical protein 104873 105022 -1
CDS engA ZP_02700585.1 SNSL317_A1060 ribosome-associated GTPase EngA 104973 106445 1
CDS - ZP_02700587.1 SNSL317_A1062 conserved domain protein 106534 106755 1
CDS - ZP_02700590.1 SNSL317_A1063 Aec1 107101 109293 1
CDS - ZP_03080167.1 SNSL317_A1065 hypothetical protein 109274 109396 -1
CDS - ZP_02700591.1 SNSL317_A1064 conserved hypothetical protein 109351 110313 1
CDS - ZP_02700592.1 SNSL317_A1066 RatB 110451 116030 1