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Shigella sp. D9, whole genome shotgun sequence. features

Type Gene Protein id Locus Product Start pos End pos Strand
CDS - ZP_05431418.1 ShiD9_010100001470 hypothetical protein 1 149 1
CDS - ZP_05431419.1 ShiD9_010100001475 aminotransferase AlaT 158 1375 -1
CDS - ZP_05431420.1 ShiD9_010100001480 DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes 2295 3233 1
CDS - ZP_05431421.1 ShiD9_010100001485 NADH dehydrogenase subunit A 3864 4307 1
CDS - ZP_05431422.1 ShiD9_010100001490 NADH dehydrogenase subunit B 4323 4985 1
CDS - ZP_05431423.1 ShiD9_010100001495 bifunctional NADH:ubiquinone oxidoreductase subunit C/D 5091 6881 1
CDS - ZP_05431424.1 ShiD9_010100001500 NADH dehydrogenase subunit E 6884 7384 1
CDS - ZP_05431425.1 ShiD9_010100001505 NADH dehydrogenase I subunit F 7381 8718 1
CDS - ZP_05431426.1 ShiD9_010100001510 NADH dehydrogenase subunit G 8771 11497 1
CDS - ZP_05431427.1 ShiD9_010100001515 NADH dehydrogenase subunit H 11494 12471 1
CDS - ZP_05431428.1 ShiD9_010100001520 NADH dehydrogenase subunit I 12486 13028 1
CDS - ZP_05431429.1 ShiD9_010100001525 NADH dehydrogenase subunit J 13040 13594 1
CDS - ZP_05431430.1 ShiD9_010100001530 NADH dehydrogenase subunit K 13591 13893 1
CDS - ZP_05431431.1 ShiD9_010100001535 NADH dehydrogenase subunit L 13890 15731 1
CDS - ZP_05431432.1 ShiD9_010100001540 NADH dehydrogenase subunit M 15895 17424 1
CDS - ZP_05431433.1 ShiD9_010100001545 NADH dehydrogenase subunit N 17431 18888 1
CDS - ZP_05431434.1 ShiD9_010100001550 hypothetical protein 18955 19458 -1
CDS - ZP_05431435.1 ShiD9_010100001555 hypothetical protein 19584 19763 -1
CDS - ZP_05431436.1 ShiD9_010100001560 deubiquitinase 20579 21796 -1
CDS - ZP_05431437.1 ShiD9_010100001565 ribonuclease Z 21987 22922 -1
CDS - ZP_05431438.1 ShiD9_010100001570 hypothetical protein 22969 23430 1
CDS - ZP_05431439.1 ShiD9_010100001575 hypothetical protein 23485 23790 1
CDS - ZP_05431440.1 ShiD9_010100001580 isochorismate synthase 2 23869 25164 1
CDS - ZP_05431441.1 ShiD9_010100001585 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 25253 26923 1
CDS - ZP_05431442.1 ShiD9_010100001590 acyl-CoA thioester hydrolase YfbB 26920 27678 1
CDS - ZP_05431443.1 ShiD9_010100001595 naphthoate synthase 27693 28550 1
CDS - ZP_05431444.1 ShiD9_010100001600 O-succinylbenzoate synthase 28550 29512 1
CDS - ZP_05431445.1 ShiD9_010100001605 O-succinylbenzoic acid--CoA ligase 29509 30864 1
CDS - ZP_05431446.1 ShiD9_010100001610 polymyxin resistance protein B 30974 31240 1
CDS - ZP_05431447.1 ShiD9_010100001615 hypothetical protein 31234 31620 -1
CDS - ZP_05431448.1 ShiD9_010100001620 sucrose-6 phosphate hydrolase 31620 31955 -1
CDS arnT ZP_05431449.1 ShiD9_010100001625 4-amino-4-deoxy-L-arabinose transferase 31952 33604 -1
CDS - ZP_05431450.1 ShiD9_010100001630 hypothetical protein 33604 34494 -1
CDS - ZP_05431451.1 ShiD9_010100001635 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 34491 36473 -1
CDS - ZP_05431452.1 ShiD9_010100001640 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 36473 37441 -1
CDS - ZP_05431453.1 ShiD9_010100001645 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 37445 38602 -1
CDS - ZP_05431454.1 ShiD9_010100001650 hypothetical protein 38892 39494 1
CDS - ZP_05431455.1 ShiD9_010100001655 putative NUDIX hydrolase 39533 39958 -1
CDS - ZP_05431456.1 ShiD9_010100001660 putative outer membrane porin protein 40237 40779 1
CDS - ZP_05431457.1 ShiD9_010100001665 competence damage-inducible protein A 40879 42081 1
CDS - ZP_05431458.1 ShiD9_010100001670 putative aldolase 42217 42606 1
CDS - ZP_05431459.1 ShiD9_010100001675 hypothetical protein 42647 43549 -1
CDS glpC ZP_05431460.1 ShiD9_010100001680 sn-glycerol-3-phosphate dehydrogenase subunit C 43743 44933 -1
CDS - ZP_05431461.1 ShiD9_010100001685 anaerobic glycerol-3-phosphate dehydrogenase subunit B 44930 46189 -1
CDS glpA ZP_05431462.1 ShiD9_010100001690 sn-glycerol-3-phosphate dehydrogenase subunit A 46179 47807 -1
CDS glpT ZP_05431463.1 ShiD9_010100001695 sn-glycerol-3-phosphate transporter 48080 49438 1
CDS glpQ ZP_05431464.1 ShiD9_010100001700 glycerophosphodiester phosphodiesterase 49443 50519 1
CDS - ZP_05431465.1 ShiD9_010100001705 hypothetical protein 50561 50767 -1
CDS - ZP_05431466.1 ShiD9_010100001710 hypothetical protein 50982 51632 1
CDS - ZP_05431467.1 ShiD9_010100001715 2Fe-2S ferredoxin YfaE 51686 51940 -1
CDS nrdB ZP_05431468.1 ShiD9_010100001720 ribonucleotide-diphosphate reductase subunit beta 51940 53070 -1
CDS - ZP_05431469.1 ShiD9_010100001725 ribonucleotide-diphosphate reductase subunit alpha 53217 55502 -1
CDS - ZP_05431470.1 ShiD9_010100001730 adhesin 56198 59932 1
CDS - ZP_05431471.1 ShiD9_010100001735 3-demethylubiquinone-9 3-methyltransferase 60060 60782 -1
CDS - ZP_05431472.1 ShiD9_010100001740 DNA gyrase subunit A 60929 63556 1
CDS - ZP_05431473.1 ShiD9_010100001745 hypothetical protein 63705 65225 1
CDS - ZP_05431474.1 ShiD9_010100001750 hypothetical protein 65222 65392 1
CDS - ZP_05431475.1 ShiD9_010100001755 hypothetical protein 65389 66012 1
CDS - ZP_05431476.1 ShiD9_010100001760 hypothetical protein 66036 70550 1
CDS - ZP_05431477.1 ShiD9_010100001765 hypothetical protein 70551 72200 1
CDS - ZP_05431478.1 ShiD9_010100001770 hypothetical protein 72205 72981 1
CDS - ZP_05431479.1 ShiD9_010100001775 hybrid sensory kinase in two-component regulatory system with RcsB and YojN 73256 76105 1
CDS - ZP_05431480.1 ShiD9_010100001780 transcriptional regulator RcsB 76305 76955 -1
CDS - ZP_05431481.1 ShiD9_010100001785 phosphotransfer intermediate protein in two-component regulatory system with RcsBC 76972 79644 -1
CDS - ZP_05431482.1 ShiD9_010100001790 outer membrane porin protein C 80383 81486 1
CDS - ZP_05431483.1 ShiD9_010100001795 thiamine biosynthesis lipoprotein ApbE 81598 82653 1
CDS - ZP_05431484.1 ShiD9_010100001800 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase 82727 83791 1
CDS - ZP_05431485.1 ShiD9_010100001805 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions 83791 84441 1
CDS - ZP_05431486.1 ShiD9_010100001810 multidrug transporter membrane component/ATP-binding component 84517 86160 1
CDS - ZP_05431487.1 ShiD9_010100001815 malate:quinone oxidoreductase 86378 88024 1
CDS - ZP_05431488.1 ShiD9_010100001820 ecotin 88173 88661 -1
CDS - ZP_05431489.1 ShiD9_010100001825 ferredoxin-type protein 89069 89563 1
CDS - ZP_05431490.1 ShiD9_010100001830 assembly protein for periplasmic nitrate reductase 89553 89816 1
CDS - ZP_05431491.1 ShiD9_010100001835 nitrate reductase catalytic subunit 89813 92299 1
CDS napG ZP_05431492.1 ShiD9_010100001840 quinol dehydrogenase periplasmic component 92306 93001 1
CDS napH ZP_05431493.1 ShiD9_010100001845 quinol dehydrogenase membrane component 92988 93851 1
CDS napB ZP_05431494.1 ShiD9_010100001850 citrate reductase cytochrome c-type subunit 93848 94297 1
CDS - ZP_05431495.1 ShiD9_010100001855 cytochrome c-type protein NapC 94307 94909 1
CDS - ZP_05431496.1 ShiD9_010100001860 cytochrome c biogenesis protein CcmA 94922 95545 1
CDS - ZP_05431497.1 ShiD9_010100001865 heme exporter subunit, membrane component of ABC superfamily protein 95542 96204 1
CDS - ZP_05431498.1 ShiD9_010100001870 heme exporter protein C 96246 96983 1
CDS - ZP_05431499.1 ShiD9_010100001875 cytochrome c biogenesis protein 96980 97189 1
CDS - ZP_05431500.1 ShiD9_010100001880 cytochrome c-type biogenesis protein CcmE 97186 97665 1
CDS - ZP_05431501.1 ShiD9_010100001885 heme lyase, CcmF subunit 97662 99605 1
CDS - ZP_05431502.1 ShiD9_010100001890 periplasmic thioredoxin of cytochrome c-type biogenesis 99602 100159 1
CDS - ZP_05431503.1 ShiD9_010100001895 heme lyase, CcmH subunit 100156 101208 1
CDS - ZP_05431504.1 ShiD9_010100001900 transcriptional regulator NarP 101243 101890 -1
CDS - ZP_05431505.1 ShiD9_010100001905 putative autotransporter 102291 104576 1
CDS - ZP_05431506.1 ShiD9_010100001910 predicted autotransporter outer membrane protein 104589 104801 1
CDS - ZP_05431507.1 ShiD9_010100001915 hypothetical protein 104765 104926 1
tRNA - - ShiD9_010100t02172 tRNA-Pro 104905 104981 -1
CDS - ZP_05431508.1 ShiD9_010100001920 putative hydrolase, inner membrane-associated protein 105056 106816 -1
CDS - ZP_05431509.1 ShiD9_010100001925 hypothetical protein 106836 107063 -1
CDS - ZP_05431510.1 ShiD9_010100001930 nucleoid-associated protein NdpA 107245 108252 1
CDS - ZP_05431511.1 ShiD9_010100001935 50S ribosomal protein L25 108391 108675 -1
CDS - ZP_05431512.1 ShiD9_010100001940 putative nucleic acid ATP-dependent helicase 108800 110560 -1
CDS - ZP_05431513.1 ShiD9_010100001945 16S rRNA pseudouridylate synthase A 110709 111404 1
CDS - ZP_05431514.1 ShiD9_010100001950 bicyclomycin/multidrug efflux system 111432 112622 1
CDS - ZP_05431515.1 ShiD9_010100001955 hypothetical protein 112955 113299 1
CDS - ZP_05431516.1 ShiD9_010100001960 putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components 113303 114892 -1